--- trunk/src/math/SphericalHarmonic.cpp 2006/09/25 22:08:33 1051 +++ branches/development/src/math/SphericalHarmonic.cpp 2013/05/17 14:41:42 1875 @@ -6,19 +6,10 @@ * redistribute this software in source and binary code form, provided * that the following conditions are met: * - * 1. Acknowledgement of the program authors must be made in any - * publication of scientific results based in part on use of the - * program. An acceptable form of acknowledgement is citation of - * the article in which the program was described (Matthew - * A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher - * J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented - * Parallel Simulation Engine for Molecular Dynamics," - * J. Comput. Chem. 26, pp. 252-271 (2005)) - * - * 2. Redistributions of source code must retain the above copyright + * 1. Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * - * 3. Redistributions in binary form must reproduce the above copyright + * 2. Redistributions in binary form must reproduce the above copyright * notice, this list of conditions and the following disclaimer in the * documentation and/or other materials provided with the * distribution. @@ -37,15 +28,26 @@ * arising out of the use of or inability to use software, even if the * University of Notre Dame has been advised of the possibility of * such damages. + * + * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your + * research, please cite the appropriate papers when you publish your + * work. Good starting points are: + * + * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). + * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). + * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008). + * [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). + * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). */ - + +#include "config.h" #include #include #include #include "math/SphericalHarmonic.hpp" #include "utils/simError.h" -using namespace oopse; +using namespace OpenMD; SphericalHarmonic::SphericalHarmonic() { } @@ -66,9 +68,7 @@ RealType SphericalHarmonic::LegendreP(int l,int m, Rea // RealType SphericalHarmonic::LegendreP(int l,int m, RealType x) { - RealType temp1, temp2, temp3, temp4, result; - RealType temp5; - int i, ll; + RealType result; if (fabs(x) > 1.0) { printf("LegendreP: x out of range: l = %d\tm = %d\tx = %lf\n", l, m, x); @@ -84,12 +84,13 @@ RealType SphericalHarmonic::LegendreP(int l,int m, Rea printf("LegendreP: m < 0: l = %d\tm = %d\tx = %lf\n", l, m, x); return std::numeric_limits :: quiet_NaN(); } else { + RealType temp1, temp2, temp3, temp4, temp5; temp3=1.0; if (m>0) { temp1=sqrt(1.0-pow(x,2)); temp5 = 1.0; - for (i=1;i<=m;++i) { + for (int i=1;i<=m;++i) { temp3 *= -temp5*temp1; temp5 += 2.0; } @@ -101,7 +102,7 @@ RealType SphericalHarmonic::LegendreP(int l,int m, Rea if (l==(m+1)) { result = temp4; } else { - for (ll=(m+2);ll<=l;++ll) { + for (int ll=(m+2);ll<=l;++ll) { temp2 = (x*(2.*ll-1.)*temp4-(ll+m-1.)*temp3)/(RealType)(ll-m); temp3=temp4; temp4=temp2;