| 879 |  |  | 
| 880 |  |  | 
| 881 |  | void SimInfo::prepareTopology() { | 
| 882 | – | int nExclude, nOneTwo, nOneThree, nOneFour; | 
| 882 |  |  | 
| 883 |  | //calculate mass ratio of cutoff group | 
| 884 |  | SimInfo::MoleculeIterator mi; | 
| 926 |  | } | 
| 927 |  |  | 
| 928 |  | //scan topology | 
| 930 | – |  | 
| 931 | – | nExclude = excludedInteractions_.getSize(); | 
| 932 | – | nOneTwo = oneTwoInteractions_.getSize(); | 
| 933 | – | nOneThree = oneThreeInteractions_.getSize(); | 
| 934 | – | nOneFour = oneFourInteractions_.getSize(); | 
| 929 |  |  | 
| 930 |  | int* excludeList = excludedInteractions_.getPairList(); | 
| 931 |  | int* oneTwoList = oneTwoInteractions_.getPairList(); |