--- branches/development/src/math/ConvexHull.cpp 2011/09/12 17:09:26 1618 +++ branches/development/src/math/ConvexHull.cpp 2013/01/09 19:27:52 1825 @@ -35,9 +35,9 @@ * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). - * [4] Vardeman & Gezelter, in progress (2009). + * [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). + * [4] , Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). * * - * * ConvexHull.cpp * * Purpose: To calculate convexhull, hull volume libqhull. @@ -62,20 +62,10 @@ #include #endif -using namespace OpenMD; +#include "math/qhull.hpp" #ifdef HAVE_QHULL -extern "C" -{ -#include -#include -#include -#include -#include -#include -#include -#include -} +using namespace OpenMD; ConvexHull::ConvexHull() : Hull(), dim_(3), options_("qhull Qt Pp") { } @@ -90,13 +80,14 @@ void ConvexHull::computeHull(std::vector facetT *facet; setT *vertices; int curlong, totlong; - pointT *intPoint; + // pointT *intPoint; std::vector ptArray(numpoints*dim_); // Copy the positon vector into a points vector for qhull. std::vector::iterator SD; int i = 0; + for (SD =bodydoubles.begin(); SD != bodydoubles.end(); ++SD){ Vector3d pos = (*SD)->getPos(); ptArray[dim_ * i] = pos.x(); @@ -214,8 +205,9 @@ void ConvexHull::computeHull(std::vector } //qh_new_qhull #endif - intPoint = qh interior_point; - RealType calcvol = 0.0; + // commented out below, so comment out here also. + // intPoint = qh interior_point; + // RealType calcvol = 0.0; FORALLfacets { Triangle face; //Qhull sets the unit normal in facet->normal @@ -274,7 +266,7 @@ void ConvexHull::computeHull(std::vector face.addVertices(p[0], p[1], p[2]); face.setFacetMass(faceMass); - face.setFacetVelocity(faceVel/3.0); + face.setFacetVelocity(faceVel / RealType(3.0)); /* RealType comparea = face.computeArea(); realT calcarea = qh_facetarea (facet);