| 74 |
|
DefineOptionalParameter(Seed, "seed"); |
| 75 |
|
DefineOptionalParameter(Minimizer, "minimizer"); |
| 76 |
|
DefineOptionalParameter(MinimizerMaxIter,"minimizerMaxIter"); |
| 77 |
< |
DefineOptionalParameter(MinimizerWriteFrq, "minimizerWriteFrq"); |
| 77 |
> |
DefineOptionalParameter(MinimizerWriteFreq, "minimizerWriteFreq"); |
| 78 |
|
DefineOptionalParameter(MinimizerStepSize, "minimizerStepSize"); |
| 79 |
|
DefineOptionalParameter(MinimizerFTol, "minimizerFTol"); |
| 80 |
|
DefineOptionalParameter(MinimizerGTol, "minimizerGTol"); |
| 92 |
|
DefineOptionalParameter(PrintPressureTensor, "printPressureTensor"); |
| 93 |
|
DefineOptionalParameter(TaggedAtomPair, "taggedAtomPair"); |
| 94 |
|
DefineOptionalParameter(PrintTaggedPairDistance, "printTaggedPairDistance"); |
| 95 |
– |
DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); |
| 95 |
|
DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); |
| 96 |
|
DefineOptionalParameter(HydroPropFile, "HydroPropFile"); |
| 97 |
|
DefineOptionalParameter(Viscosity, "viscosity"); |
| 100 |
|
DefineOptionalParameter(LangevinBufferRadius, "langevinBufferRadius"); |
| 101 |
|
DefineOptionalParameter(NeighborListNeighbors,"NeighborListNeighbors"); |
| 102 |
|
DefineOptionalParameter(UseMultipleTemperatureMethod, "useMultipleTemperatureMethod"); |
| 103 |
+ |
DefineOptionalParameter(ElectrostaticSummationMethod, "electrostaticSummationMethod"); |
| 104 |
|
DefineOptionalParameter(MTM_Ce, "MTM_Ce"); |
| 105 |
|
DefineOptionalParameter(MTM_G, "MTM_G"); |
| 106 |
|
DefineOptionalParameter(MTM_Io, "MTM_Io"); |
| 114 |
|
DefineOptionalParameterWithDefaultValue(UseInitalTime, "useInitialTime", false); |
| 115 |
|
DefineOptionalParameterWithDefaultValue(UseIntialExtendedSystemState, "useInitialExtendedSystemState", false); |
| 116 |
|
DefineOptionalParameterWithDefaultValue(OrthoBoxTolerance, "orthoBoxTolerance", 1E-6); |
| 117 |
< |
DefineOptionalParameterWithDefaultValue(ElectrostaticSummationMethod, "electrostaticSummationMethod", "SHIFTED_FORCE"); |
| 117 |
> |
DefineOptionalParameterWithDefaultValue(CutoffMethod, "cutoffMethod", "SHIFTED_FORCE"); |
| 118 |
|
DefineOptionalParameterWithDefaultValue(ElectrostaticScreeningMethod, "electrostaticScreeningMethod", "DAMPED"); |
| 119 |
< |
DefineOptionalParameterWithDefaultValue(Dielectric, "dielectric", 78.5); |
| 119 |
> |
DefineOptionalParameterWithDefaultValue(Dielectric, "dielectric", 80.0); |
| 120 |
|
DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); |
| 121 |
|
DefineOptionalParameterWithDefaultValue(OutputForceVector, "outputForceVector", 0); |
| 122 |
|
DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); |
| 137 |
|
DefineOptionalParameterWithDefaultValue(HULL_Method,"HULL_Method","Convex"); |
| 138 |
|
|
| 139 |
|
|
| 140 |
+ |
|
| 141 |
|
deprecatedKeywords_.insert("nComponents"); |
| 142 |
|
deprecatedKeywords_.insert("nZconstraints"); |
| 143 |
|
deprecatedKeywords_.insert("initialConfig"); |
| 178 |
|
CheckParameter(Seed, isPositive()); |
| 179 |
|
CheckParameter(Minimizer, isEqualIgnoreCase("SD") || isEqualIgnoreCase("CG")); |
| 180 |
|
CheckParameter(MinimizerMaxIter, isPositive()); |
| 181 |
< |
CheckParameter(MinimizerWriteFrq, isPositive()); |
| 181 |
> |
CheckParameter(MinimizerWriteFreq, isPositive()); |
| 182 |
|
CheckParameter(MinimizerStepSize, isPositive()); |
| 183 |
|
CheckParameter(MinimizerFTol, isPositive()); |
| 184 |
|
CheckParameter(MinimizerGTol, isPositive()); |
| 190 |
|
CheckParameter(ThermodynamicIntegrationK, isPositive()); |
| 191 |
|
CheckParameter(ForceFieldVariant, isNotEmpty()); |
| 192 |
|
CheckParameter(ForceFieldFileName, isNotEmpty()); |
| 193 |
< |
CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase("NONE") || isEqualIgnoreCase("SHIFTED_POTENTIAL") || isEqualIgnoreCase("SHIFTED_FORCE") || isEqualIgnoreCase("REACTION_FIELD")); |
| 193 |
< |
CheckParameter(ElectrostaticScreeningMethod, isEqualIgnoreCase("UNDAMPED") || isEqualIgnoreCase("DAMPED")); |
| 193 |
> |
CheckParameter(CutoffMethod, isEqualIgnoreCase("HARD") || isEqualIgnoreCase("SWITCHED") || isEqualIgnoreCase("SHIFTED_POTENTIAL") || isEqualIgnoreCase("SHIFTED_FORCE")); |
| 194 |
|
CheckParameter(CutoffPolicy, isEqualIgnoreCase("MIX") || isEqualIgnoreCase("MAX") || isEqualIgnoreCase("TRADITIONAL")); |
| 195 |
+ |
CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase("HARD") || isEqualIgnoreCase("SWITCHED") || isEqualIgnoreCase("SHIFTED_POTENTIAL") || isEqualIgnoreCase("SHIFTED_FORCE") || isEqualIgnoreCase("REACTION_FIELD")); |
| 196 |
+ |
CheckParameter(ElectrostaticScreeningMethod, isEqualIgnoreCase("UNDAMPED") || isEqualIgnoreCase("DAMPED")); |
| 197 |
|
CheckParameter(SwitchingFunctionType, isEqualIgnoreCase("CUBIC") || isEqualIgnoreCase("FIFTH_ORDER_POLYNOMIAL")); |
| 196 |
– |
//CheckParameter(StatFileFormat,); |
| 198 |
|
CheckParameter(OrthoBoxTolerance, isPositive()); |
| 199 |
|
CheckParameter(DampingAlpha,isNonNegative()); |
| 200 |
|
CheckParameter(SkinThickness, isPositive()); |