# | Line 34 | Line 34 | |
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34 | * | |
35 | * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). | |
36 | * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). | |
37 | < | * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
38 | < | * [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
39 | < | * [4] , Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). * |
37 | > | * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008). |
38 | > | * [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
39 | > | * [4] Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). * |
40 | * | |
41 | * sphericalLattice.cpp | |
42 | * | |
43 | * Created by Charles F. Vardeman II on 17 Feb 2006. | |
44 | + | * Edited by Kelsey M. Stocker on 23 Feb 2012. |
45 | * @author Charles F. Vardeman II | |
46 | * @version $Id$ | |
47 | * | |
# | Line 52 | Line 53 | |
53 | #include "brains/Register.hpp" | |
54 | #include "lattice/LatticeFactory.hpp" | |
55 | ||
56 | + | using namespace std; |
57 | namespace OpenMD{ | |
58 | < | shapedLattice::shapedLattice(RealType latticeConstant, |
59 | < | std::string latticeType) { |
60 | < | latticeConstant_ = latticeConstant; |
59 | < | latticeType_ = latticeType; |
58 | > | shapedLattice::shapedLattice(RealType latticeConstant, string latticeType) |
59 | > | : latticeConstant_(latticeConstant), latticeType_(latticeType) { |
60 | > | |
61 | registerLattice(); | |
62 | simpleLattice_ = LatticeFactory::getInstance()->createLattice(latticeType); | |
63 | if (simpleLattice_ == NULL){ | |
# | Line 80 | Line 81 | namespace OpenMD{ | |
81 | endNx_ = (int) ceil(0.5*dimension_[0]/latticeConstant_); | |
82 | endNy_ = (int) ceil(0.5*dimension_[1]/latticeConstant_); | |
83 | endNz_ = (int) ceil(0.5*dimension_[2]/latticeConstant_); | |
84 | + | std::cerr << "begin = " << beginNx_ << " " << beginNy_ << " " << beginNz_ << "\n"; |
85 | + | std::cerr << "end = " << endNx_ << " " << endNy_ << " " << endNz_ << "\n"; |
86 | sitesComputed_ = false; | |
87 | } | |
88 |
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