| 312 |  | # include <unistd.h> | 
| 313 |  | #endif" | 
| 314 |  |  | 
| 315 | < | ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PROGNAME debug build build_cpu build_vendor build_os host host_cpu host_vendor host_os CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT CXX CXXFLAGS ac_ct_CXX OOPSE_TEMPLATE_FLAGS EXTRA_CC_FLAG F90 F90FLAGS ac_ct_F90 PREPFLAG PREPDEFFLAG F90LIBS F90_FUNC F90_FUNC_ MOD F90_WORK_FILES_ARG MODDIRFLAG F90MODINCSPEC F90_MODULE_NAMES CPP EGREP LIBOBJS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S SET_MAKE RANLIB ac_ct_RANLIB YACC LEX LEXLIB LEX_OUTPUT_ROOT AR MPI_LIB_DIR MPI_INC_DIR MPI_F90_INC MPI_LIB MPI_F90_LIB USE_MPI SPRNG_LIB_DIR SPRNG_INC_DIR SPRNG_LIB USE_SPRNG MKL_LIBDIR MKL_LIB MKL_INC HAVE_MKL BATEXT MKINSTALLDIRS OOPSE OOPSE_HOME SUBDIRS FFLAGS LTLIBOBJS' | 
| 315 | > | ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PROGNAME debug build build_cpu build_vendor build_os host host_cpu host_vendor host_os CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT CXX CXXFLAGS ac_ct_CXX OOPSE_TEMPLATE_FLAGS EXTRA_CC_FLAG F90 F90FLAGS ac_ct_F90 PREPFLAG PREPDEFFLAG F90LIBS F90_FUNC F90_FUNC_ MOD F90_WORK_FILES_ARG MODDIRFLAG F90MODINCSPEC F90_MODULE_NAMES CPP EGREP LIBOBJS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S SET_MAKE RANLIB ac_ct_RANLIB YACC LEX LEXLIB LEX_OUTPUT_ROOT AR MPI_LIB_DIR MPI_INC_DIR MPI_F90_INC MPI_LIB MPI_F90_LIB USE_MPI SPRNG_LIB_DIR SPRNG_INC_DIR SPRNG_LIB USE_SPRNG MKL_LIBDIR MKL_LIB MKL_INC HAVE_MKL DOXYGEN DOT DOC enable_dot enable_html_docs enable_latex_docs BATEXT MKINSTALLDIRS OOPSE OOPSE_HOME SUBDIRS FFLAGS LTLIBOBJS' | 
| 316 |  | ac_subst_files='' | 
| 317 |  |  | 
| 318 |  | # Initialize some variables set by options. | 
| 866 |  | --disable-FEATURE       do not include FEATURE (same as --enable-FEATURE=no) | 
| 867 |  | --enable-FEATURE[=ARG]  include FEATURE [ARG=yes] | 
| 868 |  | --enable-debug          Compile OOPSE in debug mode | 
| 869 | + | --enable-doxygen        enable documentation generation with doxygen (auto) | 
| 870 | + | --enable-dot            use 'dot' to generate graphs in doxygen (auto) | 
| 871 | + | --enable-html-docs      enable HTML generation with doxygen (yes) | 
| 872 | + | --enable-latex-docs     enable LaTeX documentation generation with doxygen (no) | 
| 873 |  | --enable-oopse-home=DIR      define oopse home dir PREFIX/oopse | 
| 874 |  |  | 
| 875 |  | Optional Packages: | 
| 1824 |  | # Figure out how the Fortran 90 compiler constructs module file names | 
| 1825 |  | # | 
| 1826 |  | # AC_F90_MODULE_NAMES | 
| 1827 | + |  | 
| 1828 | + |  | 
| 1829 | + |  | 
| 1830 |  |  | 
| 1831 |  |  | 
| 1832 |  |  | 
| 3542 |  | ac_save_F90FLAGS=$F90FLAGS | 
| 3543 |  | F90FLAGS="$F90FLAGS $ac_verb" | 
| 3544 |  |  | 
| 3545 | < | (eval echo $as_me:3538: \"$ac_link\") >&5 | 
| 3545 | > | (eval echo $as_me:3545: \"$ac_link\") >&5 | 
| 3546 |  | ac_f90_v_output=`eval $ac_link 5>&1 2>&1 | grep -v 'Driving:'` | 
| 3547 |  | echo "$ac_f90_v_output" >&5 | 
| 3548 |  | F90FLAGS=$ac_save_F90FLAGS | 
| 3619 |  | ac_save_F90FLAGS=$F90FLAGS | 
| 3620 |  | F90FLAGS="$F90FLAGS $ac_cv_prog_f90_v" | 
| 3621 |  |  | 
| 3622 | < | (eval echo $as_me:3615: \"$ac_link\") >&5 | 
| 3622 | > | (eval echo $as_me:3622: \"$ac_link\") >&5 | 
| 3623 |  | ac_f90_v_output=`eval $ac_link 5>&1 2>&1 | grep -v 'Driving:'` | 
| 3624 |  | echo "$ac_f90_v_output" >&5 | 
| 3625 |  | F90FLAGS=$ac_save_F90FLAGS | 
| 4946 |  |  | 
| 4947 |  |  | 
| 4948 |  | # clean out junk possibly left behind by a previous configuration | 
| 4949 | < | rm -f utils/getopt.h | 
| 4949 | > | rm -f src/utils/getopt.h | 
| 4950 |  | # Check for getopt_long support | 
| 4951 |  |  | 
| 4952 |  | for ac_header in getopt.h | 
| 5286 |  | *) LIBOBJS="$LIBOBJS getopt1.$ac_objext" ;; | 
| 5287 |  | esac | 
| 5288 |  |  | 
| 5289 | < | ac_config_links="$ac_config_links utils/getopt.h:utils/gnugetopt.h" | 
| 5289 | > | ac_config_links="$ac_config_links src/utils/getopt.h:src/utils/gnugetopt.h" | 
| 5290 |  |  | 
| 5291 |  | fi | 
| 5292 |  |  | 
| 7751 |  |  | 
| 7752 |  | echo "$as_me:$LINENO: result: no" >&5 | 
| 7753 |  | echo "${ECHO_T}no" >&6 | 
| 7754 | + |  | 
| 7755 | + | fi; | 
| 7756 | + |  | 
| 7757 | + |  | 
| 7758 | + |  | 
| 7759 | + | # Check whether --enable-doxygen or --disable-doxygen was given. | 
| 7760 | + | if test "${enable_doxygen+set}" = set; then | 
| 7761 | + | enableval="$enable_doxygen" | 
| 7762 | + |  | 
| 7763 | + | fi; | 
| 7764 | + | # Check whether --enable-dot or --disable-dot was given. | 
| 7765 | + | if test "${enable_dot+set}" = set; then | 
| 7766 | + | enableval="$enable_dot" | 
| 7767 | + |  | 
| 7768 | + | fi; | 
| 7769 | + | # Check whether --enable-html-docs or --disable-html-docs was given. | 
| 7770 | + | if test "${enable_html_docs+set}" = set; then | 
| 7771 | + | enableval="$enable_html_docs" | 
| 7772 | + |  | 
| 7773 | + | else | 
| 7774 | + | enable_html_docs=yes | 
| 7775 | + | fi; | 
| 7776 | + | # Check whether --enable-latex-docs or --disable-latex-docs was given. | 
| 7777 | + | if test "${enable_latex_docs+set}" = set; then | 
| 7778 | + | enableval="$enable_latex_docs" | 
| 7779 |  |  | 
| 7780 | + | else | 
| 7781 | + | enable_latex_docs=no | 
| 7782 |  | fi; | 
| 7783 | + | if test "x$enable_doxygen" = xno; then | 
| 7784 | + | enable_doc=no | 
| 7785 | + | else | 
| 7786 | + | # Extract the first word of "doxygen", so it can be a program name with args. | 
| 7787 | + | set dummy doxygen; ac_word=$2 | 
| 7788 | + | echo "$as_me:$LINENO: checking for $ac_word" >&5 | 
| 7789 | + | echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 | 
| 7790 | + | if test "${ac_cv_path_DOXYGEN+set}" = set; then | 
| 7791 | + | echo $ECHO_N "(cached) $ECHO_C" >&6 | 
| 7792 | + | else | 
| 7793 | + | case $DOXYGEN in | 
| 7794 | + | [\\/]* | ?:[\\/]*) | 
| 7795 | + | ac_cv_path_DOXYGEN="$DOXYGEN" # Let the user override the test with a path. | 
| 7796 | + | ;; | 
| 7797 | + | *) | 
| 7798 | + | as_save_IFS=$IFS; IFS=$PATH_SEPARATOR | 
| 7799 | + | for as_dir in $PATH | 
| 7800 | + | do | 
| 7801 | + | IFS=$as_save_IFS | 
| 7802 | + | test -z "$as_dir" && as_dir=. | 
| 7803 | + | for ac_exec_ext in '' $ac_executable_extensions; do | 
| 7804 | + | if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then | 
| 7805 | + | ac_cv_path_DOXYGEN="$as_dir/$ac_word$ac_exec_ext" | 
| 7806 | + | echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 | 
| 7807 | + | break 2 | 
| 7808 | + | fi | 
| 7809 | + | done | 
| 7810 | + | done | 
| 7811 | + |  | 
| 7812 | + | ;; | 
| 7813 | + | esac | 
| 7814 | + | fi | 
| 7815 | + | DOXYGEN=$ac_cv_path_DOXYGEN | 
| 7816 | + |  | 
| 7817 | + | if test -n "$DOXYGEN"; then | 
| 7818 | + | echo "$as_me:$LINENO: result: $DOXYGEN" >&5 | 
| 7819 | + | echo "${ECHO_T}$DOXYGEN" >&6 | 
| 7820 | + | else | 
| 7821 | + | echo "$as_me:$LINENO: result: no" >&5 | 
| 7822 | + | echo "${ECHO_T}no" >&6 | 
| 7823 | + | fi | 
| 7824 |  |  | 
| 7825 | + | if test "x$DOXYGEN" = x; then | 
| 7826 | + | if test "x$enable_doxygen" = xyes; then | 
| 7827 | + | { { echo "$as_me:$LINENO: error: could not find doxygen" >&5 | 
| 7828 | + | echo "$as_me: error: could not find doxygen" >&2;} | 
| 7829 | + | { (exit 1); exit 1; }; } | 
| 7830 | + | fi | 
| 7831 | + | enable_doc=no | 
| 7832 | + | else | 
| 7833 | + | enable_doc=yes | 
| 7834 | + | # Extract the first word of "dot", so it can be a program name with args. | 
| 7835 | + | set dummy dot; ac_word=$2 | 
| 7836 | + | echo "$as_me:$LINENO: checking for $ac_word" >&5 | 
| 7837 | + | echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 | 
| 7838 | + | if test "${ac_cv_path_DOT+set}" = set; then | 
| 7839 | + | echo $ECHO_N "(cached) $ECHO_C" >&6 | 
| 7840 | + | else | 
| 7841 | + | case $DOT in | 
| 7842 | + | [\\/]* | ?:[\\/]*) | 
| 7843 | + | ac_cv_path_DOT="$DOT" # Let the user override the test with a path. | 
| 7844 | + | ;; | 
| 7845 | + | *) | 
| 7846 | + | as_save_IFS=$IFS; IFS=$PATH_SEPARATOR | 
| 7847 | + | for as_dir in $PATH | 
| 7848 | + | do | 
| 7849 | + | IFS=$as_save_IFS | 
| 7850 | + | test -z "$as_dir" && as_dir=. | 
| 7851 | + | for ac_exec_ext in '' $ac_executable_extensions; do | 
| 7852 | + | if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then | 
| 7853 | + | ac_cv_path_DOT="$as_dir/$ac_word$ac_exec_ext" | 
| 7854 | + | echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 | 
| 7855 | + | break 2 | 
| 7856 | + | fi | 
| 7857 | + | done | 
| 7858 | + | done | 
| 7859 |  |  | 
| 7860 | + | ;; | 
| 7861 | + | esac | 
| 7862 | + | fi | 
| 7863 | + | DOT=$ac_cv_path_DOT | 
| 7864 |  |  | 
| 7865 | + | if test -n "$DOT"; then | 
| 7866 | + | echo "$as_me:$LINENO: result: $DOT" >&5 | 
| 7867 | + | echo "${ECHO_T}$DOT" >&6 | 
| 7868 | + | else | 
| 7869 | + | echo "$as_me:$LINENO: result: no" >&5 | 
| 7870 | + | echo "${ECHO_T}no" >&6 | 
| 7871 | + | fi | 
| 7872 | + |  | 
| 7873 | + | fi | 
| 7874 | + | fi | 
| 7875 | + |  | 
| 7876 | + | if test "x$enable_doc" = xyes; then | 
| 7877 | + | DOC=1 | 
| 7878 | + | else | 
| 7879 | + | DOC=0 | 
| 7880 | + | fi | 
| 7881 | + |  | 
| 7882 | + |  | 
| 7883 | + | if test x$DOT = x; then | 
| 7884 | + | if test "x$enable_dot" = xyes; then | 
| 7885 | + | { { echo "$as_me:$LINENO: error: could not find dot" >&5 | 
| 7886 | + | echo "$as_me: error: could not find dot" >&2;} | 
| 7887 | + | { (exit 1); exit 1; }; } | 
| 7888 | + | fi | 
| 7889 | + | enable_dot=no | 
| 7890 | + | else | 
| 7891 | + | enable_dot=yes | 
| 7892 | + | fi | 
| 7893 |  |  | 
| 7894 |  |  | 
| 7895 | + |  | 
| 7896 | + |  | 
| 7897 | + |  | 
| 7898 | + |  | 
| 7899 | + |  | 
| 7900 |  | OBJEXT=".$OBJEXT" | 
| 7901 |  |  | 
| 7902 |  | OOPSE=oopse | 
| 8488 |  | case "$ac_config_target" in | 
| 8489 |  | # Handling of arguments. | 
| 8490 |  | "make/Makefile" ) CONFIG_FILES="$CONFIG_FILES make/Makefile" ;; | 
| 8491 | < | "utils/getopt.h" ) CONFIG_LINKS="$CONFIG_LINKS utils/getopt.h:utils/gnugetopt.h" ;; | 
| 8491 | > | "src/utils/getopt.h" ) CONFIG_LINKS="$CONFIG_LINKS src/utils/getopt.h:src/utils/gnugetopt.h" ;; | 
| 8492 |  | "src/config.h" ) CONFIG_HEADERS="$CONFIG_HEADERS src/config.h" ;; | 
| 8493 |  | *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5 | 
| 8494 |  | echo "$as_me: error: invalid argument: $ac_config_target" >&2;} | 
| 8639 |  | s,@MKL_LIB@,$MKL_LIB,;t t | 
| 8640 |  | s,@MKL_INC@,$MKL_INC,;t t | 
| 8641 |  | s,@HAVE_MKL@,$HAVE_MKL,;t t | 
| 8642 | + | s,@DOXYGEN@,$DOXYGEN,;t t | 
| 8643 | + | s,@DOT@,$DOT,;t t | 
| 8644 | + | s,@DOC@,$DOC,;t t | 
| 8645 | + | s,@enable_dot@,$enable_dot,;t t | 
| 8646 | + | s,@enable_html_docs@,$enable_html_docs,;t t | 
| 8647 | + | s,@enable_latex_docs@,$enable_latex_docs,;t t | 
| 8648 |  | s,@BATEXT@,$BATEXT,;t t | 
| 8649 |  | s,@MKINSTALLDIRS@,$MKINSTALLDIRS,;t t | 
| 8650 |  | s,@OOPSE@,$OOPSE,;t t |