# | Line 52 | Line 52 | |
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52 | ||
53 | #include "io/ParamConstraint.hpp" | |
54 | ||
55 | – | #define DefineParameter(NAME,KEYWORD) \ |
56 | – | NAME.setKeyword(KEYWORD); \ |
57 | – | parameters_.insert(std::make_pair(std::string(KEYWORD), &NAME)); |
55 | ||
59 | – | #define DefineOptionalParameter(NAME,KEYWORD) \ |
60 | – | NAME.setKeyword(KEYWORD); NAME.setOptional(true); \ |
61 | – | parameters_.insert(std::make_pair(std::string(KEYWORD), &NAME)); |
62 | – | |
63 | – | #define DefineOptionalParameterWithDefaultValue(NAME,KEYWORD, DEFAULTVALUE) \ |
64 | – | NAME.setKeyword(KEYWORD); NAME.setOptional(true); NAME.setDefaultValue(DEFAULTVALUE); \ |
65 | – | parameters_.insert(std::make_pair(std::string(KEYWORD), &NAME)); |
66 | – | |
67 | – | #define CheckParameter(NAME, CONSTRAINT) \ |
68 | – | if (!NAME.empty()) { if (!(CONSTRAINT)(NAME.getData())) std::cout <<"Error in parsing " << NAME.getKeyword() << " : "<< (CONSTRAINT).getConstraintDescription() << std::endl; } |
69 | – | |
70 | – | |
56 | Globals::Globals(){ | |
57 | ||
58 | DefineParameter(ForceField, "forceField") | |
# | Line 122 | Line 107 | Globals::Globals(){ | |
107 | DefineOptionalParameter(SurfaceTension, "surfaceTension"); | |
108 | DefineOptionalParameter(PrintPressureTensor, "printPressureTensor"); | |
109 | DefineOptionalParameter(ElectrostaticSummationMethod, "electrostaticSummationMethod"); | |
110 | + | DefineOptionalParameter(ElectrostaticScreeningMethod, "electrostaticScreeningMethod"); |
111 | DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); | |
112 | < | DefineOptionalParameter(StatFileFormat, "statFileFormat"); |
127 | < | |
112 | > | DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); |
113 | DefineOptionalParameterWithDefaultValue(MixingRule, "mixingRule", "standard"); | |
114 | DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); | |
115 | DefineOptionalParameterWithDefaultValue(UseInitalTime, "useInitialTime", false); | |
# | Line 135 | Line 120 | Globals::Globals(){ | |
120 | DefineOptionalParameterWithDefaultValue(ThermIntDistSpringConst, "thermIntDistSpringConst", 6.0); | |
121 | DefineOptionalParameterWithDefaultValue(ThermIntThetaSpringConst, "thermIntThetaSpringConst", 7.5); | |
122 | DefineOptionalParameterWithDefaultValue(ThermIntOmegaSpringConst, "thermIntOmegaSpringConst", 13.5); | |
123 | < | DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 1.5); |
123 | > | DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 0.2); |
124 | DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); | |
125 | + | DefineOptionalParameterWithDefaultValue(OutputForceVector, "outputForceVector", 0); |
126 | DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); | |
127 | + | DefineOptionalParameterWithDefaultValue(StatFileFormat, "statFileFormat", "TIME|TOTAL_ENERGY|POTENTIAL_ENERGY|KINETIC_ENERGY|TEMPERATURE|PRESSURE|VOLUME|CONSERVED_QUANTITY"); |
128 | + | |
129 | ||
130 | } | |
131 | ||
132 | int Globals::globalAssign( event* the_event ){ | |
133 | < | |
133 | > | char errorMessage[65535]; |
134 | int key; | |
147 | – | int token; |
135 | interface_assign_type the_type = the_event->evt.asmt.asmt_type; | |
136 | char* lhs = the_event->evt.asmt.lhs; | |
137 | std::string keyword(lhs); | |
138 | ||
139 | < | bool result; |
139 | > | bool result = false; |
140 | ||
141 | < | |
141 | > | /**@todo fix memory leak */ |
142 | ParamMap::iterator i =parameters_.find(keyword); | |
143 | if (i != parameters_.end()) { | |
144 | if( the_type == STRING ){ | |
145 | result = i->second->setData(std::string(the_event->evt.asmt.rhs.sval)); | |
146 | if (!result ) { | |
147 | < | sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be a string.\n", keyword.c_str() ); |
147 | > | sprintf(errorMessage, "Error in parsing %s: expect %s, but get a string \"%s\".\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.sval); |
148 | > | the_event->err_msg = strdup(errorMessage); |
149 | } | |
150 | } else if( the_type == DOUBLE ){ | |
151 | result = i->second->setData(the_event->evt.asmt.rhs.dval); | |
152 | if (!result ) | |
153 | < | sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be a double.\n", keyword.c_str() ); |
153 | > | sprintf(errorMessage, "Error in parsing %s: expect %s, but get a double %f.\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.dval ); |
154 | > | the_event->err_msg = strdup(errorMessage); |
155 | } | |
156 | else if (the_type == INT ){ | |
157 | result = i->second->setData(the_event->evt.asmt.rhs.ival); | |
158 | if (!result ) | |
159 | < | sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be an int.\n", keyword.c_str() ); |
159 | > | sprintf(errorMessage, "Error in parsing %s: expect %s, but get an int %d.\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.ival ); |
160 | > | the_event->err_msg = strdup(errorMessage); |
161 | ||
162 | } else { | |
163 | < | |
163 | > | sprintf(errorMessage, "Internal error of parser\n"); |
164 | > | the_event->err_msg = strdup(errorMessage); |
165 | } | |
166 | + | } else { |
167 | + | sprintf(errorMessage, "%s is an unrecognized keyword\n", keyword.c_str() ); |
168 | + | the_event->err_msg = strdup(errorMessage); |
169 | } | |
170 | ||
171 | if (keyword == "nComponents" && getNComponents() > 0) { | |
# | Line 333 | Line 327 | char* Globals::checkMe( void ){ | |
327 | CheckParameter(ForceField, isNotEmpty()); | |
328 | CheckParameter(NComponents,isPositive()); | |
329 | CheckParameter(TargetTemp, isPositive()); | |
330 | < | CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || isEqualIgnoreCase(std::string("NVT")) || |
331 | < | isEqualIgnoreCase(std::string("NPTi")) || isEqualIgnoreCase(std::string("NPTf"))|| |
332 | < | isEqualIgnoreCase(std::string("NPTxyz")) ); |
333 | < | |
330 | > | CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || |
331 | > | isEqualIgnoreCase(std::string("NVT")) || |
332 | > | isEqualIgnoreCase(std::string("NPTi")) || |
333 | > | isEqualIgnoreCase(std::string("NPTf")) || |
334 | > | isEqualIgnoreCase(std::string("NPTxyz")) ); |
335 | CheckParameter(Dt, isPositive()); | |
336 | CheckParameter(RunTime, isPositive()); | |
337 | CheckParameter(InitialConfig, isNotEmpty()); | |
# | Line 362 | Line 357 | char* Globals::checkMe( void ){ | |
357 | CheckParameter(ZconsTol, isPositive()); | |
358 | //CheckParameter(ZconsForcePolicy,); | |
359 | CheckParameter(Seed, isPositive()); | |
360 | < | CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || isEqualIgnoreCase(std::string("CG"))); |
360 | > | CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || |
361 | > | isEqualIgnoreCase(std::string("CG"))); |
362 | CheckParameter(MinimizerMaxIter, isPositive()); | |
363 | CheckParameter(MinimizerWriteFrq, isPositive()); | |
364 | CheckParameter(MinimizerStepSize, isPositive()); | |
# | Line 380 | Line 376 | char* Globals::checkMe( void ){ | |
376 | CheckParameter(ThermIntThetaSpringConst, isPositive()); | |
377 | CheckParameter(ThermIntOmegaSpringConst, isPositive()); | |
378 | CheckParameter(SurfaceTension, isPositive()); | |
379 | < | CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase(std::string("NONE")) || isEqualIgnoreCase(std::string("UNDAMPED_WOLF")) || isEqualIgnoreCase(std::string("DAMPED_WOLF")) || isEqualIgnoreCase(std::string("REACTION_FIELD")) ); |
380 | < | CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || isEqualIgnoreCase(std::string("MAX")) || isEqualIgnoreCase(std::string("TRADITIONAL"))); |
379 | > | CheckParameter(ElectrostaticSummationMethod, |
380 | > | isEqualIgnoreCase(std::string("NONE")) || |
381 | > | isEqualIgnoreCase(std::string("SHIFTED_POTENTIAL")) || |
382 | > | isEqualIgnoreCase(std::string("SHIFTED_FORCE")) || |
383 | > | isEqualIgnoreCase(std::string("REACTION_FIELD"))); |
384 | > | CheckParameter(ElectrostaticScreeningMethod, |
385 | > | isEqualIgnoreCase(std::string("UNDAMPED")) || |
386 | > | isEqualIgnoreCase(std::string("DAMPED"))); |
387 | > | CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || |
388 | > | isEqualIgnoreCase(std::string("MAX")) || |
389 | > | isEqualIgnoreCase(std::string("TRADITIONAL"))); |
390 | > | CheckParameter(SwitchingFunctionType, |
391 | > | isEqualIgnoreCase(std::string("CUBIC")) || |
392 | > | isEqualIgnoreCase(std::string("FIFTH_ORDER_POLYNOMIAL"))); |
393 | //CheckParameter(StatFileFormat,); | |
394 | //CheckParameter(MixingRule,); | |
395 | CheckParameter(OrthoBoxTolerance, isPositive()); | |
396 | CheckParameter(ThermIntDistSpringConst, isPositive()); | |
397 | CheckParameter(ThermIntThetaSpringConst, isPositive()); | |
398 | CheckParameter(ThermIntOmegaSpringConst, isPositive()); | |
399 | < | CheckParameter(DampingAlpha,isPositive()); |
399 | > | CheckParameter(DampingAlpha,isNonNegative()); |
400 | CheckParameter(SkinThickness, isPositive()); | |
401 | ||
402 | //@todo memory leak |
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+ | Added lines |
< | Changed lines |
> | Changed lines |