--- branches/development/src/brains/Thermo.cpp 2012/07/03 18:32:27 1764 +++ branches/development/src/brains/Thermo.cpp 2012/09/13 14:10:11 1798 @@ -54,8 +54,10 @@ #include "types/FixedChargeAdapter.hpp" #include "types/FluctuatingChargeAdapter.hpp" #include "types/MultipoleAdapter.hpp" +#ifdef HAVE_QHULL #include "math/ConvexHull.hpp" #include "math/AlphaHull.hpp" +#endif using namespace std; namespace OpenMD { @@ -370,12 +372,8 @@ namespace OpenMD { pCount++; } - MultipoleAdapter ma = MultipoleAdapter(atom->getAtomType()); - if (ma.isDipole() ) { - Vector3d u_i = atom->getElectroFrame().getColumn(2); - moment = ma.getDipoleMoment(); - moment *= debyeToCm; - dipoleVector += u_i * moment; + if (atom->isDipole()) { + dipoleVector += atom->getDipole() * debyeToCm; } } } @@ -830,9 +828,9 @@ namespace OpenMD { data[0] = pos1.x(); data[1] = pos1.y(); data[2] = pos1.z(); - MPI_Bcast(data, 3, MPI_REALTYPE, proc1, MPI_COMM_WORLD); + MPI::COMM_WORLD.Bcast(data, 3, MPI::REALTYPE, proc1); } else { - MPI_Bcast(data, 3, MPI_REALTYPE, proc1, MPI_COMM_WORLD); + MPI::COMM_WORLD.Bcast(data, 3, MPI::REALTYPE, proc1); pos1 = Vector3d(data); } @@ -841,10 +839,10 @@ namespace OpenMD { pos2 = sd2->getPos(); data[0] = pos2.x(); data[1] = pos2.y(); - data[2] = pos2.z(); - MPI_Bcast(data, 3, MPI_REALTYPE, proc2, MPI_COMM_WORLD); + data[2] = pos2.z(); + MPI::COMM_WORLD.Bcast(data, 3, MPI::REALTYPE, proc2); } else { - MPI_Bcast(data, 3, MPI_REALTYPE, proc2, MPI_COMM_WORLD); + MPI::COMM_WORLD.Bcast(data, 3, MPI::REALTYPE, proc2); pos2 = Vector3d(data); } #else @@ -864,9 +862,9 @@ namespace OpenMD { RealType Thermo::getHullVolume(){ Snapshot* snap = info_->getSnapshotManager()->getCurrentSnapshot(); - - if (!snap->hasHullVolume) { +#ifdef HAVE_QHULL + if (!snap->hasHullVolume) { Hull* surfaceMesh_; Globals* simParams = info_->getSimParams(); @@ -902,5 +900,8 @@ namespace OpenMD { snap->setHullVolume(surfaceMesh_->getVolume()); } return snap->getHullVolume(); - } +#else + return 0.0; +#endif + } }