| 312 |  | # include <unistd.h> | 
| 313 |  | #endif" | 
| 314 |  |  | 
| 315 | < | ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PROGNAME debug build build_cpu build_vendor build_os host host_cpu host_vendor host_os CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT CXX CXXFLAGS ac_ct_CXX OOPSE_TEMPLATE_FLAGS EXTRA_CC_FLAG F90 F90FLAGS ac_ct_F90 PREPFLAG PREPDEFFLAG F90LIBS F90_FUNC F90_FUNC_ MOD F90_WORK_FILES_ARG MODDIRFLAG F90MODINCSPEC F90_MODULE_NAMES CPP EGREP LIBOBJS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S SET_MAKE RANLIB ac_ct_RANLIB YACC LEX LEXLIB LEX_OUTPUT_ROOT AR PS MPI_LIB_DIR MPI_INC_DIR MPI_F90_INC MPI_LIB MPI_F90_LIB USE_MPI CXXCPP USE_CGAL CGAL_INC_DIR CGAL_LIB_DIR CGAL_RLIB_DIR CGAL_DEFINES CGAL_CXXFLAGS CGAL_LIBS DOXYGEN DOT DOC enable_dot enable_html_docs enable_latex_docs BATEXT MKINSTALLDIRS OOPSE OOPSE_HOME SUBDIRS FFLAGS LTLIBOBJS' | 
| 315 | > | ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PROGNAME debug build build_cpu build_vendor build_os host host_cpu host_vendor host_os CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT CXX CXXFLAGS ac_ct_CXX OOPSE_TEMPLATE_FLAGS EXTRA_CC_FLAG F90 F90FLAGS ac_ct_F90 PREPFLAG PREPDEFFLAG F90LIBS F90_FUNC F90_FUNC_ MOD F90_WORK_FILES_ARG MODDIRFLAG F90MODINCSPEC F90_MODULE_NAMES CPP EGREP LIBOBJS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S SET_MAKE RANLIB ac_ct_RANLIB YACC LEX LEXLIB LEX_OUTPUT_ROOT PERLINTERP PERL_SHEBANG AR PS MPI_LIB_DIR MPI_INC_DIR MPI_F90_INC MPI_LIB MPI_F90_LIB USE_MPI CXXCPP USE_CGAL CGAL_INC_DIR CGAL_LIB_DIR CGAL_RLIB_DIR CGAL_DEFINES CGAL_CXXFLAGS CGAL_LIBS DOXYGEN DOT DOC enable_dot enable_html_docs enable_latex_docs BATEXT MKINSTALLDIRS OOPSE OOPSE_HOME SUBDIRS FFLAGS LTLIBOBJS' | 
| 316 |  | ac_subst_files='' | 
| 317 |  |  | 
| 318 |  | # Initialize some variables set by options. | 
| 879 |  | Optional Packages: | 
| 880 |  | --with-PACKAGE[=ARG]    use PACKAGE [ARG=yes] | 
| 881 |  | --without-PACKAGE       do not use PACKAGE (same as --with-PACKAGE=no) | 
| 882 | + | --with-perl-shebang     override what perl thinks is the way for the kernel | 
| 883 | + | to start it (seldom needed) | 
| 884 |  | --with-mpi=<prefix>     compile with MPI installed in <prefix> [default=no] | 
| 885 |  | --with-cgal-makefile=FILE  CGAL makefile that should be used | 
| 886 |  |  | 
| 1882 |  |  | 
| 1883 |  |  | 
| 1884 |  |  | 
| 1885 | < |  | 
| 1885 | > | # | 
| 1886 | > | # | 
| 1887 | > | # | 
| 1888 |  |  | 
| 1889 |  |  | 
| 1890 |  |  | 
| 3550 |  | ac_save_F90FLAGS=$F90FLAGS | 
| 3551 |  | F90FLAGS="$F90FLAGS $ac_verb" | 
| 3552 |  |  | 
| 3553 | < | (eval echo $as_me:3549: \"$ac_link\") >&5 | 
| 3553 | > | (eval echo $as_me:3553: \"$ac_link\") >&5 | 
| 3554 |  | ac_f90_v_output=`eval $ac_link 5>&1 2>&1 | grep -v 'Driving:'` | 
| 3555 |  | echo "$ac_f90_v_output" >&5 | 
| 3556 |  | F90FLAGS=$ac_save_F90FLAGS | 
| 3627 |  | ac_save_F90FLAGS=$F90FLAGS | 
| 3628 |  | F90FLAGS="$F90FLAGS $ac_cv_prog_f90_v" | 
| 3629 |  |  | 
| 3630 | < | (eval echo $as_me:3626: \"$ac_link\") >&5 | 
| 3630 | > | (eval echo $as_me:3630: \"$ac_link\") >&5 | 
| 3631 |  | ac_f90_v_output=`eval $ac_link 5>&1 2>&1 | grep -v 'Driving:'` | 
| 3632 |  | echo "$ac_f90_v_output" >&5 | 
| 3633 |  | F90FLAGS=$ac_save_F90FLAGS | 
| 7166 |  | fi | 
| 7167 |  |  | 
| 7168 |  | fi | 
| 7169 | + |  | 
| 7170 | + | # Extract the first word of "perl", so it can be a program name with args. | 
| 7171 | + | set dummy perl; ac_word=$2 | 
| 7172 | + | echo "$as_me:$LINENO: checking for $ac_word" >&5 | 
| 7173 | + | echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6 | 
| 7174 | + | if test "${ac_cv_path_PERLINTERP+set}" = set; then | 
| 7175 | + | echo $ECHO_N "(cached) $ECHO_C" >&6 | 
| 7176 | + | else | 
| 7177 | + | case $PERLINTERP in | 
| 7178 | + | [\\/]* | ?:[\\/]*) | 
| 7179 | + | ac_cv_path_PERLINTERP="$PERLINTERP" # Let the user override the test with a path. | 
| 7180 | + | ;; | 
| 7181 | + | *) | 
| 7182 | + | as_save_IFS=$IFS; IFS=$PATH_SEPARATOR | 
| 7183 | + | for as_dir in $PATH | 
| 7184 | + | do | 
| 7185 | + | IFS=$as_save_IFS | 
| 7186 | + | test -z "$as_dir" && as_dir=. | 
| 7187 | + | for ac_exec_ext in '' $ac_executable_extensions; do | 
| 7188 | + | if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then | 
| 7189 | + | ac_cv_path_PERLINTERP="$as_dir/$ac_word$ac_exec_ext" | 
| 7190 | + | echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 | 
| 7191 | + | break 2 | 
| 7192 | + | fi | 
| 7193 | + | done | 
| 7194 | + | done | 
| 7195 | + |  | 
| 7196 | + | test -z "$ac_cv_path_PERLINTERP" && ac_cv_path_PERLINTERP="perl" | 
| 7197 | + | ;; | 
| 7198 | + | esac | 
| 7199 | + | fi | 
| 7200 | + | PERLINTERP=$ac_cv_path_PERLINTERP | 
| 7201 | + |  | 
| 7202 | + | if test -n "$PERLINTERP"; then | 
| 7203 | + | echo "$as_me:$LINENO: result: $PERLINTERP" >&5 | 
| 7204 | + | echo "${ECHO_T}$PERLINTERP" >&6 | 
| 7205 | + | else | 
| 7206 | + | echo "$as_me:$LINENO: result: no" >&5 | 
| 7207 | + | echo "${ECHO_T}no" >&6 | 
| 7208 | + | fi | 
| 7209 | + |  | 
| 7210 | + | ac_cv_path_perlinterp="$PERLINTERP" | 
| 7211 | + | _sHpB='#!' | 
| 7212 | + |  | 
| 7213 | + |  | 
| 7214 | + | # Check whether --with-perl-shebang or --without-perl-shebang was given. | 
| 7215 | + | if test "${with_perl_shebang+set}" = set; then | 
| 7216 | + | withval="$with_perl_shebang" | 
| 7217 | + | opt_perl_shebang="$withval" | 
| 7218 | + | else | 
| 7219 | + | opt_perl_shebang="not_set" | 
| 7220 | + | fi; | 
| 7221 | + | echo "$as_me:$LINENO: checking whether explicit instead of detected sharpbang is to be used" >&5 | 
| 7222 | + | echo $ECHO_N "checking whether explicit instead of detected sharpbang is to be used... $ECHO_C" >&6 | 
| 7223 | + | if test "${ax_cv_opt_perl_shebang+set}" = set; then | 
| 7224 | + | echo $ECHO_N "(cached) $ECHO_C" >&6 | 
| 7225 | + | else | 
| 7226 | + | case "$opt_perl_shebang" in | 
| 7227 | + | not_set  ) ax_cv_opt_perl_shebang='' | 
| 7228 | + | ;; | 
| 7229 | + | *     ) | 
| 7230 | + | ax_cv_opt_perl_shebang=`echo "$opt_perl_shebang" | sed -e's|^#!\s*\(.*\)$|\1|'` | 
| 7231 | + | esac | 
| 7232 | + |  | 
| 7233 | + | fi | 
| 7234 | + | echo "$as_me:$LINENO: result: $ax_cv_opt_perl_shebang" >&5 | 
| 7235 | + | echo "${ECHO_T}$ax_cv_opt_perl_shebang" >&6 | 
| 7236 | + | if test "A$ax_cv_opt_perl_shebang" != "A" | 
| 7237 | + | then | 
| 7238 | + | ac_cv_sys_kernshrpbang_perl="$ax_cv_opt_perl_shebang" | 
| 7239 | + | PERL_SHEBANG="$ac_cv_sys_kernshrpbang_perl" | 
| 7240 | + | { echo "$as_me:$LINENO: OK - PERL_SHEBANG is $_sHpB$PERL_SHEBANG." >&5 | 
| 7241 | + | echo "$as_me: OK - PERL_SHEBANG is $_sHpB$PERL_SHEBANG." >&6;} | 
| 7242 | + |  | 
| 7243 | + | # Automatic detection of sharpbang formula starts here | 
| 7244 | + | else | 
| 7245 | + | _somian_shbangperl=`$PERLINTERP -V:startperl` | 
| 7246 | + | negclass="[^']"; # must leave this comment:  m4 will remove the outer brackets for us, heheh | 
| 7247 | + | echo "$as_me:$LINENO: checking for kernel sharpbang invocation to start perl" >&5 | 
| 7248 | + | echo $ECHO_N "checking for kernel sharpbang invocation to start perl... $ECHO_C" >&6 | 
| 7249 | + | if test "${ac_cv_sys_kernshrpbang_perl+set}" = set; then | 
| 7250 | + | echo $ECHO_N "(cached) $ECHO_C" >&6 | 
| 7251 | + | else | 
| 7252 | + | _somian_kspb_perl=`echo "$_somian_shbangperl" | sed -ne"s|.*='\($negclass*\)';$|\1|p"` | 
| 7253 | + | if test "x$_somian_kspb_perl" == x | 
| 7254 | + | then _somian_ksbp_warn_empty='durnit' | 
| 7255 | + | else | 
| 7256 | + | case "A$_somian_kspb_perl" in | 
| 7257 | + | A#!*perl* ) | 
| 7258 | + | ac_cv_sys_kernshrpbang_perl=`echo "$_somian_kspb_perl" | sed -e's|#!\(.*\)$|\1|'` | 
| 7259 | + | ;; | 
| 7260 | + | A*    )  _somian_ksbp_warn_defau='trouble' | 
| 7261 | + | ac_cv_sys_kernshrpbang_perl="$PERLINTERP" | 
| 7262 | + | esac | 
| 7263 | + | fi | 
| 7264 | + |  | 
| 7265 | + | fi | 
| 7266 | + | echo "$as_me:$LINENO: result: $ac_cv_sys_kernshrpbang_perl" >&5 | 
| 7267 | + | echo "${ECHO_T}$ac_cv_sys_kernshrpbang_perl" >&6 | 
| 7268 | + | # The above prints Checking ... result message to user. | 
| 7269 | + | PERL_SHEBANG="$ac_cv_sys_kernshrpbang_perl" | 
| 7270 | + |  | 
| 7271 | + | if test A${_somian_ksbp_warn_empty+set} == Aset | 
| 7272 | + | then   { echo "$as_me:$LINENO: WARNING: In last check, doing $PERLINTERP -V:startperl yielded empty result! That should not happen." >&5 | 
| 7273 | + | echo "$as_me: WARNING: In last check, doing $PERLINTERP -V:startperl yielded empty result! That should not happen." >&2;} | 
| 7274 | + | fi | 
| 7275 | + | # Inform user after printing result value | 
| 7276 | + | if test A${_somian_ksbp_warn_defau+set} == Aset | 
| 7277 | + | then { echo "$as_me:$LINENO: Maybe Not good -" >&5 | 
| 7278 | + | echo "$as_me: Maybe Not good -" >&6;} | 
| 7279 | + | { echo "$as_me:$LINENO: WARNING: In last check perl's Config query did not work so we bunted: $_sHpB$PERLINTERP" >&5 | 
| 7280 | + | echo "$as_me: WARNING: In last check perl's Config query did not work so we bunted: $_sHpB$PERLINTERP" >&2;} | 
| 7281 | + | else { echo "$as_me:$LINENO: OK Good result - " >&5 | 
| 7282 | + | echo "$as_me: OK Good result - " >&6;} | 
| 7283 | + | { echo "$as_me:$LINENO: In last check we got a proper-looking answer from perl's Config: $_somian_shbangperl" >&5 | 
| 7284 | + | echo "$as_me: In last check we got a proper-looking answer from perl's Config: $_somian_shbangperl" >&6;} | 
| 7285 | + | fi | 
| 7286 | + | fi | 
| 7287 | + |  | 
| 7288 |  | # Extract the first word of "ar", so it can be a program name with args. | 
| 7289 |  | set dummy ar; ac_word=$2 | 
| 7290 |  | echo "$as_me:$LINENO: checking for $ac_word" >&5 | 
| 8819 |  |  | 
| 8820 |  | ac_config_headers="$ac_config_headers src/config.h" | 
| 8821 |  |  | 
| 8822 | < | ac_config_files="$ac_config_files make/Makefile src/utils/Makefile src/applications/nanoRodBuilder/Makefile" | 
| 8822 | > | ac_config_files="$ac_config_files make/Makefile src/utils/Makefile src/applications/nanoRodBuilder/Makefile scripts/filepp" | 
| 8823 |  |  | 
| 8824 |  |  | 
| 8825 |  | cat >confcache <<\_ACEOF | 
| 9353 |  | "make/Makefile" ) CONFIG_FILES="$CONFIG_FILES make/Makefile" ;; | 
| 9354 |  | "src/utils/Makefile" ) CONFIG_FILES="$CONFIG_FILES src/utils/Makefile" ;; | 
| 9355 |  | "src/applications/nanoRodBuilder/Makefile" ) CONFIG_FILES="$CONFIG_FILES src/applications/nanoRodBuilder/Makefile" ;; | 
| 9356 | + | "scripts/filepp" ) CONFIG_FILES="$CONFIG_FILES scripts/filepp" ;; | 
| 9357 |  | "src/getopt.h" ) CONFIG_LINKS="$CONFIG_LINKS src/getopt.h:src/utils/gnugetopt.h" ;; | 
| 9358 |  | "src/config.h" ) CONFIG_HEADERS="$CONFIG_HEADERS src/config.h" ;; | 
| 9359 |  | *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5 | 
| 9490 |  | s,@LEX@,$LEX,;t t | 
| 9491 |  | s,@LEXLIB@,$LEXLIB,;t t | 
| 9492 |  | s,@LEX_OUTPUT_ROOT@,$LEX_OUTPUT_ROOT,;t t | 
| 9493 | + | s,@PERLINTERP@,$PERLINTERP,;t t | 
| 9494 | + | s,@PERL_SHEBANG@,$PERL_SHEBANG,;t t | 
| 9495 |  | s,@AR@,$AR,;t t | 
| 9496 |  | s,@PS@,$PS,;t t | 
| 9497 |  | s,@MPI_LIB_DIR@,$MPI_LIB_DIR,;t t | 
| 9757 |  | rm -f $tmp/out | 
| 9758 |  | fi | 
| 9759 |  |  | 
| 9760 | + | # Run the commands associated with the file. | 
| 9761 | + | case $ac_file in | 
| 9762 | + | make/Makefile ) chmod 0755 scripts/* ;; | 
| 9763 | + | src/utils/Makefile ) chmod 0755 scripts/* ;; | 
| 9764 | + | src/applications/nanoRodBuilder/Makefile ) chmod 0755 scripts/* ;; | 
| 9765 | + | scripts/filepp ) chmod 0755 scripts/* ;; | 
| 9766 | + | esac | 
| 9767 |  | done | 
| 9768 |  | _ACEOF | 
| 9769 |  | cat >>$CONFIG_STATUS <<\_ACEOF |