# | Line 117 | Line 117 | |
---|---|---|
117 | #define G_THERM_INT_THETA_SPRING 55 | |
118 | #define G_THERM_INT_OMEGA_SPRING 56 | |
119 | #define G_SURFACETENSION 57 | |
120 | < | #define G_PRINTPREESURETENSOR 58 |
121 | < | #define G_USE_UNDAMPED_WOLF 59 |
122 | < | #define G_USE_DAMPED_WOLF 60 |
120 | > | #define G_PRINTPRESSURETENSOR 58 |
121 | > | #define G_COULOMBIC_CORRECTION 59 |
122 | > | #define G_DAMPING_ALPHA 60 |
123 | > | #define G_CUTOFFPOLICY 61 |
124 | ||
125 | Globals::Globals(){ | |
126 | initalize(); | |
# | Line 195 | Line 196 | void Globals::initalize(){ | |
196 | command_table.insert(CommandMapType::value_type("thermIntThetaSpringConst", G_THERM_INT_THETA_SPRING)); | |
197 | command_table.insert(CommandMapType::value_type("thermIntOmegaSpringConst", G_THERM_INT_OMEGA_SPRING)); | |
198 | command_table.insert(CommandMapType::value_type("surfaceTension", G_SURFACETENSION)); | |
199 | < | command_table.insert(CommandMapType::value_type("printPressureTensor", G_PRINTPREESURETENSOR)); |
200 | < | command_table.insert(CommandMapType::value_type("useUndampedWolf", G_USE_UNDAMPED_WOLF)); |
201 | < | command_table.insert(CommandMapType::value_type("useDampedWolf", G_USE_DAMPED_WOLF)); |
199 | > | command_table.insert(CommandMapType::value_type("printPressureTensor", G_PRINTPRESSURETENSOR)); |
200 | > | command_table.insert(CommandMapType::value_type("coulombicCorrection", G_COULOMBIC_CORRECTION)); |
201 | > | command_table.insert(CommandMapType::value_type("dampingAlpha", G_DAMPING_ALPHA)); |
202 | > | command_table.insert(CommandMapType::value_type("cutoffPolicy", G_CUTOFFPOLICY)); |
203 | ||
204 | strcpy( mixingRule,"standard"); //default mixing rules to standard. | |
205 | usePBC = 1; //default periodic boundry conditions to on | |
# | Line 207 | Line 209 | void Globals::initalize(){ | |
209 | orthoBoxTolerance = 1E-6; | |
210 | useSolidThermInt = 0; // default solid-state thermodynamic integration to off | |
211 | useLiquidThermInt = 0; // default liquid thermodynamic integration to off | |
212 | + | dampingAlpha = 1.5; // default damping parameter in Wolf Electrostatics |
213 | ||
214 | have_force_field = 0; | |
215 | have_n_components = 0; | |
# | Line 261 | Line 264 | void Globals::initalize(){ | |
264 | have_omega_spring_constant = 0; | |
265 | have_surface_tension = 0; | |
266 | have_print_pressure_tensor = 0; | |
267 | + | have_coulombic_correction = 0; |
268 | + | have_damping_alpha = 0; |
269 | + | have_cutoff_policy = 0; |
270 | } | |
271 | ||
272 | int Globals::newComponent( event* the_event ){ | |
# | Line 1877 | Line 1883 | int Globals::globalAssign( event* the_event ){ | |
1883 | } | |
1884 | break; | |
1885 | ||
1886 | < | case G_PRINTPREESURETENSOR: |
1887 | < | if( the_type == STRING ){ |
1886 | > | case G_PRINTPRESSURETENSOR: |
1887 | > | if( the_type == STRING ){ |
1888 | ||
1889 | if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) { | |
1890 | have_print_pressure_tensor= 1; | |
# | Line 1899 | Line 1905 | int Globals::globalAssign( event* the_event ){ | |
1905 | return 0; | |
1906 | break; | |
1907 | ||
1908 | < | case G_USE_UNDAMPED_WOLF: |
1909 | < | if( the_type == STRING ){ |
1910 | < | |
1911 | < | if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) useUndampedWolf = 1; |
1912 | < | else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) useUndampedWolf = 0; |
1913 | < | else{ |
1914 | < | the_event->err_msg = |
1915 | < | strdup( "Error in parsing meta-data file!\n\tuseUndampedWolf was not \"true\" or \"false\".\n" ); |
1916 | < | return 0; |
1917 | < | } |
1918 | < | return 1; |
1908 | > | case G_COULOMBIC_CORRECTION: |
1909 | > | switch( the_type ){ |
1910 | > | |
1911 | > | case STRING: |
1912 | > | strcpy(coulombicCorrection, the_event->evt.asmt.rhs.sval); |
1913 | > | |
1914 | > | for(int i = 0; coulombicCorrection[i] != '\0'; i++) |
1915 | > | { |
1916 | > | coulombicCorrection[i] = toupper(coulombicCorrection[i]); |
1917 | > | } |
1918 | > | have_coulombic_correction = 1; |
1919 | > | return 1; |
1920 | > | break; |
1921 | > | |
1922 | > | case DOUBLE: |
1923 | > | the_event->err_msg = |
1924 | > | strdup( "Error in parsing meta-data file!\n\tcoulombicCorrection should be a string!\n" ); |
1925 | > | return 0; |
1926 | > | break; |
1927 | > | |
1928 | > | case INT: |
1929 | > | the_event->err_msg = |
1930 | > | strdup( "Error in parsing meta-data file!\n\tcoulombicCorrection should be a string!\n" ); |
1931 | > | return 0; |
1932 | > | break; |
1933 | > | |
1934 | > | default: |
1935 | > | the_event->err_msg = |
1936 | > | strdup( "Error in parsing meta-data file!\n\tcoulombicCorrection unrecognized.\n" ); |
1937 | > | return 0; |
1938 | > | break; |
1939 | } | |
1914 | – | |
1915 | – | the_event->err_msg = |
1916 | – | strdup( "Error in parsing meta-data file!\n\tuseUndampedWolf was not \"true\" or \"false\".\n" ); |
1917 | – | return 0; |
1940 | break; | |
1941 | < | |
1942 | < | case G_USE_DAMPED_WOLF: |
1943 | < | if( the_type == STRING ){ |
1941 | > | |
1942 | > | case G_DAMPING_ALPHA: |
1943 | > | switch( the_type ){ |
1944 | > | |
1945 | > | case STRING: |
1946 | > | the_event->err_msg = |
1947 | > | strdup( "Error in parsing meta-data file!\n\tdampingAlpha is not a double or int.\n" ); |
1948 | > | return 1; |
1949 | > | break; |
1950 | ||
1951 | < | if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) useDampedWolf = 1; |
1952 | < | else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) useDampedWolf = 0; |
1953 | < | else{ |
1926 | < | the_event->err_msg = |
1927 | < | strdup( "Error in parsing meta-data file!\n\tuseDampedWolf was not \"true\" or \"false\".\n" ); |
1928 | < | return 0; |
1929 | < | } |
1951 | > | case DOUBLE: |
1952 | > | dampingAlpha = the_event->evt.asmt.rhs.dval; |
1953 | > | have_damping_alpha = 1; |
1954 | return 1; | |
1955 | + | break; |
1956 | + | |
1957 | + | case INT: |
1958 | + | dampingAlpha = (double)the_event->evt.asmt.rhs.dval; |
1959 | + | have_damping_alpha = 1; |
1960 | + | return 1; |
1961 | + | break; |
1962 | + | |
1963 | + | default: |
1964 | + | the_event->err_msg = |
1965 | + | strdup( "Error in parsing meta-data file!\n\tdampingAlpha unrecognized.\n" ); |
1966 | + | return 0; |
1967 | + | break; |
1968 | } | |
1969 | < | |
1970 | < | the_event->err_msg = |
1971 | < | strdup( "Error in parsing meta-data file!\n\tuseDampedWolf was not \"true\" or \"false\".\n" ); |
1972 | < | return 0; |
1969 | > | break; |
1970 | > | |
1971 | > | case G_CUTOFFPOLICY: |
1972 | > | switch( the_type ){ |
1973 | > | |
1974 | > | case STRING: |
1975 | > | strcpy(cutoffPolicy, the_event->evt.asmt.rhs.sval); |
1976 | > | |
1977 | > | for(int i = 0; cutoffPolicy[i] != '\0'; i++) |
1978 | > | { |
1979 | > | cutoffPolicy[i] = toupper(cutoffPolicy[i]); |
1980 | > | } |
1981 | > | have_cutoff_policy = 1; |
1982 | > | return 1; |
1983 | > | break; |
1984 | > | |
1985 | > | case DOUBLE: |
1986 | > | the_event->err_msg = |
1987 | > | strdup( "Error in parsing meta-data file!\n\tcutoffPolicy should be a string!\n" ); |
1988 | > | return 0; |
1989 | > | break; |
1990 | > | |
1991 | > | case INT: |
1992 | > | the_event->err_msg = |
1993 | > | strdup( "Error in parsing meta-data file!\n\tcutoffPolicy should be a string!\n" ); |
1994 | > | return 0; |
1995 | > | break; |
1996 | > | |
1997 | > | default: |
1998 | > | the_event->err_msg = |
1999 | > | strdup( "Error in parsing meta-data file!\n\tcutoffPolicy unrecognized.\n" ); |
2000 | > | return 0; |
2001 | > | break; |
2002 | > | } |
2003 | break; | |
2004 | + | |
2005 | ||
1938 | – | |
2006 | // add more token cases here. | |
2007 | } | |
2008 | } |
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