--- trunk/configure	2006/09/04 13:37:15	1036
+++ trunk/configure	2006/10/10 14:36:02	1064
@@ -14106,7 +14106,7 @@ fi
 
 
 
-                                                            ac_config_files="$ac_config_files make/Makefile src/utils/Makefile src/applications/nanoRodBuilder/Makefile src/applications/utilities/affineScale src/applications/utilities/waterBoxer scripts/filepp"
+                                                            ac_config_files="$ac_config_files make/Makefile src/utils/Makefile src/applications/nanoRodBuilder/Makefile scripts/filepp"
 
 
 cat >confcache <<\_ACEOF
@@ -14640,8 +14640,6 @@ do
   "make/Makefile" ) CONFIG_FILES="$CONFIG_FILES make/Makefile" ;;
   "src/utils/Makefile" ) CONFIG_FILES="$CONFIG_FILES src/utils/Makefile" ;;
   "src/applications/nanoRodBuilder/Makefile" ) CONFIG_FILES="$CONFIG_FILES src/applications/nanoRodBuilder/Makefile" ;;
-  "src/applications/utilities/affineScale" ) CONFIG_FILES="$CONFIG_FILES src/applications/utilities/affineScale" ;;
-  "src/applications/utilities/waterBoxer" ) CONFIG_FILES="$CONFIG_FILES src/applications/utilities/waterBoxer" ;;
   "scripts/filepp" ) CONFIG_FILES="$CONFIG_FILES scripts/filepp" ;;
   "src/getopt.h" ) CONFIG_LINKS="$CONFIG_LINKS src/getopt.h:src/utils/gnugetopt.h" ;;
   "src/config.h" ) CONFIG_HEADERS="$CONFIG_HEADERS src/config.h" ;;
@@ -15054,8 +15052,6 @@ s,@INSTALL@,$ac_INSTALL,;t t
     make/Makefile ) chmod 0755 scripts/* ;;
     src/utils/Makefile ) chmod 0755 scripts/* ;;
     src/applications/nanoRodBuilder/Makefile ) chmod 0755 scripts/* ;;
-    src/applications/utilities/affineScale ) chmod 0755 scripts/* ;;
-    src/applications/utilities/waterBoxer ) chmod 0755 scripts/* ;;
     scripts/filepp ) chmod 0755 scripts/* ;;
   esac
 done