# | Line 5 | Line 5 | using namespace std; | |
---|---|---|
5 | #include <iostream> | |
6 | using namespace std; | |
7 | ||
8 | < | #include "SimInfo.hpp" |
8 | > | #include "brains/SimInfo.hpp" |
9 | #define __C | |
10 | < | #include "fSimulation.h" |
11 | < | #include "simError.h" |
10 | > | #include "brains/fSimulation.h" |
11 | > | #include "utils/simError.h" |
12 | > | #include "UseTheForce/DarkSide/simulation_interface.h" |
13 | > | #include "UseTheForce/notifyCutoffs_interface.h" |
14 | ||
15 | < | #include "fortranWrappers.hpp" |
15 | > | //#include "UseTheForce/fortranWrappers.hpp" |
16 | ||
17 | < | #include "MatVec3.h" |
17 | > | #include "math/MatVec3.h" |
18 | ||
19 | #ifdef IS_MPI | |
20 | < | #include "mpiSimulation.hpp" |
20 | > | #include "brains/mpiSimulation.hpp" |
21 | #endif | |
22 | ||
23 | inline double roundMe( double x ){ | |
# | Line 76 | Line 78 | SimInfo::SimInfo(){ | |
78 | ||
79 | ngroup = 0; | |
80 | ||
79 | – | wrapMeSimInfo( this ); |
81 | } | |
82 | ||
83 | ||
# | Line 132 | Line 133 | void SimInfo::setBoxM( double theBox[3][3] ){ | |
133 | } | |
134 | } | |
135 | ||
136 | < | setFortranBoxSize(FortranHmat, FortranHmatInv, &orthoRhombic); |
136 | > | setFortranBox(FortranHmat, FortranHmatInv, &orthoRhombic); |
137 | ||
138 | } | |
139 | ||
# | Line 459 | Line 460 | void SimInfo::refreshSim(){ | |
460 | //it may not be a good idea to pass the address of first element in vector | |
461 | //since c++ standard does not require vector to be stored continuously in meomory | |
462 | //Most of the compilers will organize the memory of vector continuously | |
463 | < | setFsimulation( &fInfo, &n_global, &n_atoms, identArray, &n_exclude, excl, |
463 | > | setFortranSim( &fInfo, &n_global, &n_atoms, identArray, &n_exclude, excl, |
464 | &nGlobalExcludes, globalExcludes, molMembershipArray, | |
465 | &mfact[0], &ngroup, &FglobalGroupMembership[0], &isError); | |
466 | ||
# | Line 489 | Line 490 | void SimInfo::setDefaultRcut( double theRcut ){ | |
490 | rCut = theRcut; | |
491 | rList = rCut + 1.0; | |
492 | ||
493 | < | notifyFortranCutOffs( &rCut, &rSw, &rList ); |
493 | > | notifyFortranCutoffs( &rCut, &rSw, &rList ); |
494 | } | |
495 | ||
496 | void SimInfo::setDefaultRcut( double theRcut, double theRsw ){ |
– | Removed lines |
+ | Added lines |
< | Changed lines |
> | Changed lines |