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/* |
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/* |
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* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. |
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* |
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* The University of Notre Dame grants you ("Licensee") a |
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* redistribute this software in source and binary code form, provided |
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* that the following conditions are met: |
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* |
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* 1. Acknowledgement of the program authors must be made in any |
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* publication of scientific results based in part on use of the |
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* program. An acceptable form of acknowledgement is citation of |
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* the article in which the program was described (Matthew |
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* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
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* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
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* Parallel Simulation Engine for Molecular Dynamics," |
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* J. Comput. Chem. 26, pp. 252-271 (2005)) |
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* |
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* 2. Redistributions of source code must retain the above copyright |
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* 1. Redistributions of source code must retain the above copyright |
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* notice, this list of conditions and the following disclaimer. |
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* |
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* 3. Redistributions in binary form must reproduce the above copyright |
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* 2. Redistributions in binary form must reproduce the above copyright |
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* notice, this list of conditions and the following disclaimer in the |
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* documentation and/or other materials provided with the |
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* distribution. |
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* arising out of the use of or inability to use software, even if the |
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* University of Notre Dame has been advised of the possibility of |
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* such damages. |
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* |
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your |
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* research, please cite the appropriate papers when you publish your |
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* work. Good starting points are: |
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* |
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* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
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* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
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* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
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* [4] Vardeman & Gezelter, in progress (2009). |
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*/ |
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#ifndef LATTICE_LATTICE_HPP |
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#define LATTICE_LATTICE_HPP |
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#include "lattice/BaseLattice.hpp" |
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#include <string> |
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#ifndef LATTICE_BASELATTICE_HPP |
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#define LATTICE_BASELATTICE_HPP |
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|
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#include <vector> |
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#include "math/Vector3.hpp" |
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|
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namespace oopse { |
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namespace OpenMD { |
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|
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const std::string FCCLatticeType = "FCC"; |
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const std::string BCCLatticeType = "BCC"; |
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const std::string HCPCLatticeType = "HCP"; |
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const std::string OrthorhombicLatticeType = "ORTHORHOMBIC"; |
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|
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|
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class CubicLattice : public BaseLattice{ |
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class Lattice{ |
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protected: |
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CubicLattice(); |
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Lattice(){ |
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|
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setOrigin(V3Zero); |
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} |
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|
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public: |
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|
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//virtual destructor of Lattice |
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virtual ~Lattice() {} |
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|
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int getNumSitesPerCell() {return nCellSites;} |
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|
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void getLatticePointsPos(std::vector<Vector3d>& latticePos, int nx, int ny, int nz); |
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|
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std::vector<Vector3d> getLatticePointsOrt() {return cellSitesOrt;} |
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|
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//get lattice constant of unit cell |
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virtual std::vector<double> getLatticeConstant(); |
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virtual std::vector<RealType> getLatticeConstant() =0; |
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//set lattice constant of unit cell |
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virtual void setLatticeConstant(const std::vector<double>& lc); |
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protected: |
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double latticeParam; |
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}; |
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virtual void setLatticeConstant(const std::vector<RealType>& lc)=0; |
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//get origin of unit cell |
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Vector3d getOrigin( ) {return origin;} |
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class FCCLattice : public CubicLattice{ |
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public: |
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FCCLattice(); |
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virtual const std::string getLatticeType() {return FCCLatticeType;} |
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virtual void update(); |
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//set origin of unit cell |
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void setOrigin(const Vector3d& newOrigin){ |
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this->origin = newOrigin; |
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} |
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|
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protected: |
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virtual void update() =0; |
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}; |
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int nCellSites; |
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Vector3d origin; |
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std::vector<Vector3d> cellSitesPos; |
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std::vector<Vector3d> cellSitesOrt; |
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Vector3d cellLen; |
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}; |
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|
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} |
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#endif |
