| 57 | 
  | 
  DefineOptionalParameter(Ensemble, "ensemble"); | 
| 58 | 
  | 
  DefineOptionalParameter(Dt, "dt"); | 
| 59 | 
  | 
  DefineOptionalParameter(RunTime, "runTime"); | 
| 60 | 
< | 
  DefineOptionalParameter(InitialConfig, "initialConfig"); | 
| 60 | 
> | 
  //DefineOptionalParameter(InitialConfig, "initialConfig"); | 
| 61 | 
  | 
  DefineOptionalParameter(FinalConfig, "finalConfig"); | 
| 62 | 
  | 
  DefineOptionalParameter(SampleTime, "sampleTime"); | 
| 63 | 
  | 
  DefineOptionalParameter(ResetTime, "resetTime"); | 
| 113 | 
  | 
  DefineOptionalParameterWithDefaultValue(ThermIntDistSpringConst, "thermIntDistSpringConst", 6.0); | 
| 114 | 
  | 
  DefineOptionalParameterWithDefaultValue(ThermIntThetaSpringConst, "thermIntThetaSpringConst", 7.5); | 
| 115 | 
  | 
  DefineOptionalParameterWithDefaultValue(ThermIntOmegaSpringConst, "thermIntOmegaSpringConst", 13.5); | 
| 116 | 
< | 
  DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 0.2); | 
| 116 | 
> | 
  DefineOptionalParameter(DampingAlpha, "dampingAlpha"); | 
| 117 | 
  | 
  DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); | 
| 118 | 
  | 
  DefineOptionalParameterWithDefaultValue(OutputForceVector, "outputForceVector", 0); | 
| 119 | 
  | 
  DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); | 
| 124 | 
  | 
 | 
| 125 | 
  | 
    deprecatedKeywords_.insert("nComponents"); | 
| 126 | 
  | 
    deprecatedKeywords_.insert("nZconstraints"); | 
| 127 | 
+ | 
    deprecatedKeywords_.insert("initialConfig"); | 
| 128 | 
  | 
     | 
| 129 | 
  | 
} | 
| 130 | 
  | 
 | 
| 138 | 
  | 
 | 
| 139 | 
  | 
  CheckParameter(ForceField, isNotEmpty()); | 
| 140 | 
  | 
  CheckParameter(TargetTemp, isPositive()); | 
| 141 | 
< | 
  CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT")  || isEqualIgnoreCase("LANGEVINDYNAMICS") || isEqualIgnoreCase("LD") || isEqualIgnoreCase("NPRT") || isEqualIgnoreCase("NPGT")); | 
| 141 | 
> | 
  CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT")  || isEqualIgnoreCase("LANGEVINDYNAMICS") || isEqualIgnoreCase("LD") || isEqualIgnoreCase("NPRT") || isEqualIgnoreCase("NPGT") || isEqualIgnoreCase("NGammaT") || isEqualIgnoreCase("NGT")); | 
| 142 | 
  | 
  CheckParameter(Dt, isPositive()); | 
| 143 | 
  | 
  CheckParameter(RunTime, isPositive()); | 
| 144 | 
< | 
  CheckParameter(InitialConfig, isNotEmpty()); | 
| 144 | 
> | 
  //CheckParameter(InitialConfig, isNotEmpty()); | 
| 145 | 
  | 
  CheckParameter(FinalConfig, isNotEmpty()); | 
| 146 | 
  | 
  CheckParameter(SampleTime, isNonNegative()); | 
| 147 | 
  | 
  CheckParameter(ResetTime, isNonNegative()); |