--- trunk/src/math/Triangle.cpp 2009/05/13 22:27:29 1344 +++ branches/development/src/math/Triangle.cpp 2010/07/09 23:08:25 1465 @@ -1,23 +1,14 @@ -/* Copyright (c) 2008 The University of Notre Dame. All Rights Reserved. +/* Copyright (c) 2008, 2010 The University of Notre Dame. All Rights Reserved. * * The University of Notre Dame grants you ("Licensee") a * non-exclusive, royalty free, license to use, modify and * redistribute this software in source and binary code form, provided * that the following conditions are met: * - * 1. Acknowledgement of the program authors must be made in any - * publication of scientific results based in part on use of the - * program. An acceptable form of acknowledgement is citation of - * the article in which the program was described (Matthew - * A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher - * J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented - * Parallel Simulation Engine for Molecular Dynamics," - * J. Comput. Chem. 26, pp. 252-271 (2005)) - * - * 2. Redistributions of source code must retain the above copyright + * 1. Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * - * 3. Redistributions in binary form must reproduce the above copyright + * 2. Redistributions in binary form must reproduce the above copyright * notice, this list of conditions and the following disclaimer in the * documentation and/or other materials provided with the * distribution. @@ -37,23 +28,32 @@ * University of Notre Dame has been advised of the possibility of * such damages. * + * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your + * research, please cite the appropriate papers when you publish your + * work. Good starting points are: + * + * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). + * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). + * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). + * [4] Vardeman & Gezelter, in progress (2009). * + * * Triangle.cpp * - * Purpose: Provide basic triangle object for OOPSE + * Purpose: Provide basic triangle object for OpenMD * * Created by Charles F. Vardeman II on 29 July 2008. * @author Charles F. Vardeman II - * @version $Id: Triangle.cpp,v 1.3 2009-05-13 22:27:29 gezelter Exp $ + * @version $Id$ * */ #include "math/Triangle.hpp" -using namespace oopse; +using namespace OpenMD; -Triangle::Triangle() : HaveNormal_(false), HaveCentroid_(false), +Triangle::Triangle() : HaveNormal_(false), HaveUnitNormal_(false), HaveCentroid_(false), HaveArea_(false), area_(0.0), normal_(V3Zero), centroid_(V3Zero), facetVelocity_(V3Zero), mass_(0.0), a_(V3Zero), b_(V3Zero), c_(V3Zero){ @@ -76,12 +76,19 @@ RealType Triangle::computeArea(){ area_ = getNormal().length() * 0.5; return area_; } - +// This should return the normal for our calculations. Vector3d Triangle::computeNormal(){ HaveNormal_ = true; normal_ = cross(a_,b_); return normal_; } +// This should return the normal for our calculations. +Vector3d Triangle::computeUnitNormal(){ + HaveUnitNormal_ = true; + unitnormal_ = cross(a_,b_); + unitnormal_.normalize(); + return unitnormal_; +} Vector3d Triangle::computeCentroid(){ HaveCentroid_ = true;