| 98 | 
  | 
  DefineOptionalParameter(ElectrostaticScreeningMethod, "electrostaticScreeningMethod"); | 
| 99 | 
  | 
  DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); | 
| 100 | 
  | 
  DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); | 
| 101 | 
< | 
  DefineOptionalParameterWithDefaultValue(MixingRule, "mixingRule", "standard"); | 
| 101 | 
> | 
  DefineOptionalParameter(HydroPropFile, "HydroPropFile"); | 
| 102 | 
> | 
  DefineOptionalParameter(Viscosity, "viscosity"); | 
| 103 | 
> | 
  DefineOptionalParameter(BeadSize, "beadSize"); | 
| 104 | 
> | 
   | 
| 105 | 
  | 
  DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); | 
| 106 | 
  | 
  DefineOptionalParameterWithDefaultValue(UseInitalTime, "useInitialTime", false); | 
| 107 | 
  | 
  DefineOptionalParameterWithDefaultValue(UseIntialExtendedSystemState, "useInitialExtendedSystemState", false); | 
| 133 | 
  | 
 | 
| 134 | 
  | 
  CheckParameter(ForceField, isNotEmpty()); | 
| 135 | 
  | 
  CheckParameter(TargetTemp, isPositive()); | 
| 136 | 
< | 
  CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") ); | 
| 136 | 
> | 
  CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT")  || isEqualIgnoreCase("LANGEVINDYNAMICS") ); | 
| 137 | 
  | 
  CheckParameter(Dt, isPositive()); | 
| 138 | 
  | 
  CheckParameter(RunTime, isPositive()); | 
| 139 | 
  | 
  CheckParameter(InitialConfig, isNotEmpty()); | 
| 174 | 
  | 
  CheckParameter(CutoffPolicy, isEqualIgnoreCase("MIX") || isEqualIgnoreCase("MAX") || isEqualIgnoreCase("TRADITIONAL")); | 
| 175 | 
  | 
  CheckParameter(SwitchingFunctionType, isEqualIgnoreCase("CUBIC") || isEqualIgnoreCase("FIFTH_ORDER_POLYNOMIAL")); | 
| 176 | 
  | 
  //CheckParameter(StatFileFormat,);      | 
| 174 | 
– | 
  //CheckParameter(MixingRule,); | 
| 177 | 
  | 
  CheckParameter(OrthoBoxTolerance, isPositive());   | 
| 178 | 
  | 
  CheckParameter(ThermIntDistSpringConst, isPositive()); | 
| 179 | 
  | 
  CheckParameter(ThermIntThetaSpringConst, isPositive()); | 
| 180 | 
  | 
  CheckParameter(ThermIntOmegaSpringConst, isPositive()); | 
| 181 | 
  | 
  CheckParameter(DampingAlpha,isNonNegative()); | 
| 182 | 
  | 
  CheckParameter(SkinThickness, isPositive()); | 
| 183 | 
< | 
 | 
| 183 | 
> | 
  CheckParameter(Viscosity,isNonNegative()); | 
| 184 | 
> | 
  CheckParameter(BeadSize,isPositive()); | 
| 185 | 
  | 
  for(std::vector<Component*>::iterator i = components_.begin(); i != components_.end(); ++i) { | 
| 186 | 
  | 
    if (!(*i)->findMoleculeStamp(moleculeStamps_)) { | 
| 187 | 
  | 
        std::ostringstream oss; |