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root/OpenMD/branches/development/CMakeLists.txt
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Comparing branches/development/CMakeLists.txt (file contents):
Revision 1626 by gezelter, Tue Sep 13 15:39:54 2011 UTC vs.
Revision 1650 by gezelter, Tue Sep 27 12:42:03 2011 UTC

# Line 3 | Line 3 | project(OpenMD)
3   cmake_minimum_required (VERSION 2.6)
4   project(OpenMD)
5  
6 –
6   # OpenMD version number.
7   set (VERSION_MAJOR "2")
8   set (VERSION_MINOR "0")
9   set (VERSION_TINY "0")  
10  
11   # cmake modules that are needed to build oopse
12 < set (CMAKE_MODULE_PATH ${OpenMD_SOURCE_DIR}/cmake/modules)
12 > SET(CMAKE_MODULE_PATH ${OpenMD_SOURCE_DIR}/cmake/modules)
13 > IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
14 >  SET(CMAKE_INSTALL_PREFIX
15 >    "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
16 >    )
17 > ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
18  
19 + # ---------- Setup output Directories -------------------------
20 + SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
21 +  ${PROJECT_BINARY_DIR}/lib
22 +  CACHE PATH
23 +  "Single directory for all shared libraries"
24 +  )
25 + # --------- Setup the Executable output Directory -------------
26 + SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
27 +  ${PROJECT_BINARY_DIR}/bin
28 +  CACHE PATH
29 +  "Single directory for all Executables."
30 +  )
31 + # --------- Setup the static library directory -------------
32 + SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
33 +  ${PROJECT_BINARY_DIR}/lib
34 +  CACHE PATH
35 +  "Single directory for all static libraries."
36 +  )
37 +
38 +
39   enable_language(CXX  C)
40  
41 + if ( APPLE )
42 + set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
43 + set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
44 + endif( APPLE )
45 + FIND_PACKAGE(MPI)
46 + IF ( MPI_FOUND )
47 +  SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
48 +  INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
49 + ENDIF()
50  
51 + FIND_PACKAGE(Subversion)
52 + IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
53 +  Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
54 +  MESSAGE("Current revision is ${Project_WC_REVISION}")
55 +  Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
56 +  SET(SVN_REV ${Project_WC_REVISION})
57 +  ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
58 + ENDIF()
59 +
60   # Optional libraries: If we can find these, we will build with them
61   # Look for OpenBabel libraries
62   find_package(OpenBabel2)
# Line 33 | Line 75 | ENDIF(QHULL_FOUND)
75    LINK_LIBRARIES(${QHULL_LIBRARIES})
76   ENDIF(QHULL_FOUND)
77  
36 – #Figure out MPI stuff
37 – find_package(MPI)
38 – if(MPI_FOUND)
39 – SET(IS_MPI 1)
40 – #add_definitions(-DIS_MPI)
41 – endif(MPI_FOUND)
78  
43 – #Add subversion Information
44 – find_package(Subversion)
45 – if(Subversion_FOUND)
46 –  Subversion_WC_INFO(${CMAKE_CURRENT_SOURCE_DIR} ER)
47 –  set(SUBVERSION_REVISION ${ER_WC_REVISION})
48 – endif(Subversion_FOUND)
49 – set(CPACK_PACKAGE_VERSION_PATCH "${SUBVERSION_REVISION}")
50 –
79   # zlib stuff
80   find_package(ZLIB)
81   if(ZLIB_FOUND)
# Line 73 | Line 101 | CHECK_INCLUDE_FILE(cmath.h HAVE_CMATH_H)
101   CHECK_INCLUDE_FILE(fftw.h HAVE_FFWT_H)
102   CHECK_INCLUDE_FILE(dfftw.h HAVE_DFFTW_H)
103   CHECK_INCLUDE_FILE(cmath.h HAVE_CMATH_H)
104 < check_include_file (errno.h HAVE_ERRNO_H)
105 < check_include_file (inttypes.h HAVE_INTTYPES_H)
106 < check_include_file (limits.h HAVE_LIMITS_H)
107 < check_include_file (math.h HAVE_MATH_H)
108 < check_include_file (memory.h HAVE_MEMORY_H)
81 < check_include_file (stdint.h HAVE_STDINT_H)
82 < check_include_file (stdio.h HAVE_STDIO_H)
83 < check_include_file (stdlib.h HAVE_STDLIB_H)
84 < check_include_file (strings.h HAVE_STRINGS_H)
85 < check_include_file (string.h HAVE_STRING_H)
86 < check_include_file ("sys/param.h" HAVE_SYS_PARAM_H)
87 < check_include_file ("sys/pstat.h" HAVE_SYS_PSTAT_H)
88 < check_include_file ("sys/select.h" HAVE_SYS_SELECT_H)
89 < check_include_file ("sys/socket.h" HAVE_SYS_SOCKET_H)
90 < check_include_file ("sys/stat.h" HAVE_SYS_STAT_H)
91 < check_include_file ("sys/sysctl.h" HAVE_SYS_SYSCTL_H)
92 < check_include_file ("sys/sysinfo.h" HAVE_SYS_SYSINFO_H)
93 < check_include_file ("sys/param.h" HAVE_SYS_PARAM_H)
94 < check_include_file ("sys/sysmp.h" HAVE_SYS_SYSMP_H)
95 < check_include_file ("sys/systemcfg.h" HAVE_SYS_SYSTEMCFG_H)
96 < check_include_file ("sys/table.h" HAVE_SYS_TABLE_H)
104 > check_include_file(limits.h HAVE_LIMITS_H)
105 > check_include_file(stdlib.h HAVE_STDLIB_H)
106 > check_include_file(string.h HAVE_STRING_H)
107 > check_include_file("sys/ioctl.h" HAVE_SYS_IOCTL_H)
108 > check_include_file(unistd.h HAVE_UNISTD_H)
109  
98 – find_path (HAVE_SYS_STAT_H stat.h
99 –  PATHS ${include_locations}
100 –  PATH_SUFFIXES sys
101 – )
102 –
103 – find_path (HAVE_SYS_TYPES_H types.h
104 –  PATHS ${include_locations}
105 –  PATH_SUFFIXES sys
106 – )
107 – find_path (HAVE_UNISTD_H unistd.h ${include_locations})
108 –
110   #symbol checks
111   include(CheckSymbolExists)
112  
112 –
113   #function checks
114   include(CheckFunctionExists)
115 + check_function_exists(atexit HAVE_ATEXIT)
116   check_function_exists(floor HAVE_FLOOR)
117 < check_function_exists (memset HAVE_MEMSET)
118 < check_function_exists (pow HAVE_POW)
119 < check_function_exists (sqrt HAVE_SQRT)
120 < check_function_exists (strchr HAVE_STRCHR)
121 < check_function_exists (strstr HAVE_STRSTR)
122 < check_function_exists (sysmp HAVE_SYSMP)
123 < check_function_exists (table HAVE_TABLE)
117 > check_function_exists(pow HAVE_POW)
118 > check_function_exists(select HAVE_SELECT)
119 > check_function_exists(sqrt HAVE_SQRT)
120 > check_function_exists(strcasecmp HAVE_STRCASECMP)
121 > check_function_exists(strchr HAVE_STRCHR)
122 > check_function_exists(strdup HAVE_STRDUP)
123 > check_function_exists(strncasecmp HAVE_STRNCASECMP)
124 > check_function_exists(strstr HAVE_STRSTR)
125 > check_function_exists(strtol HAVE_STRTOL)
126 > check_function_exists(strtoull HAVE_STRTOULL)
127 > check_function_exists(sysmp HAVE_SYSMP)
128 > check_function_exists(table HAVE_TABLE)
129  
130  
131 + FIND_PACKAGE(Perl)
132 + IF(PERL_FOUND)
133 +  SET(PERL ${PERL_EXECUTABLE})
134 + ELSE(PERL_FOUND)
135 +  MESSAGE(STATUS "Failed to find perl")
136 + ENDIF(PERL_FOUND)
137  
138 < include(CMakePrintSystemInformation)
138 > FIND_PACKAGE(PythonInterp)
139 > IF(PYTHON_EXECUTABLE)
140 >  SET(PYTHON ${PYTHON_EXECUTABLE})
141 > ELSE(PYTHON_EXECUTABLE)
142 >  MESSAGE(STATUS "Failed to find python")
143 > ENDIF(PYTHON_EXECUTABLE)
144  
145 + SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
146 +
147 +
148   configure_file (
149    "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
150    "${PROJECT_SOURCE_DIR}/src/config.h"
# Line 134 | Line 154 | include_directories (${PROJECT_SOURCE_DIR}/src)
154   #CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.in ${CMAKE_CURRENT_BINARY_DIR}/config.h)
155  
156  
137 –
157   #Add executables for build
158 < set (PROGRAMS openmd Dump2XYZ simpleBuilder StaticProps DynamicProps
159 < randomBuilder nanoparticleBuilder thermalizer atom2md Hydro)
160 < # Example of how to set core libraries
161 < #set(CORELIBS ${GLUT_LIBRARY} ${OPENGL_LIBRARY} m)
158 > set (PROGRAMS
159 > openmd
160 > openmd_MPI
161 > Dump2XYZ
162 > simpleBuilder
163 > StaticProps
164 > DynamicProps
165 > randomBuilder
166 > nanoparticleBuilder
167 > thermalizer
168 > atom2md
169 > Hydro)
170  
171 < #foreach(program ${PROGRAMS})
172 < #  add_executable(${program} ${program}.cpp)
173 < #  target_link_libraries(${program} ${CORELIBS})
174 < #endforeach(program)
175 <
176 < #add_subdirectory(src/lattice)
177 < #add_subdirectory(src/brains)
178 < #add_subdirectory(src/UseTheForce)
179 <
180 <
181 < #Add subirectories for build
171 > set(SOURCE
172 > src/antlr/ANTLRUtil.cpp
173 > src/antlr/ASTFactory.cpp
174 > src/antlr/ASTNULLType.cpp
175 > src/antlr/ASTRefCount.cpp
176 > src/antlr/BaseAST.cpp
177 > src/antlr/BitSet.cpp
178 > src/antlr/CharBuffer.cpp
179 > src/antlr/CharScanner.cpp
180 > src/antlr/CommonAST.cpp
181 > src/antlr/CommonASTWithHiddenTokens.cpp
182 > src/antlr/CommonHiddenStreamToken.cpp
183 > src/antlr/CommonToken.cpp
184 > src/antlr/InputBuffer.cpp
185 > src/antlr/LLkParser.cpp
186 > src/antlr/MismatchedCharException.cpp
187 > src/antlr/MismatchedTokenException.cpp
188 > src/antlr/NoViableAltException.cpp
189 > src/antlr/NoViableAltForCharException.cpp
190 > src/antlr/Parser.cpp
191 > src/antlr/RecognitionException.cpp
192 > src/antlr/String.cpp
193 > src/antlr/Token.cpp
194 > src/antlr/TokenBuffer.cpp
195 > src/antlr/TokenRefCount.cpp
196 > src/antlr/TokenStreamBasicFilter.cpp
197 > src/antlr/TokenStreamHiddenTokenFilter.cpp
198 > src/antlr/TokenStreamRewriteEngine.cpp
199 > src/antlr/TokenStreamSelector.cpp
200 > src/antlr/TreeParser.cpp
201 > src/brains/BlockSnapshotManager.cpp
202 > src/brains/DataStorage.cpp
203 > src/brains/MoleculeCreator.cpp
204 > src/brains/PairList.cpp
205 > src/brains/Register.cpp
206 > src/brains/SimSnapshotManager.cpp
207 > src/brains/Snapshot.cpp
208 > src/brains/Stats.cpp
209 > src/constraints/Rattle.cpp
210 > src/hydrodynamics/Ellipsoid.cpp
211 > src/hydrodynamics/HydroProp.cpp
212 > src/hydrodynamics/Sphere.cpp
213 > src/integrators/DLM.cpp
214 > src/integrators/Integrator.cpp
215 > src/integrators/IntegratorFactory.cpp
216 > src/integrators/LangevinDynamics.cpp
217 > src/integrators/LDForceManager.cpp
218 > src/integrators/NgammaT.cpp
219 > src/integrators/NPAT.cpp
220 > src/integrators/NPrT.cpp
221 > src/integrators/NPT.cpp
222 > src/integrators/NPTf.cpp
223 > src/integrators/NPTi.cpp
224 > src/integrators/NPTsz.cpp
225 > src/integrators/NPTxyz.cpp
226 > src/integrators/NVE.cpp
227 > src/integrators/NVT.cpp
228 > src/integrators/VelocityVerletIntegrator.cpp
229 > src/io/AtomTypesSectionParser.cpp
230 > src/io/BaseAtomTypesSectionParser.cpp
231 > src/io/BendTypesSectionParser.cpp
232 > src/io/BondTypesSectionParser.cpp
233 > src/io/ChargeAtomTypesSectionParser.cpp
234 > src/io/DirectionalAtomTypesSectionParser.cpp
235 > src/io/EAMAtomTypesSectionParser.cpp
236 > src/io/ForceFieldOptions.cpp
237 > src/io/GayBerneAtomTypesSectionParser.cpp
238 > src/io/Globals.cpp
239 > src/io/gzstream.cpp
240 > src/io/InversionTypesSectionParser.cpp
241 > src/io/LennardJonesAtomTypesSectionParser.cpp
242 > src/io/MultipoleAtomTypesSectionParser.cpp
243 > src/io/NonBondedInteractionsSectionParser.cpp
244 > src/io/OptionSectionParser.cpp
245 > src/io/ParamConstraint.cpp
246 > src/io/SCAtomTypesSectionParser.cpp
247 > src/io/SectionParser.cpp
248 > src/io/SectionParserManager.cpp
249 > src/io/ShapeAtomTypesSectionParser.cpp
250 > src/io/StickyAtomTypesSectionParser.cpp
251 > src/io/StickyPowerAtomTypesSectionParser.cpp
252 > src/io/TorsionTypesSectionParser.cpp
253 > src/io/ZConsReader.cpp
254 > src/lattice/CubicLattice.cpp
255 > src/lattice/FCCLattice.cpp
256 > src/lattice/Lattice.cpp
257 > src/lattice/LatticeFactory.cpp
258 > src/lattice/shapedLattice.cpp
259 > src/math/ChebyshevT.cpp
260 > src/math/ChebyshevU.cpp
261 > src/math/CubicSpline.cpp
262 > src/math/LegendrePolynomial.cpp
263 > src/math/RealSphericalHarmonic.cpp
264 > src/math/RMSD.cpp
265 > src/math/SeqRandNumGen.cpp
266 > src/math/SphericalHarmonic.cpp
267 > src/math/Wigner3jm.cpp
268 > src/mdParser/FilenameObserver.cpp
269 > src/mdParser/MDLexer.cpp
270 > src/mdParser/MDParser.cpp
271 > src/mdParser/MDTreeParser.cpp
272 > src/minimizers/MinimizerFactory.cpp
273 > src/minimizers/MinimizerParameterSet.cpp
274 > src/nonbonded/EAM.cpp
275 > src/nonbonded/Electrostatic.cpp
276 > src/nonbonded/GB.cpp
277 > src/nonbonded/InteractionManager.cpp
278 > src/nonbonded/LJ.cpp
279 > src/nonbonded/MAW.cpp
280 > src/nonbonded/Morse.cpp
281 > src/nonbonded/RepulsivePower.cpp
282 > src/nonbonded/SC.cpp
283 > src/nonbonded/Sticky.cpp
284 > src/nonbonded/SwitchingFunction.cpp
285 > src/primitives/Atom.cpp
286 > src/primitives/Bend.cpp
287 > src/primitives/DirectionalAtom.cpp
288 > src/primitives/GhostBend.cpp
289 > src/primitives/GhostTorsion.cpp
290 > src/primitives/Inversion.cpp
291 > src/primitives/Molecule.cpp
292 > src/primitives/RigidBody.cpp
293 > src/primitives/StuntDouble.cpp
294 > src/primitives/Torsion.cpp
295 > src/primitives/UreyBradleyBend.cpp
296 > src/restraints/MolecularRestraint.cpp
297 > src/restraints/ObjectRestraint.cpp
298 > src/selection/DistanceFinder.cpp
299 > src/selection/HullFinder.cpp
300 > src/selection/IndexFinder.cpp
301 > src/selection/NameFinder.cpp
302 > src/selection/SelectionCompiler.cpp
303 > src/selection/SelectionEvaluator.cpp
304 > src/selection/SelectionManager.cpp
305 > src/selection/SelectionToken.cpp
306 > src/selection/TokenMap.cpp
307 > src/types/AtomStamp.cpp
308 > src/types/AtomType.cpp
309 > src/types/BendStamp.cpp
310 > src/types/BondStamp.cpp
311 > src/types/CharmmTorsionType.cpp
312 > src/types/Component.cpp
313 > src/types/CutoffGroupStamp.cpp
314 > src/types/DirectionalAtomType.cpp
315 > src/types/FragmentStamp.cpp
316 > src/types/ImproperCosineInversionType.cpp
317 > src/types/InversionStamp.cpp
318 > src/types/MoleculeStamp.cpp
319 > src/types/NonBondedInteractionType.cpp
320 > src/types/RestraintStamp.cpp
321 > src/types/RigidBodyStamp.cpp
322 > src/types/ShapeAtomType.cpp
323 > src/types/TorsionStamp.cpp
324 > src/types/ZconsStamp.cpp
325 > src/UseTheForce/Amber_FF.cpp
326 > src/UseTheForce/CLAYFF.cpp
327 > src/UseTheForce/DUFF.cpp
328 > src/UseTheForce/EADM_FF.cpp
329 > src/UseTheForce/EAM_FF.cpp
330 > src/UseTheForce/ForceField.cpp
331 > src/UseTheForce/ForceFieldFactory.cpp
332 > src/UseTheForce/MnM_FF.cpp
333 > src/UseTheForce/SC_FF.cpp
334 > src/UseTheForce/SHAPES_FF.cpp
335 > src/utils/ElementsTable.cpp
336 > src/utils/MoLocator.cpp
337 > src/utils/OpenMDBitSet.cpp
338 > src/utils/PropertyMap.cpp
339 > src/utils/StringTokenizer.cpp
340 > src/utils/StringUtils.cpp
341 > src/utils/Trim.cpp
342 > src/utils/Utility.cpp
343 > src/utils/wildcards.cpp
344 > src/visitors/AtomNameVisitor.cpp
345 > src/visitors/AtomVisitor.cpp
346 > src/visitors/CompositeVisitor.cpp
347 > src/visitors/LipidTransVisitor.cpp
348 > src/visitors/OtherVisitor.cpp
349 > src/visitors/ReplacementVisitor.cpp
350 > src/visitors/RigidBodyVisitor.cpp
351 > src/visitors/ZconsVisitor.cpp
352 > )
353  
354 + set( PARALLEL_SOURCE
355 + src/brains/ForceManager.cpp
356 + src/brains/SimCreator.cpp
357 + src/brains/SimInfo.cpp
358 + src/brains/Thermo.cpp
359 + src/constraints/ZconstraintForceManager.cpp
360 + src/integrators/RNEMD.cpp
361 + src/integrators/Velocitizer.cpp
362 + src/io/DumpReader.cpp
363 + src/io/DumpWriter.cpp
364 + src/io/RestReader.cpp
365 + src/io/RestWriter.cpp
366 + src/io/StatWriter.cpp
367 + src/io/ZConsWriter.cpp
368 + src/io/ifstrstream.cpp
369 + src/math/ParallelRandNumGen.cpp
370 + src/minimizers/CGFamilyMinimizer.cpp
371 + src/minimizers/Minimizer.cpp
372 + src/minimizers/PRCG.cpp
373 + src/minimizers/SDMinimizer.cpp
374 + src/parallel/ForceDecomposition.cpp
375 + src/parallel/ForceMatrixDecomposition.cpp
376 + src/restraints/RestraintForceManager.cpp
377 + src/restraints/ThermoIntegrationForceManager.cpp
378 + src/utils/ProgressBar.cpp
379 + src/utils/simError.c
380 + )
381  
382 < #add_subdirectory(src)
383 < add_subdirectory(lib)
384 < add_subdirectory(bin)
382 > IF(QHULL_FOUND)
383 > set(QHULL_SOURCE
384 > src/integrators/LangevinHullDynamics.cpp
385 > src/math/Triangle.cpp
386 > )
387 > set(QHULL_PARALLEL_SOURCE
388 > src/integrators/LangevinHullForceManager.cpp
389 > src/math/ConvexHull.cpp
390 > src/math/AlphaHull.cpp
391 > )
392 > ENDIF(QHULL_FOUND)
393 >
394 > add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
395 > add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
396 >
397 > IF(MPI_FOUND)
398 > add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
399 > set_target_properties(openmd_parallel PROPERTIES
400 > COMPILE_DEFINITIONS IS_MPI
401 > )
402 > ENDIF(MPI_FOUND)
403 >
404 > add_executable(openmd src/applications/openmd/openmd.cpp)
405 > target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
406 >
407 > if (MPI_FOUND)
408 > add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
409 > set_target_properties(openmd_MPI PROPERTIES
410 > COMPILE_DEFINITIONS IS_MPI
411 > )
412 > target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
413 >  INSTALL(TARGETS
414 >        openmd_parallel openmd_MPI
415 >  RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
416 >  LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
417 >  ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
418 > )
419 > ENDIF (MPI_FOUND)
420 >
421 > set (DUMP2XYZSOURCE
422 > src/applications/dump2Xyz/Dump2XYZ.cpp
423 > src/applications/dump2Xyz/Dump2XYZCmd.c
424 > )
425 >
426 > set (DYNAMICPROPSSOURCE
427 > src/applications/dynamicProps/ActionCorrFunc.cpp
428 > src/applications/dynamicProps/CrossTimeCorrFunc.cpp
429 > src/applications/dynamicProps/DipoleCorrFunc.cpp
430 > src/applications/dynamicProps/DirectionalRCorrFunc.cpp
431 > src/applications/dynamicProps/DynamicProps.cpp
432 > src/applications/dynamicProps/EnergyCorrFunc.cpp
433 > src/applications/dynamicProps/FrameTimeCorrFunc.cpp
434 > src/applications/dynamicProps/LegendreCorrFunc.cpp
435 > src/applications/dynamicProps/MomentumCorrFunc.cpp
436 > src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
437 > src/applications/dynamicProps/RadialRCorrFunc.cpp
438 > src/applications/dynamicProps/RCorrFunc.cpp
439 > src/applications/dynamicProps/StressCorrFunc.cpp
440 > src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
441 > src/applications/dynamicProps/ThetaCorrFunc.cpp
442 > src/applications/dynamicProps/TimeCorrFunc.cpp
443 > src/applications/dynamicProps/VCorrFunc.cpp
444 > src/applications/dynamicProps/DynamicPropsCmd.c
445 > )
446 >
447 > set (HYDROSOURCE
448 > src/applications/hydrodynamics/AnalyticalModel.cpp
449 > src/applications/hydrodynamics/ApproximationModel.cpp
450 > src/applications/hydrodynamics/BeadModel.cpp
451 > src/applications/hydrodynamics/CompositeShape.cpp
452 > src/applications/hydrodynamics/Hydro.cpp
453 > src/applications/hydrodynamics/HydrodynamicsModel.cpp
454 > src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
455 > src/applications/hydrodynamics/RoughShell.cpp
456 > src/applications/hydrodynamics/ShapeBuilder.cpp
457 > src/applications/hydrodynamics/HydroCmd.c
458 > )
459 >
460 > set (STATICPROPSSOURCE
461 > src/applications/staticProps/AngleR.cpp
462 > src/applications/staticProps/BondAngleDistribution.cpp
463 > src/applications/staticProps/BondOrderParameter.cpp
464 > src/applications/staticProps/BOPofR.cpp
465 > src/applications/staticProps/DensityPlot.cpp
466 > src/applications/staticProps/GofAngle2.cpp
467 > src/applications/staticProps/GofR.cpp
468 > src/applications/staticProps/GofRAngle.cpp
469 > src/applications/staticProps/GofRZ.cpp
470 > src/applications/staticProps/GofXyz.cpp
471 > src/applications/staticProps/GofZ.cpp
472 > src/applications/staticProps/Hxy.cpp
473 > src/applications/staticProps/NanoLength.cpp
474 > src/applications/staticProps/NanoVolume.cpp
475 > src/applications/staticProps/ObjectCount.cpp
476 > src/applications/staticProps/P2OrderParameter.cpp
477 > src/applications/staticProps/pAngle.cpp
478 > src/applications/staticProps/RadialDistrFunc.cpp
479 > src/applications/staticProps/RhoR.cpp
480 > src/applications/staticProps/RhoZ.cpp
481 > src/applications/staticProps/RippleOP.cpp
482 > src/applications/staticProps/SCDOrderParameter.cpp
483 > src/applications/staticProps/StaticProps.cpp
484 > src/applications/staticProps/TetrahedralityParam.cpp
485 > src/applications/staticProps/TwoDGofR.cpp
486 > src/applications/staticProps/StaticPropsCmd.c
487 > )
488 >
489 > set (NANOPARTICLEBUILDERSOURCE
490 > src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
491 > src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
492 > src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.c
493 > )
494 >
495 > set (RANDOMBUILDERSOURCE
496 > src/applications/randomBuilder/randomBuilder.cpp
497 > src/applications/randomBuilder/randomBuilderCmd.c
498 > )
499 >
500 > set(SIMPLEBUILDERSOURCE
501 > src/applications/simpleBuilder/simpleBuilder.cpp
502 > src/applications/simpleBuilder/simpleBuilderCmd.c
503 > )
504 >
505 > set(THERMALIZERSOURCE
506 > src/applications/thermalizer/thermalizer.cpp
507 > src/applications/thermalizer/thermalizerCmd.c
508 > )
509 >
510 > add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
511 > target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
512 > add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
513 > target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
514 > add_executable(Hydro ${HYDROSOURCE})
515 > target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
516 > add_executable(StaticProps ${STATICPROPSSOURCE})
517 > target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
518 > add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
519 > target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
520 > add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
521 > target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
522 > add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
523 > target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
524 > add_executable(thermalizer ${THERMALIZERSOURCE})
525 > target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
526 >
527 > if (OPENBABEL2_FOUND)
528 > set (ATOM2MDSOURCE
529 > src/applications/atom2md/atom2md.cpp
530 > src/applications/atom2md/openmdformat.cpp
531 > )
532 >  add_executable(atom2md ${ATOM2MDSOURCE})
533 >  target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
534 >  INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
535 >          PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
536 > ENDIF (OPENBABEL2_FOUND)
537 >
538 >
539 > set(PY_FILES
540 > src/applications/hydrodynamics/diffExplainer
541 > src/applications/utilities/affineScale
542 > src/applications/utilities/dumpConverter
543 > src/applications/utilities/md-solvator
544 > src/applications/utilities/md2md
545 > src/applications/utilities/mdSplit
546 > src/applications/utilities/principalAxisCalculator
547 > src/applications/utilities/stat2visco
548 > src/applications/utilities/waterRotator
549 > )
550 >
551 > IF(PYTHON_EXECUTABLE)
552 >   foreach(PY_FILE ${PY_FILES})
553 >      GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
554 >      CONFIGURE_FILE(${PY_FILE}
555 >                     "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
556 >      INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
557 >              DESTINATION bin
558 >              PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
559 >   endforeach(PY_FILE)
560 > ENDIF(PYTHON_EXECUTABLE)
561 >
562 > set(PERL_FILES
563 > src/applications/utilities/solvator
564 > src/applications/utilities/waterBoxer
565 > )
566 >
567 > IF(PERL_FOUND)
568 >   foreach(PERL_FILE ${PERL_FILES})
569 >      GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
570 >      configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
571 >      INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
572 >              DESTINATION bin
573 >              PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
574 >
575 >   endforeach(PERL_FILE)
576 > ENDIF(PERL_FOUND)
577 >
578 > INSTALL(FILES AUTHORS LICENSE README DESTINATION .
579 >        PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
580 > INSTALL(TARGETS
581 >        openmd_core
582 >        openmd_single
583 >        openmd
584 >        Dump2XYZ
585 >        simpleBuilder
586 >        StaticProps
587 >        DynamicProps
588 >        randomBuilder
589 >        nanoparticleBuilder
590 >        thermalizer
591 >        Hydro
592 >  RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
593 >  LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
594 >  ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
595 > )
596 >
597 > install(DIRECTORY forceFields/  
598 >        DESTINATION forceFields
599 >        DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
600 >        PATTERN ".svn" EXCLUDE
601 >        PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
602 > install(DIRECTORY samples/      
603 >        DESTINATION samples
604 >        DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
605 >        PATTERN ".svn" EXCLUDE
606 >        PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)

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