Creating busticated version of OpenMD
Fixing the build and install method for samples in Madelung, RNEMD, zeolite, SMIPD
Install bugs, tweaks of samples
Added preliminary code for Alpha Hull calculation using qhull. Added preliminary support to SMIPD to support Alpha Hull. Alpha Hull does not yet add the correct things to triangle to be returned to SMPID. Preliminary changes for shadow hamiltonian integrator. Chages to md files so they will work in openMD.
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Relaxed structure at low T to be not so high up on the PE wall.
Adding samples for SMIPD.
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