| 36 | 
  | 
 * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).              | 
| 37 | 
  | 
 * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).           | 
| 38 | 
  | 
 * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).           | 
| 39 | 
< | 
 * [4]  Vardeman & Gezelter, in progress (2009).                         | 
| 39 | 
> | 
 * [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010). | 
| 40 | 
> | 
 * [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). | 
| 41 | 
  | 
 */ | 
| 42 | 
  | 
   | 
| 43 | 
  | 
/**  | 
| 80 | 
  | 
  | 
| 81 | 
  | 
  protected:  | 
| 82 | 
  | 
  | 
| 83 | 
< | 
    void scanFile();  | 
| 83 | 
< | 
  | 
| 83 | 
> | 
    void scanFile();   | 
| 84 | 
  | 
    void readSet(int whichFrame);  | 
| 85 | 
– | 
  | 
| 85 | 
  | 
    virtual void parseDumpLine(const std::string&);  | 
| 86 | 
< | 
  | 
| 86 | 
> | 
    virtual void parseSiteLine(const std::string&);   | 
| 87 | 
  | 
    virtual void readFrameProperties(std::istream& inputStream); | 
| 88 | 
< | 
 | 
| 89 | 
< | 
    void readStuntDoubles(std::istream& inputStream);                   | 
| 88 | 
> | 
    void readStuntDoubles(std::istream& inputStream); | 
| 89 | 
> | 
    void readSiteData(std::istream& inputStream); | 
| 90 | 
  | 
          | 
| 91 | 
  | 
    SimInfo* info_;  | 
| 92 | 
  | 
  |