--- trunk/src/brains/SimInfo.cpp	2008/09/10 18:11:32	1287
+++ trunk/src/brains/SimInfo.cpp	2009/10/23 18:41:09	1386
@@ -446,7 +446,7 @@ namespace oopse {
       b = torsion->getAtomB()->getGlobalIndex();        
       c = torsion->getAtomC()->getGlobalIndex();        
       d = torsion->getAtomD()->getGlobalIndex();      
-  
+
       if (options_.havevdw12scale() || options_.haveelectrostatic12scale()) {
         oneTwoInteractions_.addPair(a, b);      
         oneTwoInteractions_.addPair(b, c);
@@ -763,6 +763,7 @@ namespace oopse {
     useRF = 0;
     useSF = 0;
     useSP = 0;
+    useBoxDipole = 0;
 
 
     if (simParams_->haveElectrostaticSummationMethod()) {
@@ -949,15 +950,6 @@ namespace oopse {
     nOneTwo = oneTwoInteractions_.getSize();
     nOneThree = oneThreeInteractions_.getSize();
     nOneFour = oneFourInteractions_.getSize();
-
-    std::cerr << "exculdes:\n";
-    std::cerr << excludedInteractions_;
-    std::cerr << "\noneTwo:\n";
-    std::cerr << oneTwoInteractions_;
-    std::cerr << "\noneThree:\n";
-    std::cerr << oneThreeInteractions_;
-    std::cerr << "\noneFour:\n";
-    std::cerr << oneFourInteractions_;
 
     int* excludeList = excludedInteractions_.getPairList();
     int* oneTwoList = oneTwoInteractions_.getPairList();
@@ -1061,8 +1053,8 @@ namespace oopse {
     int cp =  TRADITIONAL_CUTOFF_POLICY; // Set to traditional by default
 
     // Set LJ shifting bools to false
-    ljsp_ = false;
-    ljsf_ = false;
+    ljsp_ = 0;
+    ljsf_ = 0;
 
     std::string myPolicy;
     if (forceFieldOptions_.haveCutoffPolicy()){
@@ -1133,11 +1125,12 @@ namespace oopse {
 	toUpper(myMethod);
         
 	if (myMethod == "SHIFTED_POTENTIAL") {
-	  ljsp_ = true;
+	  ljsp_ = 1;
 	} else if (myMethod == "SHIFTED_FORCE") {
-	  ljsf_ = true;
+	  ljsf_ = 1;
 	}
       }
+
       notifyFortranCutoffs(&rcut_, &rsw_, &ljsp_, &ljsf_);
       
     } else {
@@ -1159,9 +1152,9 @@ namespace oopse {
       // For the time being, we're tethering the LJ shifted behavior to the
       // electrostaticSummationMethod keyword options
 	  if (myMethod == "SHIFTED_POTENTIAL") {
-	    ljsp_ = true;
+	    ljsp_ = 1;
 	  } else if (myMethod == "SHIFTED_FORCE") {
-	    ljsf_ = true;
+	    ljsf_ = 1;
 	  }
 	  if (myMethod == "SHIFTED_POTENTIAL" || myMethod == "SHIFTED_FORCE") {
             if (simParams_->haveSwitchingRadius()){