| 35 | 
  | 
 *                                                                       | 
| 36 | 
  | 
 * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).              | 
| 37 | 
  | 
 * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).           | 
| 38 | 
< | 
 * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).           | 
| 38 | 
> | 
 * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).           | 
| 39 | 
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 * [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010). | 
| 40 | 
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 * [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). | 
| 41 | 
  | 
 */ | 
| 941 | 
  | 
      } | 
| 942 | 
  | 
    }     | 
| 943 | 
  | 
     | 
| 944 | 
– | 
    //scan topology  | 
| 945 | 
– | 
 | 
| 946 | 
– | 
    int* excludeList = excludedInteractions_.getPairList(); | 
| 947 | 
– | 
    int* oneTwoList = oneTwoInteractions_.getPairList(); | 
| 948 | 
– | 
    int* oneThreeList = oneThreeInteractions_.getPairList(); | 
| 949 | 
– | 
    int* oneFourList = oneFourInteractions_.getPairList(); | 
| 950 | 
– | 
 | 
| 944 | 
  | 
    topologyDone_ = true; | 
| 945 | 
  | 
  } | 
| 946 | 
  | 
 |