--- trunk/src/io/Globals.cpp 2009/05/08 19:47:05 1341 +++ trunk/src/io/Globals.cpp 2009/06/15 20:12:09 1354 @@ -137,6 +137,14 @@ Globals::Globals() { DefineOptionalParameterWithDefaultValue(RNEMD_nBins, "RNEMD_nBins", 16); DefineOptionalParameterWithDefaultValue(RNEMD_swapType, "RNEMD_swapType", "Kinetic"); DefineOptionalParameterWithDefaultValue(RNEMD_objectSelection, "RNEMD_objectSelection", "select all"); + DefineOptionalParameterWithDefaultValue(UseRestraints, "UseRestraints", false); + DefineOptionalParameterWithDefaultValue(Restraint_objectSelection, "Restraint_objectSelection", "select all"); + DefineOptionalParameterWithDefaultValue(Restraint_type, "Restraint_type", "positional"); + DefineOptionalParameterWithDefaultValue(Restraint_file, "Restraint_file", "idealCrystal.in"); + DefineOptionalParameterWithDefaultValue(Restraint_DisplacementSpringConstant, "Restraint_DisplacementSpringConstant", 0.0); + DefineOptionalParameterWithDefaultValue(Restraint_RollSpringConstant, "Restraint_RollSpringConstant", 0.0); // phi + DefineOptionalParameterWithDefaultValue(Restraint_PitchSpringConstant, "Restraint_PitchSpringConstant", 0.0); // theta + DefineOptionalParameterWithDefaultValue(Restraint_YawSpringConstant, "Restraint_YawSpringConstant", 0.0); // psi deprecatedKeywords_.insert("nComponents"); @@ -207,6 +215,11 @@ void Globals::validate() { CheckParameter(RNEMD_swapTime, isPositive()); CheckParameter(RNEMD_nBins, isPositive() && isEven()); CheckParameter(RNEMD_swapType, isEqualIgnoreCase("Kinetic") || isEqualIgnoreCase("Px") || isEqualIgnoreCase("Py") || isEqualIgnoreCase("Pz")); + CheckParameter(Restraint_DisplacementSpringConstant, isNonNegative()); + CheckParameter(Restraint_RollSpringConstant, isNonNegative()); + CheckParameter(Restraint_PitchSpringConstant, isNonNegative()); + CheckParameter(Restraint_YawSpringConstant, isNonNegative()); + CheckParameter(Restraint_type, isEqualIgnoreCase("P") || isEqualIgnoreCase("O") || isEqualIgnoreCase("P+O") || isEqualIgnoreCase("RMSD_P") || isEqualIgnoreCase("RMSD_O") || isEqualIgnoreCase("RMSD_P+RMSD_O")); for(std::vector::iterator i = components_.begin(); i != components_.end(); ++i) { if (!(*i)->findMoleculeStamp(moleculeStamps_)) {