| 312 |  | # include <unistd.h> | 
| 313 |  | #endif" | 
| 314 |  |  | 
| 315 | < | ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PROGNAME debug build build_cpu build_vendor build_os host host_cpu host_vendor host_os CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT CXX CXXFLAGS ac_ct_CXX OOPSE_TEMPLATE_FLAGS EXTRA_CC_FLAG F90 F90FLAGS ac_ct_F90 PREPFLAG PREPDEFFLAG F90LIBS F90_FUNC F90_FUNC_ MOD F90_WORK_FILES_ARG MODDIRFLAG F90MODINCSPEC F90_MODULE_NAMES CPP EGREP LIBOBJS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S SET_MAKE RANLIB ac_ct_RANLIB YACC LEX LEXLIB LEX_OUTPUT_ROOT AR MPI_LIB_DIR MPI_INC_DIR MPI_F90_INC MPI_LIB MPI_F90_LIB USE_MPI SPRNG_LIB_DIR SPRNG_INC_DIR SPRNG_LIB USE_SPRNG MKL_LIBDIR MKL_LIB MKL_INC HAVE_MKL BATEXT MKINSTALLDIRS OOPSE OOPSE_HOME SUBDIRS FFLAGS LTLIBOBJS' | 
| 315 | > | ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PROGNAME debug build build_cpu build_vendor build_os host host_cpu host_vendor host_os CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT CXX CXXFLAGS ac_ct_CXX OOPSE_TEMPLATE_FLAGS EXTRA_CC_FLAG F90 F90FLAGS ac_ct_F90 PREPFLAG PREPDEFFLAG F90LIBS F90_FUNC F90_FUNC_ MOD F90_WORK_FILES_ARG MODDIRFLAG F90MODINCSPEC F90_MODULE_NAMES CPP EGREP LIBOBJS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S SET_MAKE RANLIB ac_ct_RANLIB YACC LEX LEXLIB LEX_OUTPUT_ROOT AR MPI_LIB_DIR MPI_INC_DIR MPI_F90_INC MPI_LIB MPI_F90_LIB USE_MPI SPRNG_LIB_DIR SPRNG_INC_DIR SPRNG_LIB USE_SPRNG MKL_LIBDIR MKL_LIB MKL_INC HAVE_MKL DOXYGEN DOT DOC enable_dot enable_html_docs enable_latex_docs BATEXT MKINSTALLDIRS OOPSE OOPSE_HOME SUBDIRS FFLAGS LTLIBOBJS' | 
| 316 |  | ac_subst_files='' | 
| 317 |  |  | 
| 318 |  | # Initialize some variables set by options. | 
| 866 |  | --disable-FEATURE       do not include FEATURE (same as --enable-FEATURE=no) | 
| 867 |  | --enable-FEATURE[=ARG]  include FEATURE [ARG=yes] | 
| 868 |  | --enable-debug          Compile OOPSE in debug mode | 
| 869 | + | --enable-doxygen        enable documentation generation with doxygen (auto) | 
| 870 | + | --enable-dot            use 'dot' to generate graphs in doxygen (auto) | 
| 871 | + | --enable-html-docs      enable HTML generation with doxygen (yes) | 
| 872 | + | --enable-latex-docs     enable LaTeX documentation generation with doxygen (no) | 
| 873 |  | --enable-oopse-home=DIR      define oopse home dir PREFIX/oopse | 
| 874 |  |  | 
| 875 |  | Optional Packages: | 
| 1880 |  |  | 
| 1881 |  |  | 
| 1882 |  |  | 
| 1883 | + |  | 
| 1884 | + |  | 
| 1885 | + |  | 
| 1886 |  | # set program name | 
| 1887 |  | PROGNAME="oopse" | 
| 1888 |  |  | 
| 3542 |  | ac_save_F90FLAGS=$F90FLAGS | 
| 3543 |  | F90FLAGS="$F90FLAGS $ac_verb" | 
| 3544 |  |  | 
| 3545 | < | (eval echo $as_me:3538: \"$ac_link\") >&5 | 
| 3545 | > | (eval echo $as_me:3545: \"$ac_link\") >&5 | 
| 3546 |  | ac_f90_v_output=`eval $ac_link 5>&1 2>&1 | grep -v 'Driving:'` | 
| 3547 |  | echo "$ac_f90_v_output" >&5 | 
| 3548 |  | F90FLAGS=$ac_save_F90FLAGS | 
| 3619 |  | ac_save_F90FLAGS=$F90FLAGS | 
| 3620 |  | F90FLAGS="$F90FLAGS $ac_cv_prog_f90_v" | 
| 3621 |  |  | 
| 3622 | < | (eval echo $as_me:3615: \"$ac_link\") >&5 | 
| 3622 | > | (eval echo $as_me:3622: \"$ac_link\") >&5 | 
| 3623 |  | ac_f90_v_output=`eval $ac_link 5>&1 2>&1 | grep -v 'Driving:'` | 
| 3624 |  | echo "$ac_f90_v_output" >&5 | 
| 3625 |  | F90FLAGS=$ac_save_F90FLAGS | 
| 4946 |  |  | 
| 4947 |  |  | 
| 4948 |  | # clean out junk possibly left behind by a previous configuration | 
| 4949 | < | rm -f utils/getopt.h | 
| 4949 | > | rm -f src/getopt.h | 
| 4950 |  | # Check for getopt_long support | 
| 4951 |  |  | 
| 4952 |  | for ac_header in getopt.h | 
| 5286 |  | *) LIBOBJS="$LIBOBJS getopt1.$ac_objext" ;; | 
| 5287 |  | esac | 
| 5288 |  |  | 
| 5289 | < | ac_config_links="$ac_config_links utils/getopt.h:utils/gnugetopt.h" | 
| 5289 | > | ac_config_links="$ac_config_links src/getopt.h:src/utils/gnugetopt.h" | 
| 5290 |  |  | 
| 5291 |  | fi | 
| 5292 |  |  | 
| 5380 |  | fi;; | 
| 5381 |  | *darwin*) | 
| 5382 |  | if test "$CC" = xlc -o "$CC" = cc; then | 
| 5383 | < | CFLAGS="-qthreaded -O5 -qtune=auto -qarch=auto -qunroll=auto -qaltivec" | 
| 5383 | > | CFLAGS="-qthreaded -O -qtune=auto -qarch=auto -qunroll=auto -qaltivec" | 
| 5384 |  | fi;; | 
| 5385 |  | esac | 
| 5386 |  |  | 
| 5832 |  | fi;; | 
| 5833 |  | *darwin*) | 
| 5834 |  | if test "$CXX" = xlc++; then | 
| 5835 | < | CXXFLAGS="-qthreaded -O5 -qtune=auto -qarch=auto -qunroll=auto -qaltivec" | 
| 5835 | > | CXXFLAGS="-qthreaded -O -qtune=auto -qarch=auto -qunroll=auto -qaltivec" | 
| 5836 |  | fi;; | 
| 5837 |  | esac | 
| 5838 |  |  | 
| 6244 |  | fi;; | 
| 6245 |  | *darwin*) | 
| 6246 |  | if test "$F90" = f90 -o "$F90" = xlf90 -o "$F90" = xlf95; then | 
| 6247 | < | F90FLAGS="-qthreaded -O5 -qtune=auto -qarch=auto -qunroll=auto" | 
| 6247 | > | F90FLAGS="-qthreaded -O -qtune=auto -qarch=auto -qunroll=auto" | 
| 6248 |  | fi;; | 
| 6249 |  | esac | 
| 6250 |  |  | 
| 7232 |  | echo "${ECHO_T}$ac_cv_lib_mpi_MPI_Init" >&6 | 
| 7233 |  | if test $ac_cv_lib_mpi_MPI_Init = yes; then | 
| 7234 |  | MPI_LIB="-lmpi -llam" | 
| 7235 | + | fi | 
| 7236 | + |  | 
| 7237 | + | fi | 
| 7238 | + | $as_unset ac_cv_lib_mpich_MPI_Init | 
| 7239 | + | if test x = x"$MPI_LIB"; then | 
| 7240 | + | echo "$as_me:$LINENO: checking for MPI_Init in -lmpich" >&5 | 
| 7241 | + | echo $ECHO_N "checking for MPI_Init in -lmpich... $ECHO_C" >&6 | 
| 7242 | + | if test "${ac_cv_lib_mpich_MPI_Init+set}" = set; then | 
| 7243 | + | echo $ECHO_N "(cached) $ECHO_C" >&6 | 
| 7244 | + | else | 
| 7245 | + | ac_check_lib_save_LIBS=$LIBS | 
| 7246 | + | LIBS="-lmpich "-lpmpich" $LIBS" | 
| 7247 | + | cat >conftest.$ac_ext <<_ACEOF | 
| 7248 | + | /* confdefs.h.  */ | 
| 7249 | + | _ACEOF | 
| 7250 | + | cat confdefs.h >>conftest.$ac_ext | 
| 7251 | + | cat >>conftest.$ac_ext <<_ACEOF | 
| 7252 | + | /* end confdefs.h.  */ | 
| 7253 | + |  | 
| 7254 | + | /* Override any gcc2 internal prototype to avoid an error.  */ | 
| 7255 | + | #ifdef __cplusplus | 
| 7256 | + | extern "C" | 
| 7257 | + | #endif | 
| 7258 | + | /* We use char because int might match the return type of a gcc2 | 
| 7259 | + | builtin and then its argument prototype would still apply.  */ | 
| 7260 | + | char MPI_Init (); | 
| 7261 | + | int | 
| 7262 | + | main () | 
| 7263 | + | { | 
| 7264 | + | MPI_Init (); | 
| 7265 | + | ; | 
| 7266 | + | return 0; | 
| 7267 | + | } | 
| 7268 | + | _ACEOF | 
| 7269 | + | rm -f conftest.$ac_objext conftest$ac_exeext | 
| 7270 | + | if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5 | 
| 7271 | + | (eval $ac_link) 2>conftest.er1 | 
| 7272 | + | ac_status=$? | 
| 7273 | + | grep -v '^ *+' conftest.er1 >conftest.err | 
| 7274 | + | rm -f conftest.er1 | 
| 7275 | + | cat conftest.err >&5 | 
| 7276 | + | echo "$as_me:$LINENO: \$? = $ac_status" >&5 | 
| 7277 | + | (exit $ac_status); } && | 
| 7278 | + | { ac_try='test -z "$ac_c_werror_flag" | 
| 7279 | + | || test ! -s conftest.err' | 
| 7280 | + | { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 | 
| 7281 | + | (eval $ac_try) 2>&5 | 
| 7282 | + | ac_status=$? | 
| 7283 | + | echo "$as_me:$LINENO: \$? = $ac_status" >&5 | 
| 7284 | + | (exit $ac_status); }; } && | 
| 7285 | + | { ac_try='test -s conftest$ac_exeext' | 
| 7286 | + | { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5 | 
| 7287 | + | (eval $ac_try) 2>&5 | 
| 7288 | + | ac_status=$? | 
| 7289 | + | echo "$as_me:$LINENO: \$? = $ac_status" >&5 | 
| 7290 | + | (exit $ac_status); }; }; then | 
| 7291 | + | ac_cv_lib_mpich_MPI_Init=yes | 
| 7292 | + | else | 
| 7293 | + | echo "$as_me: failed program was:" >&5 | 
| 7294 | + | sed 's/^/| /' conftest.$ac_ext >&5 | 
| 7295 | + |  | 
| 7296 | + | ac_cv_lib_mpich_MPI_Init=no | 
| 7297 | + | fi | 
| 7298 | + | rm -f conftest.err conftest.$ac_objext \ | 
| 7299 | + | conftest$ac_exeext conftest.$ac_ext | 
| 7300 | + | LIBS=$ac_check_lib_save_LIBS | 
| 7301 | + | fi | 
| 7302 | + | echo "$as_me:$LINENO: result: $ac_cv_lib_mpich_MPI_Init" >&5 | 
| 7303 | + | echo "${ECHO_T}$ac_cv_lib_mpich_MPI_Init" >&6 | 
| 7304 | + | if test $ac_cv_lib_mpich_MPI_Init = yes; then | 
| 7305 | + | MPI_LIB="-lmpich -lpmpich" | 
| 7306 |  | fi | 
| 7307 |  |  | 
| 7308 |  | fi | 
| 7822 |  |  | 
| 7823 |  | echo "$as_me:$LINENO: result: no" >&5 | 
| 7824 |  | echo "${ECHO_T}no" >&6 | 
| 7825 | + |  | 
| 7826 | + | fi; | 
| 7827 | + |  | 
| 7828 | + |  | 
| 7829 | + |  | 
| 7830 | + | # Check whether --enable-doxygen or --disable-doxygen was given. | 
| 7831 | + | if test "${enable_doxygen+set}" = set; then | 
| 7832 | + | enableval="$enable_doxygen" | 
| 7833 |  |  | 
| 7834 |  | fi; | 
| 7835 | + | # Check whether --enable-dot or --disable-dot was given. | 
| 7836 | + | if test "${enable_dot+set}" = set; then | 
| 7837 | + | enableval="$enable_dot" | 
| 7838 | + |  | 
| 7839 | + | fi; | 
| 7840 | + | # Check whether --enable-html-docs or --disable-html-docs was given. | 
| 7841 | + | if test "${enable_html_docs+set}" = set; then | 
| 7842 | + | enableval="$enable_html_docs" | 
| 7843 | + |  | 
| 7844 | + | else | 
| 7845 | + | enable_html_docs=yes | 
| 7846 | + | fi; | 
| 7847 | + | # Check whether --enable-latex-docs or --disable-latex-docs was given. | 
| 7848 | + | if test "${enable_latex_docs+set}" = set; then | 
| 7849 | + | enableval="$enable_latex_docs" | 
| 7850 | + |  | 
| 7851 | + | else | 
| 7852 | + | enable_latex_docs=no | 
| 7853 | + | fi; | 
| 7854 | + | if test "x$enable_doxygen" = xno; then | 
| 7855 | + | enable_doc=no | 
| 7856 | + | else | 
| 7857 | + | # Extract the first word of "doxygen", so it can be a program name with args. | 
| 7858 | + | set dummy doxygen; ac_word=$2 | 
| 7859 | + | echo "$as_me:$LINENO: checking for $ac_word" >&5 | 
| 7860 | + | echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 | 
| 7861 | + | if test "${ac_cv_path_DOXYGEN+set}" = set; then | 
| 7862 | + | echo $ECHO_N "(cached) $ECHO_C" >&6 | 
| 7863 | + | else | 
| 7864 | + | case $DOXYGEN in | 
| 7865 | + | [\\/]* | ?:[\\/]*) | 
| 7866 | + | ac_cv_path_DOXYGEN="$DOXYGEN" # Let the user override the test with a path. | 
| 7867 | + | ;; | 
| 7868 | + | *) | 
| 7869 | + | as_save_IFS=$IFS; IFS=$PATH_SEPARATOR | 
| 7870 | + | for as_dir in $PATH | 
| 7871 | + | do | 
| 7872 | + | IFS=$as_save_IFS | 
| 7873 | + | test -z "$as_dir" && as_dir=. | 
| 7874 | + | for ac_exec_ext in '' $ac_executable_extensions; do | 
| 7875 | + | if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then | 
| 7876 | + | ac_cv_path_DOXYGEN="$as_dir/$ac_word$ac_exec_ext" | 
| 7877 | + | echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 | 
| 7878 | + | break 2 | 
| 7879 | + | fi | 
| 7880 | + | done | 
| 7881 | + | done | 
| 7882 |  |  | 
| 7883 | + | ;; | 
| 7884 | + | esac | 
| 7885 | + | fi | 
| 7886 | + | DOXYGEN=$ac_cv_path_DOXYGEN | 
| 7887 |  |  | 
| 7888 | + | if test -n "$DOXYGEN"; then | 
| 7889 | + | echo "$as_me:$LINENO: result: $DOXYGEN" >&5 | 
| 7890 | + | echo "${ECHO_T}$DOXYGEN" >&6 | 
| 7891 | + | else | 
| 7892 | + | echo "$as_me:$LINENO: result: no" >&5 | 
| 7893 | + | echo "${ECHO_T}no" >&6 | 
| 7894 | + | fi | 
| 7895 |  |  | 
| 7896 | + | if test "x$DOXYGEN" = x; then | 
| 7897 | + | if test "x$enable_doxygen" = xyes; then | 
| 7898 | + | { { echo "$as_me:$LINENO: error: could not find doxygen" >&5 | 
| 7899 | + | echo "$as_me: error: could not find doxygen" >&2;} | 
| 7900 | + | { (exit 1); exit 1; }; } | 
| 7901 | + | fi | 
| 7902 | + | enable_doc=no | 
| 7903 | + | else | 
| 7904 | + | enable_doc=yes | 
| 7905 | + | # Extract the first word of "dot", so it can be a program name with args. | 
| 7906 | + | set dummy dot; ac_word=$2 | 
| 7907 | + | echo "$as_me:$LINENO: checking for $ac_word" >&5 | 
| 7908 | + | echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 | 
| 7909 | + | if test "${ac_cv_path_DOT+set}" = set; then | 
| 7910 | + | echo $ECHO_N "(cached) $ECHO_C" >&6 | 
| 7911 | + | else | 
| 7912 | + | case $DOT in | 
| 7913 | + | [\\/]* | ?:[\\/]*) | 
| 7914 | + | ac_cv_path_DOT="$DOT" # Let the user override the test with a path. | 
| 7915 | + | ;; | 
| 7916 | + | *) | 
| 7917 | + | as_save_IFS=$IFS; IFS=$PATH_SEPARATOR | 
| 7918 | + | for as_dir in $PATH | 
| 7919 | + | do | 
| 7920 | + | IFS=$as_save_IFS | 
| 7921 | + | test -z "$as_dir" && as_dir=. | 
| 7922 | + | for ac_exec_ext in '' $ac_executable_extensions; do | 
| 7923 | + | if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then | 
| 7924 | + | ac_cv_path_DOT="$as_dir/$ac_word$ac_exec_ext" | 
| 7925 | + | echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 | 
| 7926 | + | break 2 | 
| 7927 | + | fi | 
| 7928 | + | done | 
| 7929 | + | done | 
| 7930 | + |  | 
| 7931 | + | ;; | 
| 7932 | + | esac | 
| 7933 | + | fi | 
| 7934 | + | DOT=$ac_cv_path_DOT | 
| 7935 | + |  | 
| 7936 | + | if test -n "$DOT"; then | 
| 7937 | + | echo "$as_me:$LINENO: result: $DOT" >&5 | 
| 7938 | + | echo "${ECHO_T}$DOT" >&6 | 
| 7939 | + | else | 
| 7940 | + | echo "$as_me:$LINENO: result: no" >&5 | 
| 7941 | + | echo "${ECHO_T}no" >&6 | 
| 7942 | + | fi | 
| 7943 | + |  | 
| 7944 | + | fi | 
| 7945 | + | fi | 
| 7946 | + |  | 
| 7947 | + | if test "x$enable_doc" = xyes; then | 
| 7948 | + | DOC=1 | 
| 7949 | + | else | 
| 7950 | + | DOC=0 | 
| 7951 | + | fi | 
| 7952 |  |  | 
| 7953 |  |  | 
| 7954 | + | if test x$DOT = x; then | 
| 7955 | + | if test "x$enable_dot" = xyes; then | 
| 7956 | + | { { echo "$as_me:$LINENO: error: could not find dot" >&5 | 
| 7957 | + | echo "$as_me: error: could not find dot" >&2;} | 
| 7958 | + | { (exit 1); exit 1; }; } | 
| 7959 | + | fi | 
| 7960 | + | enable_dot=no | 
| 7961 | + | else | 
| 7962 | + | enable_dot=yes | 
| 7963 | + | fi | 
| 7964 | + |  | 
| 7965 | + |  | 
| 7966 | + |  | 
| 7967 | + |  | 
| 7968 | + |  | 
| 7969 | + |  | 
| 7970 | + |  | 
| 7971 |  | OBJEXT=".$OBJEXT" | 
| 7972 |  |  | 
| 7973 |  | OOPSE=oopse | 
| 8027 |  |  | 
| 8028 |  | ac_config_headers="$ac_config_headers src/config.h" | 
| 8029 |  |  | 
| 8030 | < | ac_config_files="$ac_config_files make/Makefile" | 
| 8030 | > | ac_config_files="$ac_config_files make/Makefile src/utils/Makefile" | 
| 8031 |  |  | 
| 8032 |  |  | 
| 8033 |  | cat >confcache <<\_ACEOF | 
| 8559 |  | case "$ac_config_target" in | 
| 8560 |  | # Handling of arguments. | 
| 8561 |  | "make/Makefile" ) CONFIG_FILES="$CONFIG_FILES make/Makefile" ;; | 
| 8562 | < | "utils/getopt.h" ) CONFIG_LINKS="$CONFIG_LINKS utils/getopt.h:utils/gnugetopt.h" ;; | 
| 8562 | > | "src/utils/Makefile" ) CONFIG_FILES="$CONFIG_FILES src/utils/Makefile" ;; | 
| 8563 | > | "src/getopt.h" ) CONFIG_LINKS="$CONFIG_LINKS src/getopt.h:src/utils/gnugetopt.h" ;; | 
| 8564 |  | "src/config.h" ) CONFIG_HEADERS="$CONFIG_HEADERS src/config.h" ;; | 
| 8565 |  | *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5 | 
| 8566 |  | echo "$as_me: error: invalid argument: $ac_config_target" >&2;} | 
| 8711 |  | s,@MKL_LIB@,$MKL_LIB,;t t | 
| 8712 |  | s,@MKL_INC@,$MKL_INC,;t t | 
| 8713 |  | s,@HAVE_MKL@,$HAVE_MKL,;t t | 
| 8714 | + | s,@DOXYGEN@,$DOXYGEN,;t t | 
| 8715 | + | s,@DOT@,$DOT,;t t | 
| 8716 | + | s,@DOC@,$DOC,;t t | 
| 8717 | + | s,@enable_dot@,$enable_dot,;t t | 
| 8718 | + | s,@enable_html_docs@,$enable_html_docs,;t t | 
| 8719 | + | s,@enable_latex_docs@,$enable_latex_docs,;t t | 
| 8720 |  | s,@BATEXT@,$BATEXT,;t t | 
| 8721 |  | s,@MKINSTALLDIRS@,$MKINSTALLDIRS,;t t | 
| 8722 |  | s,@OOPSE@,$OOPSE,;t t |