| 121 | 
  | 
  DefineOptionalParameter(SurfaceTension, "surfaceTension"); | 
| 122 | 
  | 
  DefineOptionalParameter(PrintPressureTensor, "printPressureTensor"); | 
| 123 | 
  | 
  DefineOptionalParameter(ElectrostaticSummationMethod, "electrostaticSummationMethod"); | 
| 124 | 
+ | 
  DefineOptionalParameter(ElectrostaticScreeningMethod, "electrostaticScreeningMethod"); | 
| 125 | 
  | 
  DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); | 
| 126 | 
< | 
   | 
| 126 | 
> | 
  DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); | 
| 127 | 
  | 
  DefineOptionalParameterWithDefaultValue(MixingRule, "mixingRule", "standard"); | 
| 128 | 
  | 
  DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); | 
| 129 | 
  | 
  DefineOptionalParameterWithDefaultValue(UseInitalTime, "useInitialTime", false); | 
| 134 | 
  | 
  DefineOptionalParameterWithDefaultValue(ThermIntDistSpringConst, "thermIntDistSpringConst", 6.0); | 
| 135 | 
  | 
  DefineOptionalParameterWithDefaultValue(ThermIntThetaSpringConst, "thermIntThetaSpringConst", 7.5); | 
| 136 | 
  | 
  DefineOptionalParameterWithDefaultValue(ThermIntOmegaSpringConst, "thermIntOmegaSpringConst", 13.5); | 
| 137 | 
< | 
  DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 1.5); | 
| 137 | 
> | 
  DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 0.2); | 
| 138 | 
  | 
  DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); | 
| 139 | 
+ | 
  DefineOptionalParameterWithDefaultValue(OutputForceVector, "outputForceVector", 0); | 
| 140 | 
  | 
  DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); | 
| 141 | 
  | 
  DefineOptionalParameterWithDefaultValue(StatFileFormat, "statFileFormat", "TIME|TOTAL_ENERGY|POTENTIAL_ENERGY|KINETIC_ENERGY|TEMPERATURE|PRESSURE|VOLUME|CONSERVED_QUANTITY");     | 
| 142 | 
  | 
 | 
| 341 | 
  | 
  CheckParameter(ForceField, isNotEmpty()); | 
| 342 | 
  | 
  CheckParameter(NComponents,isPositive());  | 
| 343 | 
  | 
  CheckParameter(TargetTemp, isPositive()); | 
| 344 | 
< | 
  CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || isEqualIgnoreCase(std::string("NVT")) || | 
| 345 | 
< | 
                                          isEqualIgnoreCase(std::string("NPTi")) || isEqualIgnoreCase(std::string("NPTf"))||  | 
| 346 | 
< | 
                                          isEqualIgnoreCase(std::string("NPTxyz")) ); | 
| 347 | 
< | 
 | 
| 344 | 
> | 
  CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) ||  | 
| 345 | 
> | 
                 isEqualIgnoreCase(std::string("NVT")) || | 
| 346 | 
> | 
                 isEqualIgnoreCase(std::string("NPTi")) ||  | 
| 347 | 
> | 
                 isEqualIgnoreCase(std::string("NPTf")) ||  | 
| 348 | 
> | 
                 isEqualIgnoreCase(std::string("NPTxyz")) ); | 
| 349 | 
  | 
  CheckParameter(Dt, isPositive()); | 
| 350 | 
  | 
  CheckParameter(RunTime, isPositive()); | 
| 351 | 
  | 
  CheckParameter(InitialConfig, isNotEmpty()); | 
| 371 | 
  | 
  CheckParameter(ZconsTol, isPositive()); | 
| 372 | 
  | 
  //CheckParameter(ZconsForcePolicy,); | 
| 373 | 
  | 
  CheckParameter(Seed, isPositive()); | 
| 374 | 
< | 
  CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || isEqualIgnoreCase(std::string("CG"))); | 
| 374 | 
> | 
  CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) ||  | 
| 375 | 
> | 
                 isEqualIgnoreCase(std::string("CG"))); | 
| 376 | 
  | 
  CheckParameter(MinimizerMaxIter, isPositive()); | 
| 377 | 
  | 
  CheckParameter(MinimizerWriteFrq, isPositive()); | 
| 378 | 
  | 
  CheckParameter(MinimizerStepSize, isPositive()); | 
| 390 | 
  | 
  CheckParameter(ThermIntThetaSpringConst, isPositive()); | 
| 391 | 
  | 
  CheckParameter(ThermIntOmegaSpringConst, isPositive()); | 
| 392 | 
  | 
  CheckParameter(SurfaceTension, isPositive()); | 
| 393 | 
< | 
  CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase(std::string("NONE")) || isEqualIgnoreCase(std::string("UNDAMPED_WOLF")) || isEqualIgnoreCase(std::string("DAMPED_WOLF")) || isEqualIgnoreCase(std::string("REACTION_FIELD")) ); | 
| 394 | 
< | 
  CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || isEqualIgnoreCase(std::string("MAX")) || isEqualIgnoreCase(std::string("TRADITIONAL"))); | 
| 393 | 
> | 
  CheckParameter(ElectrostaticSummationMethod,  | 
| 394 | 
> | 
                 isEqualIgnoreCase(std::string("NONE")) ||  | 
| 395 | 
> | 
                 isEqualIgnoreCase(std::string("SHIFTED_POTENTIAL")) ||  | 
| 396 | 
> | 
                 isEqualIgnoreCase(std::string("SHIFTED_FORCE")) ||  | 
| 397 | 
> | 
                 isEqualIgnoreCase(std::string("REACTION_FIELD"))); | 
| 398 | 
> | 
  CheckParameter(ElectrostaticScreeningMethod,  | 
| 399 | 
> | 
                 isEqualIgnoreCase(std::string("UNDAMPED")) ||  | 
| 400 | 
> | 
                 isEqualIgnoreCase(std::string("DAMPED")));  | 
| 401 | 
> | 
  CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) ||  | 
| 402 | 
> | 
                 isEqualIgnoreCase(std::string("MAX")) ||  | 
| 403 | 
> | 
                 isEqualIgnoreCase(std::string("TRADITIONAL"))); | 
| 404 | 
> | 
  CheckParameter(SwitchingFunctionType,  | 
| 405 | 
> | 
                 isEqualIgnoreCase(std::string("CUBIC")) ||  | 
| 406 | 
> | 
                 isEqualIgnoreCase(std::string("FIFTH_ORDER_POLYNOMIAL"))); | 
| 407 | 
  | 
  //CheckParameter(StatFileFormat,);      | 
| 408 | 
  | 
  //CheckParameter(MixingRule,); | 
| 409 | 
  | 
  CheckParameter(OrthoBoxTolerance, isPositive());   | 
| 410 | 
  | 
  CheckParameter(ThermIntDistSpringConst, isPositive()); | 
| 411 | 
  | 
  CheckParameter(ThermIntThetaSpringConst, isPositive()); | 
| 412 | 
  | 
  CheckParameter(ThermIntOmegaSpringConst, isPositive()); | 
| 413 | 
< | 
  CheckParameter(DampingAlpha,isPositive()); | 
| 413 | 
> | 
  CheckParameter(DampingAlpha,isNonNegative()); | 
| 414 | 
  | 
  CheckParameter(SkinThickness, isPositive()); | 
| 415 | 
  | 
   | 
| 416 | 
  | 
  //@todo memory leak |