| 1 | /* $ANTLR 2.7.7 (20110725): "MDTreeParser.g" -> "MDTreeParser.cpp"$ */ | 
| 2 | #include "MDTreeParser.hpp" | 
| 3 | #include <antlr/Token.hpp> | 
| 4 | #include <antlr/AST.hpp> | 
| 5 | #include <antlr/NoViableAltException.hpp> | 
| 6 | #include <antlr/MismatchedTokenException.hpp> | 
| 7 | #include <antlr/SemanticException.hpp> | 
| 8 | #include <antlr/BitSet.hpp> | 
| 9 | #line 1 "MDTreeParser.g" | 
| 10 | #line 11 "MDTreeParser.cpp" | 
| 11 | MDTreeParser::MDTreeParser() | 
| 12 | : ANTLR_USE_NAMESPACE(antlr)TreeParser() { | 
| 13 | } | 
| 14 |  | 
| 15 | void MDTreeParser::mdfile(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 16 | ANTLR_USE_NAMESPACE(antlr)RefAST mdfile_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 17 |  | 
| 18 | try {      // for error handling | 
| 19 | { // ( ... )* | 
| 20 | for (;;) { | 
| 21 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 22 | _t = ASTNULL; | 
| 23 | if ((_tokenSet_0.member(_t->getType()))) { | 
| 24 | statement(_t); | 
| 25 | _t = _retTree; | 
| 26 | } | 
| 27 | else { | 
| 28 | goto _loop3; | 
| 29 | } | 
| 30 |  | 
| 31 | } | 
| 32 | _loop3:; | 
| 33 | } // ( ... )* | 
| 34 | #line 34 "MDTreeParser.g" | 
| 35 | blockStack.top()->validate(); blockStack.pop(); | 
| 36 | #line 37 "MDTreeParser.cpp" | 
| 37 | } | 
| 38 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 39 | reportError(ex); | 
| 40 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 41 | _t = _t->getNextSibling(); | 
| 42 | } | 
| 43 | _retTree = _t; | 
| 44 | } | 
| 45 |  | 
| 46 | void MDTreeParser::statement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 47 | ANTLR_USE_NAMESPACE(antlr)RefAST statement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 48 |  | 
| 49 | try {      // for error handling | 
| 50 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 51 | _t = ASTNULL; | 
| 52 | switch ( _t->getType()) { | 
| 53 | case ASSIGNEQUAL: | 
| 54 | { | 
| 55 | assignment(_t); | 
| 56 | _t = _retTree; | 
| 57 | break; | 
| 58 | } | 
| 59 | case COMPONENT: | 
| 60 | { | 
| 61 | componentblock(_t); | 
| 62 | _t = _retTree; | 
| 63 | break; | 
| 64 | } | 
| 65 | case MOLECULE: | 
| 66 | { | 
| 67 | moleculeblock(_t); | 
| 68 | _t = _retTree; | 
| 69 | break; | 
| 70 | } | 
| 71 | case ZCONSTRAINT: | 
| 72 | { | 
| 73 | zconstraintblock(_t); | 
| 74 | _t = _retTree; | 
| 75 | break; | 
| 76 | } | 
| 77 | case RESTRAINT: | 
| 78 | { | 
| 79 | restraintblock(_t); | 
| 80 | _t = _retTree; | 
| 81 | break; | 
| 82 | } | 
| 83 | case FLUCQ: | 
| 84 | { | 
| 85 | flucqblock(_t); | 
| 86 | _t = _retTree; | 
| 87 | break; | 
| 88 | } | 
| 89 | case RNEMD: | 
| 90 | { | 
| 91 | rnemdblock(_t); | 
| 92 | _t = _retTree; | 
| 93 | break; | 
| 94 | } | 
| 95 | case MINIMIZER: | 
| 96 | { | 
| 97 | minimizerblock(_t); | 
| 98 | _t = _retTree; | 
| 99 | break; | 
| 100 | } | 
| 101 | default: | 
| 102 | { | 
| 103 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 104 | } | 
| 105 | } | 
| 106 | } | 
| 107 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 108 | reportError(ex); | 
| 109 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 110 | _t = _t->getNextSibling(); | 
| 111 | } | 
| 112 | _retTree = _t; | 
| 113 | } | 
| 114 |  | 
| 115 | void MDTreeParser::assignment(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 116 | ANTLR_USE_NAMESPACE(antlr)RefAST assignment_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 117 | ANTLR_USE_NAMESPACE(antlr)RefAST id = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 118 |  | 
| 119 | try {      // for error handling | 
| 120 | ANTLR_USE_NAMESPACE(antlr)RefAST __t6 = _t; | 
| 121 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp1_AST_in = _t; | 
| 122 | match(_t,ASSIGNEQUAL); | 
| 123 | _t = _t->getFirstChild(); | 
| 124 | id = _t; | 
| 125 | match(_t,ID); | 
| 126 | _t = _t->getNextSibling(); | 
| 127 | constant(_t,id); | 
| 128 | _t = _retTree; | 
| 129 | _t = __t6; | 
| 130 | _t = _t->getNextSibling(); | 
| 131 | } | 
| 132 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 133 | reportError(ex); | 
| 134 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 135 | _t = _t->getNextSibling(); | 
| 136 | } | 
| 137 | _retTree = _t; | 
| 138 | } | 
| 139 |  | 
| 140 | void MDTreeParser::componentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 141 | ANTLR_USE_NAMESPACE(antlr)RefAST componentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 142 |  | 
| 143 | try {      // for error handling | 
| 144 | ANTLR_USE_NAMESPACE(antlr)RefAST __t9 = _t; | 
| 145 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp2_AST_in = _t; | 
| 146 | match(_t,COMPONENT); | 
| 147 | _t = _t->getFirstChild(); | 
| 148 | #line 65 "MDTreeParser.g" | 
| 149 | Component* currComponet = new Component(); blockStack.push(currComponet); | 
| 150 | #line 151 "MDTreeParser.cpp" | 
| 151 | { // ( ... )* | 
| 152 | for (;;) { | 
| 153 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 154 | _t = ASTNULL; | 
| 155 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 156 | assignment(_t); | 
| 157 | _t = _retTree; | 
| 158 | } | 
| 159 | else { | 
| 160 | goto _loop11; | 
| 161 | } | 
| 162 |  | 
| 163 | } | 
| 164 | _loop11:; | 
| 165 | } // ( ... )* | 
| 166 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp3_AST_in = _t; | 
| 167 | match(_t,ENDBLOCK); | 
| 168 | _t = _t->getNextSibling(); | 
| 169 | _t = __t9; | 
| 170 | _t = _t->getNextSibling(); | 
| 171 | #line 67 "MDTreeParser.g" | 
| 172 | blockStack.top()->validate();blockStack.pop(); currConf->addComponent(currComponet); | 
| 173 | #line 174 "MDTreeParser.cpp" | 
| 174 | } | 
| 175 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 176 | reportError(ex); | 
| 177 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 178 | _t = _t->getNextSibling(); | 
| 179 | } | 
| 180 | _retTree = _t; | 
| 181 | } | 
| 182 |  | 
| 183 | void MDTreeParser::moleculeblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 184 | ANTLR_USE_NAMESPACE(antlr)RefAST moleculeblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 185 |  | 
| 186 | try {      // for error handling | 
| 187 | ANTLR_USE_NAMESPACE(antlr)RefAST __t33 = _t; | 
| 188 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp4_AST_in = _t; | 
| 189 | match(_t,MOLECULE); | 
| 190 | _t = _t->getFirstChild(); | 
| 191 | #line 96 "MDTreeParser.g" | 
| 192 | MoleculeStamp* currMoleculeStamp = new MoleculeStamp(); blockStack.push(currMoleculeStamp); | 
| 193 | #line 194 "MDTreeParser.cpp" | 
| 194 | { // ( ... )* | 
| 195 | for (;;) { | 
| 196 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 197 | _t = ASTNULL; | 
| 198 | if ((_tokenSet_1.member(_t->getType()))) { | 
| 199 | moleculestatement(_t); | 
| 200 | _t = _retTree; | 
| 201 | } | 
| 202 | else { | 
| 203 | goto _loop35; | 
| 204 | } | 
| 205 |  | 
| 206 | } | 
| 207 | _loop35:; | 
| 208 | } // ( ... )* | 
| 209 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp5_AST_in = _t; | 
| 210 | match(_t,ENDBLOCK); | 
| 211 | _t = _t->getNextSibling(); | 
| 212 | _t = __t33; | 
| 213 | _t = _t->getNextSibling(); | 
| 214 | #line 98 "MDTreeParser.g" | 
| 215 | blockStack.top()->validate(); blockStack.pop(); currConf->addMoleculeStamp(currMoleculeStamp); | 
| 216 | #line 217 "MDTreeParser.cpp" | 
| 217 | } | 
| 218 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 219 | reportError(ex); | 
| 220 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 221 | _t = _t->getNextSibling(); | 
| 222 | } | 
| 223 | _retTree = _t; | 
| 224 | } | 
| 225 |  | 
| 226 | void MDTreeParser::zconstraintblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 227 | ANTLR_USE_NAMESPACE(antlr)RefAST zconstraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 228 |  | 
| 229 | try {      // for error handling | 
| 230 | ANTLR_USE_NAMESPACE(antlr)RefAST __t13 = _t; | 
| 231 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp6_AST_in = _t; | 
| 232 | match(_t,ZCONSTRAINT); | 
| 233 | _t = _t->getFirstChild(); | 
| 234 | #line 70 "MDTreeParser.g" | 
| 235 | ZConsStamp* currZConsStamp = new ZConsStamp(); blockStack.push(currZConsStamp); | 
| 236 | #line 237 "MDTreeParser.cpp" | 
| 237 | { // ( ... )* | 
| 238 | for (;;) { | 
| 239 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 240 | _t = ASTNULL; | 
| 241 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 242 | assignment(_t); | 
| 243 | _t = _retTree; | 
| 244 | } | 
| 245 | else { | 
| 246 | goto _loop15; | 
| 247 | } | 
| 248 |  | 
| 249 | } | 
| 250 | _loop15:; | 
| 251 | } // ( ... )* | 
| 252 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp7_AST_in = _t; | 
| 253 | match(_t,ENDBLOCK); | 
| 254 | _t = _t->getNextSibling(); | 
| 255 | _t = __t13; | 
| 256 | _t = _t->getNextSibling(); | 
| 257 | #line 72 "MDTreeParser.g" | 
| 258 | blockStack.top()->validate();blockStack.pop(); currConf->addZConsStamp(currZConsStamp); | 
| 259 | #line 260 "MDTreeParser.cpp" | 
| 260 | } | 
| 261 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 262 | reportError(ex); | 
| 263 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 264 | _t = _t->getNextSibling(); | 
| 265 | } | 
| 266 | _retTree = _t; | 
| 267 | } | 
| 268 |  | 
| 269 | void MDTreeParser::restraintblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 270 | ANTLR_USE_NAMESPACE(antlr)RefAST restraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 271 |  | 
| 272 | try {      // for error handling | 
| 273 | ANTLR_USE_NAMESPACE(antlr)RefAST __t17 = _t; | 
| 274 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp8_AST_in = _t; | 
| 275 | match(_t,RESTRAINT); | 
| 276 | _t = _t->getFirstChild(); | 
| 277 | #line 75 "MDTreeParser.g" | 
| 278 | RestraintStamp* currRestraintStamp = new RestraintStamp(); blockStack.push(currRestraintStamp); | 
| 279 | #line 280 "MDTreeParser.cpp" | 
| 280 | { // ( ... )* | 
| 281 | for (;;) { | 
| 282 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 283 | _t = ASTNULL; | 
| 284 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 285 | assignment(_t); | 
| 286 | _t = _retTree; | 
| 287 | } | 
| 288 | else { | 
| 289 | goto _loop19; | 
| 290 | } | 
| 291 |  | 
| 292 | } | 
| 293 | _loop19:; | 
| 294 | } // ( ... )* | 
| 295 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp9_AST_in = _t; | 
| 296 | match(_t,ENDBLOCK); | 
| 297 | _t = _t->getNextSibling(); | 
| 298 | _t = __t17; | 
| 299 | _t = _t->getNextSibling(); | 
| 300 | #line 77 "MDTreeParser.g" | 
| 301 | blockStack.top()->validate();blockStack.pop(); currConf->addRestraintStamp(currRestraintStamp); | 
| 302 | #line 303 "MDTreeParser.cpp" | 
| 303 | } | 
| 304 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 305 | reportError(ex); | 
| 306 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 307 | _t = _t->getNextSibling(); | 
| 308 | } | 
| 309 | _retTree = _t; | 
| 310 | } | 
| 311 |  | 
| 312 | void MDTreeParser::flucqblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 313 | ANTLR_USE_NAMESPACE(antlr)RefAST flucqblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 314 |  | 
| 315 | try {      // for error handling | 
| 316 | ANTLR_USE_NAMESPACE(antlr)RefAST __t21 = _t; | 
| 317 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp10_AST_in = _t; | 
| 318 | match(_t,FLUCQ); | 
| 319 | _t = _t->getFirstChild(); | 
| 320 | #line 80 "MDTreeParser.g" | 
| 321 | FluctuatingChargeParameters* flucQpars = new FluctuatingChargeParameters(); blockStack.push(flucQpars); | 
| 322 | #line 323 "MDTreeParser.cpp" | 
| 323 | { // ( ... )* | 
| 324 | for (;;) { | 
| 325 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 326 | _t = ASTNULL; | 
| 327 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 328 | assignment(_t); | 
| 329 | _t = _retTree; | 
| 330 | } | 
| 331 | else { | 
| 332 | goto _loop23; | 
| 333 | } | 
| 334 |  | 
| 335 | } | 
| 336 | _loop23:; | 
| 337 | } // ( ... )* | 
| 338 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp11_AST_in = _t; | 
| 339 | match(_t,ENDBLOCK); | 
| 340 | _t = _t->getNextSibling(); | 
| 341 | _t = __t21; | 
| 342 | _t = _t->getNextSibling(); | 
| 343 | #line 82 "MDTreeParser.g" | 
| 344 | blockStack.top()->validate();blockStack.pop(); currConf->addFluctuatingChargeParameters(flucQpars); | 
| 345 | #line 346 "MDTreeParser.cpp" | 
| 346 | } | 
| 347 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 348 | reportError(ex); | 
| 349 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 350 | _t = _t->getNextSibling(); | 
| 351 | } | 
| 352 | _retTree = _t; | 
| 353 | } | 
| 354 |  | 
| 355 | void MDTreeParser::rnemdblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 356 | ANTLR_USE_NAMESPACE(antlr)RefAST rnemdblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 357 |  | 
| 358 | try {      // for error handling | 
| 359 | ANTLR_USE_NAMESPACE(antlr)RefAST __t25 = _t; | 
| 360 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp12_AST_in = _t; | 
| 361 | match(_t,RNEMD); | 
| 362 | _t = _t->getFirstChild(); | 
| 363 | #line 85 "MDTreeParser.g" | 
| 364 | RNEMDParameters* rnemdPars = new RNEMDParameters(); blockStack.push(rnemdPars); | 
| 365 | #line 366 "MDTreeParser.cpp" | 
| 366 | { // ( ... )* | 
| 367 | for (;;) { | 
| 368 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 369 | _t = ASTNULL; | 
| 370 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 371 | assignment(_t); | 
| 372 | _t = _retTree; | 
| 373 | } | 
| 374 | else { | 
| 375 | goto _loop27; | 
| 376 | } | 
| 377 |  | 
| 378 | } | 
| 379 | _loop27:; | 
| 380 | } // ( ... )* | 
| 381 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp13_AST_in = _t; | 
| 382 | match(_t,ENDBLOCK); | 
| 383 | _t = _t->getNextSibling(); | 
| 384 | _t = __t25; | 
| 385 | _t = _t->getNextSibling(); | 
| 386 | #line 87 "MDTreeParser.g" | 
| 387 | blockStack.top()->validate();blockStack.pop(); currConf->addRNEMDParameters(rnemdPars); | 
| 388 | #line 389 "MDTreeParser.cpp" | 
| 389 | } | 
| 390 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 391 | reportError(ex); | 
| 392 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 393 | _t = _t->getNextSibling(); | 
| 394 | } | 
| 395 | _retTree = _t; | 
| 396 | } | 
| 397 |  | 
| 398 | void MDTreeParser::minimizerblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 399 | ANTLR_USE_NAMESPACE(antlr)RefAST minimizerblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 400 |  | 
| 401 | try {      // for error handling | 
| 402 | ANTLR_USE_NAMESPACE(antlr)RefAST __t29 = _t; | 
| 403 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp14_AST_in = _t; | 
| 404 | match(_t,MINIMIZER); | 
| 405 | _t = _t->getFirstChild(); | 
| 406 | #line 90 "MDTreeParser.g" | 
| 407 | MinimizerParameters* minimizerPars = new MinimizerParameters(); blockStack.push(minimizerPars); | 
| 408 | #line 409 "MDTreeParser.cpp" | 
| 409 | { // ( ... )* | 
| 410 | for (;;) { | 
| 411 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 412 | _t = ASTNULL; | 
| 413 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 414 | assignment(_t); | 
| 415 | _t = _retTree; | 
| 416 | } | 
| 417 | else { | 
| 418 | goto _loop31; | 
| 419 | } | 
| 420 |  | 
| 421 | } | 
| 422 | _loop31:; | 
| 423 | } // ( ... )* | 
| 424 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp15_AST_in = _t; | 
| 425 | match(_t,ENDBLOCK); | 
| 426 | _t = _t->getNextSibling(); | 
| 427 | _t = __t29; | 
| 428 | _t = _t->getNextSibling(); | 
| 429 | #line 92 "MDTreeParser.g" | 
| 430 | blockStack.top()->validate();blockStack.pop(); currConf->addMinimizerParameters(minimizerPars); | 
| 431 | #line 432 "MDTreeParser.cpp" | 
| 432 | } | 
| 433 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 434 | reportError(ex); | 
| 435 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 436 | _t = _t->getNextSibling(); | 
| 437 | } | 
| 438 | _retTree = _t; | 
| 439 | } | 
| 440 |  | 
| 441 | void MDTreeParser::constant(ANTLR_USE_NAMESPACE(antlr)RefAST _t, | 
| 442 | ANTLR_USE_NAMESPACE(antlr)RefAST id | 
| 443 | ) { | 
| 444 | ANTLR_USE_NAMESPACE(antlr)RefAST constant_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 445 | ANTLR_USE_NAMESPACE(antlr)RefAST str1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 446 | ANTLR_USE_NAMESPACE(antlr)RefAST str2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 447 | #line 50 "MDTreeParser.g" | 
| 448 |  | 
| 449 | int ival; | 
| 450 | RealType dval; | 
| 451 |  | 
| 452 | #line 453 "MDTreeParser.cpp" | 
| 453 |  | 
| 454 | try {      // for error handling | 
| 455 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 456 | _t = ASTNULL; | 
| 457 | switch ( _t->getType()) { | 
| 458 | case NUM_INT: | 
| 459 | case NUM_LONG: | 
| 460 | { | 
| 461 | ival=intConst(_t); | 
| 462 | _t = _retTree; | 
| 463 | #line 55 "MDTreeParser.g" | 
| 464 | blockStack.top()->assign(id->getText(), ival); | 
| 465 | #line 466 "MDTreeParser.cpp" | 
| 466 | break; | 
| 467 | } | 
| 468 | case NUM_FLOAT: | 
| 469 | case NUM_DOUBLE: | 
| 470 | { | 
| 471 | dval=floatConst(_t); | 
| 472 | _t = _retTree; | 
| 473 | #line 56 "MDTreeParser.g" | 
| 474 | blockStack.top()->assign(id->getText(), dval); | 
| 475 | #line 476 "MDTreeParser.cpp" | 
| 476 | break; | 
| 477 | } | 
| 478 | case ID: | 
| 479 | { | 
| 480 | str1 = _t; | 
| 481 | match(_t,ID); | 
| 482 | _t = _t->getNextSibling(); | 
| 483 | #line 57 "MDTreeParser.g" | 
| 484 | blockStack.top()->assign(id->getText(), str1->getText()); | 
| 485 | #line 486 "MDTreeParser.cpp" | 
| 486 | break; | 
| 487 | } | 
| 488 | case StringLiteral: | 
| 489 | { | 
| 490 | str2 = _t; | 
| 491 | match(_t,StringLiteral); | 
| 492 | _t = _t->getNextSibling(); | 
| 493 | #line 58 "MDTreeParser.g" | 
| 494 | std::string s =  str2->getText(); | 
| 495 | s = s.substr(1, s.length()-2); | 
| 496 | blockStack.top()->assign(id->getText(),s); | 
| 497 |  | 
| 498 | #line 499 "MDTreeParser.cpp" | 
| 499 | break; | 
| 500 | } | 
| 501 | default: | 
| 502 | { | 
| 503 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 504 | } | 
| 505 | } | 
| 506 | } | 
| 507 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 508 | reportError(ex); | 
| 509 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 510 | _t = _t->getNextSibling(); | 
| 511 | } | 
| 512 | _retTree = _t; | 
| 513 | } | 
| 514 |  | 
| 515 | int  MDTreeParser::intConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 516 | #line 286 "MDTreeParser.g" | 
| 517 | int ival; | 
| 518 | #line 519 "MDTreeParser.cpp" | 
| 519 | ANTLR_USE_NAMESPACE(antlr)RefAST intConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 520 | ANTLR_USE_NAMESPACE(antlr)RefAST i1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 521 | ANTLR_USE_NAMESPACE(antlr)RefAST i2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 522 |  | 
| 523 | try {      // for error handling | 
| 524 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 525 | _t = ASTNULL; | 
| 526 | switch ( _t->getType()) { | 
| 527 | case NUM_INT: | 
| 528 | { | 
| 529 | i1 = _t; | 
| 530 | match(_t,NUM_INT); | 
| 531 | _t = _t->getNextSibling(); | 
| 532 | #line 287 "MDTreeParser.g" | 
| 533 | ival = lexi_cast<int>(i1->getText()); | 
| 534 | #line 535 "MDTreeParser.cpp" | 
| 535 | break; | 
| 536 | } | 
| 537 | case NUM_LONG: | 
| 538 | { | 
| 539 | i2 = _t; | 
| 540 | match(_t,NUM_LONG); | 
| 541 | _t = _t->getNextSibling(); | 
| 542 | #line 288 "MDTreeParser.g" | 
| 543 | ival = lexi_cast<int>(i2->getText()); | 
| 544 | #line 545 "MDTreeParser.cpp" | 
| 545 | break; | 
| 546 | } | 
| 547 | default: | 
| 548 | { | 
| 549 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 550 | } | 
| 551 | } | 
| 552 | } | 
| 553 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 554 | reportError(ex); | 
| 555 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 556 | _t = _t->getNextSibling(); | 
| 557 | } | 
| 558 | _retTree = _t; | 
| 559 | return ival; | 
| 560 | } | 
| 561 |  | 
| 562 | RealType  MDTreeParser::floatConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 563 | #line 300 "MDTreeParser.g" | 
| 564 | RealType dval; | 
| 565 | #line 566 "MDTreeParser.cpp" | 
| 566 | ANTLR_USE_NAMESPACE(antlr)RefAST floatConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 567 | ANTLR_USE_NAMESPACE(antlr)RefAST d1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 568 | ANTLR_USE_NAMESPACE(antlr)RefAST d2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 569 |  | 
| 570 | try {      // for error handling | 
| 571 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 572 | _t = ASTNULL; | 
| 573 | switch ( _t->getType()) { | 
| 574 | case NUM_FLOAT: | 
| 575 | { | 
| 576 | d1 = _t; | 
| 577 | match(_t,NUM_FLOAT); | 
| 578 | _t = _t->getNextSibling(); | 
| 579 | #line 301 "MDTreeParser.g" | 
| 580 | dval = lexi_cast<RealType>(d1->getText()); | 
| 581 | #line 582 "MDTreeParser.cpp" | 
| 582 | break; | 
| 583 | } | 
| 584 | case NUM_DOUBLE: | 
| 585 | { | 
| 586 | d2 = _t; | 
| 587 | match(_t,NUM_DOUBLE); | 
| 588 | _t = _t->getNextSibling(); | 
| 589 | #line 302 "MDTreeParser.g" | 
| 590 | dval = lexi_cast<RealType>(d2->getText()); | 
| 591 | #line 592 "MDTreeParser.cpp" | 
| 592 | break; | 
| 593 | } | 
| 594 | default: | 
| 595 | { | 
| 596 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 597 | } | 
| 598 | } | 
| 599 | } | 
| 600 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 601 | reportError(ex); | 
| 602 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 603 | _t = _t->getNextSibling(); | 
| 604 | } | 
| 605 | _retTree = _t; | 
| 606 | return dval; | 
| 607 | } | 
| 608 |  | 
| 609 | void MDTreeParser::moleculestatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 610 | ANTLR_USE_NAMESPACE(antlr)RefAST moleculestatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 611 |  | 
| 612 | try {      // for error handling | 
| 613 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 614 | _t = ASTNULL; | 
| 615 | switch ( _t->getType()) { | 
| 616 | case ASSIGNEQUAL: | 
| 617 | { | 
| 618 | assignment(_t); | 
| 619 | _t = _retTree; | 
| 620 | break; | 
| 621 | } | 
| 622 | case ATOM: | 
| 623 | { | 
| 624 | atomblock(_t); | 
| 625 | _t = _retTree; | 
| 626 | break; | 
| 627 | } | 
| 628 | case BOND: | 
| 629 | { | 
| 630 | bondblock(_t); | 
| 631 | _t = _retTree; | 
| 632 | break; | 
| 633 | } | 
| 634 | case BEND: | 
| 635 | { | 
| 636 | bendblock(_t); | 
| 637 | _t = _retTree; | 
| 638 | break; | 
| 639 | } | 
| 640 | case TORSION: | 
| 641 | { | 
| 642 | torsionblock(_t); | 
| 643 | _t = _retTree; | 
| 644 | break; | 
| 645 | } | 
| 646 | case INVERSION: | 
| 647 | { | 
| 648 | inversionblock(_t); | 
| 649 | _t = _retTree; | 
| 650 | break; | 
| 651 | } | 
| 652 | case RIGIDBODY: | 
| 653 | { | 
| 654 | rigidbodyblock(_t); | 
| 655 | _t = _retTree; | 
| 656 | break; | 
| 657 | } | 
| 658 | case CUTOFFGROUP: | 
| 659 | { | 
| 660 | cutoffgroupblock(_t); | 
| 661 | _t = _retTree; | 
| 662 | break; | 
| 663 | } | 
| 664 | case FRAGMENT: | 
| 665 | { | 
| 666 | fragmentblock(_t); | 
| 667 | _t = _retTree; | 
| 668 | break; | 
| 669 | } | 
| 670 | default: | 
| 671 | { | 
| 672 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 673 | } | 
| 674 | } | 
| 675 | } | 
| 676 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 677 | reportError(ex); | 
| 678 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 679 | _t = _t->getNextSibling(); | 
| 680 | } | 
| 681 | _retTree = _t; | 
| 682 | } | 
| 683 |  | 
| 684 | void MDTreeParser::atomblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 685 | ANTLR_USE_NAMESPACE(antlr)RefAST atomblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 686 | #line 112 "MDTreeParser.g" | 
| 687 |  | 
| 688 | int index; | 
| 689 |  | 
| 690 | #line 691 "MDTreeParser.cpp" | 
| 691 |  | 
| 692 | try {      // for error handling | 
| 693 | ANTLR_USE_NAMESPACE(antlr)RefAST __t38 = _t; | 
| 694 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp16_AST_in = _t; | 
| 695 | match(_t,ATOM); | 
| 696 | _t = _t->getFirstChild(); | 
| 697 | index=intConst(_t); | 
| 698 | _t = _retTree; | 
| 699 | #line 116 "MDTreeParser.g" | 
| 700 | AtomStamp* currAtomStamp = new AtomStamp(index); blockStack.push(currAtomStamp); | 
| 701 | #line 702 "MDTreeParser.cpp" | 
| 702 | { // ( ... )* | 
| 703 | for (;;) { | 
| 704 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 705 | _t = ASTNULL; | 
| 706 | if ((_t->getType() == POSITION || _t->getType() == ORIENTATION || _t->getType() == ASSIGNEQUAL)) { | 
| 707 | atomstatement(_t); | 
| 708 | _t = _retTree; | 
| 709 | } | 
| 710 | else { | 
| 711 | goto _loop40; | 
| 712 | } | 
| 713 |  | 
| 714 | } | 
| 715 | _loop40:; | 
| 716 | } // ( ... )* | 
| 717 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp17_AST_in = _t; | 
| 718 | match(_t,ENDBLOCK); | 
| 719 | _t = _t->getNextSibling(); | 
| 720 | _t = __t38; | 
| 721 | _t = _t->getNextSibling(); | 
| 722 | #line 118 "MDTreeParser.g" | 
| 723 |  | 
| 724 | blockStack.top()->validate(); | 
| 725 | blockStack.pop(); | 
| 726 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 727 | currMoleculeStamp->addAtomStamp(currAtomStamp); | 
| 728 |  | 
| 729 | #line 730 "MDTreeParser.cpp" | 
| 730 | } | 
| 731 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 732 | reportError(ex); | 
| 733 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 734 | _t = _t->getNextSibling(); | 
| 735 | } | 
| 736 | _retTree = _t; | 
| 737 | } | 
| 738 |  | 
| 739 | void MDTreeParser::bondblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 740 | ANTLR_USE_NAMESPACE(antlr)RefAST bondblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 741 |  | 
| 742 | try {      // for error handling | 
| 743 | ANTLR_USE_NAMESPACE(antlr)RefAST __t45 = _t; | 
| 744 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp18_AST_in = _t; | 
| 745 | match(_t,BOND); | 
| 746 | _t = _t->getFirstChild(); | 
| 747 | #line 138 "MDTreeParser.g" | 
| 748 | BondStamp* currBondStamp = new BondStamp(); blockStack.push(currBondStamp); | 
| 749 | #line 750 "MDTreeParser.cpp" | 
| 750 | { // ( ... )* | 
| 751 | for (;;) { | 
| 752 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 753 | _t = ASTNULL; | 
| 754 | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 755 | bondstatement(_t); | 
| 756 | _t = _retTree; | 
| 757 | } | 
| 758 | else { | 
| 759 | goto _loop47; | 
| 760 | } | 
| 761 |  | 
| 762 | } | 
| 763 | _loop47:; | 
| 764 | } // ( ... )* | 
| 765 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp19_AST_in = _t; | 
| 766 | match(_t,ENDBLOCK); | 
| 767 | _t = _t->getNextSibling(); | 
| 768 | _t = __t45; | 
| 769 | _t = _t->getNextSibling(); | 
| 770 | #line 140 "MDTreeParser.g" | 
| 771 |  | 
| 772 | blockStack.pop(); | 
| 773 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 774 | currMoleculeStamp->addBondStamp(currBondStamp); | 
| 775 |  | 
| 776 | #line 777 "MDTreeParser.cpp" | 
| 777 | } | 
| 778 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 779 | reportError(ex); | 
| 780 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 781 | _t = _t->getNextSibling(); | 
| 782 | } | 
| 783 | _retTree = _t; | 
| 784 | } | 
| 785 |  | 
| 786 | void MDTreeParser::bendblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 787 | ANTLR_USE_NAMESPACE(antlr)RefAST bendblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 788 |  | 
| 789 | try {      // for error handling | 
| 790 | ANTLR_USE_NAMESPACE(antlr)RefAST __t51 = _t; | 
| 791 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; | 
| 792 | match(_t,BEND); | 
| 793 | _t = _t->getFirstChild(); | 
| 794 | #line 156 "MDTreeParser.g" | 
| 795 | BendStamp* currBendStamp = new BendStamp(); blockStack.push(currBendStamp); | 
| 796 | #line 797 "MDTreeParser.cpp" | 
| 797 | { // ( ... )* | 
| 798 | for (;;) { | 
| 799 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 800 | _t = ASTNULL; | 
| 801 | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 802 | bendstatement(_t); | 
| 803 | _t = _retTree; | 
| 804 | } | 
| 805 | else { | 
| 806 | goto _loop53; | 
| 807 | } | 
| 808 |  | 
| 809 | } | 
| 810 | _loop53:; | 
| 811 | } // ( ... )* | 
| 812 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; | 
| 813 | match(_t,ENDBLOCK); | 
| 814 | _t = _t->getNextSibling(); | 
| 815 | _t = __t51; | 
| 816 | _t = _t->getNextSibling(); | 
| 817 | #line 158 "MDTreeParser.g" | 
| 818 |  | 
| 819 | blockStack.top()->validate(); | 
| 820 | blockStack.pop(); | 
| 821 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 822 | currMoleculeStamp->addBendStamp(currBendStamp); | 
| 823 |  | 
| 824 | #line 825 "MDTreeParser.cpp" | 
| 825 | } | 
| 826 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 827 | reportError(ex); | 
| 828 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 829 | _t = _t->getNextSibling(); | 
| 830 | } | 
| 831 | _retTree = _t; | 
| 832 | } | 
| 833 |  | 
| 834 | void MDTreeParser::torsionblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 835 | ANTLR_USE_NAMESPACE(antlr)RefAST torsionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 836 |  | 
| 837 | try {      // for error handling | 
| 838 | ANTLR_USE_NAMESPACE(antlr)RefAST __t57 = _t; | 
| 839 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; | 
| 840 | match(_t,TORSION); | 
| 841 | _t = _t->getFirstChild(); | 
| 842 | #line 175 "MDTreeParser.g" | 
| 843 | TorsionStamp* currTorsionStamp = new TorsionStamp(); blockStack.push(currTorsionStamp); | 
| 844 | #line 845 "MDTreeParser.cpp" | 
| 845 | { // ( ... )* | 
| 846 | for (;;) { | 
| 847 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 848 | _t = ASTNULL; | 
| 849 | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 850 | torsionstatement(_t); | 
| 851 | _t = _retTree; | 
| 852 | } | 
| 853 | else { | 
| 854 | goto _loop59; | 
| 855 | } | 
| 856 |  | 
| 857 | } | 
| 858 | _loop59:; | 
| 859 | } // ( ... )* | 
| 860 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; | 
| 861 | match(_t,ENDBLOCK); | 
| 862 | _t = _t->getNextSibling(); | 
| 863 | _t = __t57; | 
| 864 | _t = _t->getNextSibling(); | 
| 865 | #line 177 "MDTreeParser.g" | 
| 866 |  | 
| 867 | blockStack.top()->validate(); | 
| 868 | blockStack.pop(); | 
| 869 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 870 | currMoleculeStamp->addTorsionStamp(currTorsionStamp); | 
| 871 |  | 
| 872 | #line 873 "MDTreeParser.cpp" | 
| 873 | } | 
| 874 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 875 | reportError(ex); | 
| 876 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 877 | _t = _t->getNextSibling(); | 
| 878 | } | 
| 879 | _retTree = _t; | 
| 880 | } | 
| 881 |  | 
| 882 | void MDTreeParser::inversionblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 883 | ANTLR_USE_NAMESPACE(antlr)RefAST inversionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 884 |  | 
| 885 | try {      // for error handling | 
| 886 | ANTLR_USE_NAMESPACE(antlr)RefAST __t63 = _t; | 
| 887 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; | 
| 888 | match(_t,INVERSION); | 
| 889 | _t = _t->getFirstChild(); | 
| 890 | #line 194 "MDTreeParser.g" | 
| 891 | InversionStamp* currInversionStamp = new InversionStamp(); blockStack.push(currInversionStamp); | 
| 892 | #line 893 "MDTreeParser.cpp" | 
| 893 | { // ( ... )* | 
| 894 | for (;;) { | 
| 895 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 896 | _t = ASTNULL; | 
| 897 | if ((_t->getType() == CENTER || _t->getType() == ASSIGNEQUAL)) { | 
| 898 | inversionstatement(_t); | 
| 899 | _t = _retTree; | 
| 900 | } | 
| 901 | else { | 
| 902 | goto _loop65; | 
| 903 | } | 
| 904 |  | 
| 905 | } | 
| 906 | _loop65:; | 
| 907 | } // ( ... )* | 
| 908 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; | 
| 909 | match(_t,ENDBLOCK); | 
| 910 | _t = _t->getNextSibling(); | 
| 911 | _t = __t63; | 
| 912 | _t = _t->getNextSibling(); | 
| 913 | #line 196 "MDTreeParser.g" | 
| 914 |  | 
| 915 | blockStack.top()->validate(); | 
| 916 | blockStack.pop(); | 
| 917 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 918 | currMoleculeStamp->addInversionStamp(currInversionStamp); | 
| 919 |  | 
| 920 | #line 921 "MDTreeParser.cpp" | 
| 921 | } | 
| 922 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 923 | reportError(ex); | 
| 924 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 925 | _t = _t->getNextSibling(); | 
| 926 | } | 
| 927 | _retTree = _t; | 
| 928 | } | 
| 929 |  | 
| 930 | void MDTreeParser::rigidbodyblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 931 | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodyblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 932 | #line 213 "MDTreeParser.g" | 
| 933 |  | 
| 934 | int index; | 
| 935 |  | 
| 936 | #line 937 "MDTreeParser.cpp" | 
| 937 |  | 
| 938 | try {      // for error handling | 
| 939 | ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; | 
| 940 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; | 
| 941 | match(_t,RIGIDBODY); | 
| 942 | _t = _t->getFirstChild(); | 
| 943 | index=intConst(_t); | 
| 944 | _t = _retTree; | 
| 945 | #line 217 "MDTreeParser.g" | 
| 946 | RigidBodyStamp* currRigidBodyStamp = new RigidBodyStamp(index); blockStack.push(currRigidBodyStamp); | 
| 947 | #line 948 "MDTreeParser.cpp" | 
| 948 | { // ( ... )* | 
| 949 | for (;;) { | 
| 950 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 951 | _t = ASTNULL; | 
| 952 | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 953 | rigidbodystatement(_t); | 
| 954 | _t = _retTree; | 
| 955 | } | 
| 956 | else { | 
| 957 | goto _loop71; | 
| 958 | } | 
| 959 |  | 
| 960 | } | 
| 961 | _loop71:; | 
| 962 | } // ( ... )* | 
| 963 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; | 
| 964 | match(_t,ENDBLOCK); | 
| 965 | _t = _t->getNextSibling(); | 
| 966 | _t = __t69; | 
| 967 | _t = _t->getNextSibling(); | 
| 968 | #line 219 "MDTreeParser.g" | 
| 969 |  | 
| 970 | blockStack.top()->validate(); | 
| 971 | blockStack.pop(); | 
| 972 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 973 | currMoleculeStamp->addRigidBodyStamp(currRigidBodyStamp); | 
| 974 |  | 
| 975 | #line 976 "MDTreeParser.cpp" | 
| 976 | } | 
| 977 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 978 | reportError(ex); | 
| 979 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 980 | _t = _t->getNextSibling(); | 
| 981 | } | 
| 982 | _retTree = _t; | 
| 983 | } | 
| 984 |  | 
| 985 | void MDTreeParser::cutoffgroupblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 986 | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 987 |  | 
| 988 | try {      // for error handling | 
| 989 | ANTLR_USE_NAMESPACE(antlr)RefAST __t75 = _t; | 
| 990 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; | 
| 991 | match(_t,CUTOFFGROUP); | 
| 992 | _t = _t->getFirstChild(); | 
| 993 | #line 236 "MDTreeParser.g" | 
| 994 | CutoffGroupStamp* currCutoffGroupStamp = new CutoffGroupStamp(); blockStack.push(currCutoffGroupStamp); | 
| 995 | #line 996 "MDTreeParser.cpp" | 
| 996 | { // ( ... )* | 
| 997 | for (;;) { | 
| 998 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 999 | _t = ASTNULL; | 
| 1000 | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 1001 | cutoffgroupstatement(_t); | 
| 1002 | _t = _retTree; | 
| 1003 | } | 
| 1004 | else { | 
| 1005 | goto _loop77; | 
| 1006 | } | 
| 1007 |  | 
| 1008 | } | 
| 1009 | _loop77:; | 
| 1010 | } // ( ... )* | 
| 1011 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp29_AST_in = _t; | 
| 1012 | match(_t,ENDBLOCK); | 
| 1013 | _t = _t->getNextSibling(); | 
| 1014 | _t = __t75; | 
| 1015 | _t = _t->getNextSibling(); | 
| 1016 | #line 238 "MDTreeParser.g" | 
| 1017 |  | 
| 1018 | blockStack.top()->validate(); | 
| 1019 | blockStack.pop(); | 
| 1020 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1021 | currMoleculeStamp->addCutoffGroupStamp(currCutoffGroupStamp); | 
| 1022 |  | 
| 1023 | #line 1024 "MDTreeParser.cpp" | 
| 1024 | } | 
| 1025 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1026 | reportError(ex); | 
| 1027 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1028 | _t = _t->getNextSibling(); | 
| 1029 | } | 
| 1030 | _retTree = _t; | 
| 1031 | } | 
| 1032 |  | 
| 1033 | void MDTreeParser::fragmentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1034 | ANTLR_USE_NAMESPACE(antlr)RefAST fragmentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1035 | #line 255 "MDTreeParser.g" | 
| 1036 | int ival; | 
| 1037 | #line 1038 "MDTreeParser.cpp" | 
| 1038 |  | 
| 1039 | try {      // for error handling | 
| 1040 | ANTLR_USE_NAMESPACE(antlr)RefAST __t81 = _t; | 
| 1041 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp30_AST_in = _t; | 
| 1042 | match(_t,FRAGMENT); | 
| 1043 | _t = _t->getFirstChild(); | 
| 1044 | ival=intConst(_t); | 
| 1045 | _t = _retTree; | 
| 1046 | #line 256 "MDTreeParser.g" | 
| 1047 | FragmentStamp* currFragmentStamp = new FragmentStamp(ival); blockStack.push(currFragmentStamp); | 
| 1048 | #line 1049 "MDTreeParser.cpp" | 
| 1049 | { // ( ... )* | 
| 1050 | for (;;) { | 
| 1051 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1052 | _t = ASTNULL; | 
| 1053 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 1054 | fragmentstatement(_t); | 
| 1055 | _t = _retTree; | 
| 1056 | } | 
| 1057 | else { | 
| 1058 | goto _loop83; | 
| 1059 | } | 
| 1060 |  | 
| 1061 | } | 
| 1062 | _loop83:; | 
| 1063 | } // ( ... )* | 
| 1064 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp31_AST_in = _t; | 
| 1065 | match(_t,ENDBLOCK); | 
| 1066 | _t = _t->getNextSibling(); | 
| 1067 | _t = __t81; | 
| 1068 | _t = _t->getNextSibling(); | 
| 1069 | #line 258 "MDTreeParser.g" | 
| 1070 |  | 
| 1071 | blockStack.top()->validate(); | 
| 1072 | blockStack.pop(); | 
| 1073 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1074 | currMoleculeStamp->addFragmentStamp(currFragmentStamp); | 
| 1075 |  | 
| 1076 | #line 1077 "MDTreeParser.cpp" | 
| 1077 | } | 
| 1078 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1079 | reportError(ex); | 
| 1080 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1081 | _t = _t->getNextSibling(); | 
| 1082 | } | 
| 1083 | _retTree = _t; | 
| 1084 | } | 
| 1085 |  | 
| 1086 | void MDTreeParser::atomstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1087 | ANTLR_USE_NAMESPACE(antlr)RefAST atomstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1088 | #line 126 "MDTreeParser.g" | 
| 1089 |  | 
| 1090 | vector<RealType> dvec; | 
| 1091 | AtomStamp* currAtomStamp =  static_cast<AtomStamp*>(blockStack.top()); | 
| 1092 |  | 
| 1093 |  | 
| 1094 | #line 1095 "MDTreeParser.cpp" | 
| 1095 |  | 
| 1096 | try {      // for error handling | 
| 1097 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1098 | _t = ASTNULL; | 
| 1099 | switch ( _t->getType()) { | 
| 1100 | case ASSIGNEQUAL: | 
| 1101 | { | 
| 1102 | assignment(_t); | 
| 1103 | _t = _retTree; | 
| 1104 | break; | 
| 1105 | } | 
| 1106 | case POSITION: | 
| 1107 | { | 
| 1108 | ANTLR_USE_NAMESPACE(antlr)RefAST __t42 = _t; | 
| 1109 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp32_AST_in = _t; | 
| 1110 | match(_t,POSITION); | 
| 1111 | _t = _t->getFirstChild(); | 
| 1112 | dvec=doubleNumberTuple(_t); | 
| 1113 | _t = _retTree; | 
| 1114 | _t = __t42; | 
| 1115 | _t = _t->getNextSibling(); | 
| 1116 | #line 133 "MDTreeParser.g" | 
| 1117 | currAtomStamp->setPosition(dvec); | 
| 1118 | #line 1119 "MDTreeParser.cpp" | 
| 1119 | break; | 
| 1120 | } | 
| 1121 | case ORIENTATION: | 
| 1122 | { | 
| 1123 | ANTLR_USE_NAMESPACE(antlr)RefAST __t43 = _t; | 
| 1124 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp33_AST_in = _t; | 
| 1125 | match(_t,ORIENTATION); | 
| 1126 | _t = _t->getFirstChild(); | 
| 1127 | dvec=doubleNumberTuple(_t); | 
| 1128 | _t = _retTree; | 
| 1129 | _t = __t43; | 
| 1130 | _t = _t->getNextSibling(); | 
| 1131 | #line 134 "MDTreeParser.g" | 
| 1132 | currAtomStamp->setOrientation(dvec); | 
| 1133 | #line 1134 "MDTreeParser.cpp" | 
| 1134 | break; | 
| 1135 | } | 
| 1136 | default: | 
| 1137 | { | 
| 1138 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1139 | } | 
| 1140 | } | 
| 1141 | } | 
| 1142 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1143 | reportError(ex); | 
| 1144 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1145 | _t = _t->getNextSibling(); | 
| 1146 | } | 
| 1147 | _retTree = _t; | 
| 1148 | } | 
| 1149 |  | 
| 1150 | vector<RealType>  MDTreeParser::doubleNumberTuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1151 | #line 271 "MDTreeParser.g" | 
| 1152 | vector<RealType> dvec; | 
| 1153 | #line 1154 "MDTreeParser.cpp" | 
| 1154 | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumberTuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1155 | #line 271 "MDTreeParser.g" | 
| 1156 |  | 
| 1157 | RealType dval; | 
| 1158 |  | 
| 1159 | #line 1160 "MDTreeParser.cpp" | 
| 1160 |  | 
| 1161 | try {      // for error handling | 
| 1162 | { // ( ... )+ | 
| 1163 | int _cnt87=0; | 
| 1164 | for (;;) { | 
| 1165 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1166 | _t = ASTNULL; | 
| 1167 | if (((_t->getType() >= NUM_INT && _t->getType() <= NUM_DOUBLE))) { | 
| 1168 | dval=doubleNumber(_t); | 
| 1169 | _t = _retTree; | 
| 1170 | #line 275 "MDTreeParser.g" | 
| 1171 | dvec.push_back(dval); | 
| 1172 | #line 1173 "MDTreeParser.cpp" | 
| 1173 | } | 
| 1174 | else { | 
| 1175 | if ( _cnt87>=1 ) { goto _loop87; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1176 | } | 
| 1177 |  | 
| 1178 | _cnt87++; | 
| 1179 | } | 
| 1180 | _loop87:; | 
| 1181 | }  // ( ... )+ | 
| 1182 | } | 
| 1183 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1184 | reportError(ex); | 
| 1185 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1186 | _t = _t->getNextSibling(); | 
| 1187 | } | 
| 1188 | _retTree = _t; | 
| 1189 | return dvec; | 
| 1190 | } | 
| 1191 |  | 
| 1192 | void MDTreeParser::bondstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1193 | ANTLR_USE_NAMESPACE(antlr)RefAST bondstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1194 | #line 147 "MDTreeParser.g" | 
| 1195 |  | 
| 1196 | vector<int> ivec; | 
| 1197 | BondStamp* currBondStamp = static_cast<BondStamp*>(blockStack.top()); | 
| 1198 |  | 
| 1199 | #line 1200 "MDTreeParser.cpp" | 
| 1200 |  | 
| 1201 | try {      // for error handling | 
| 1202 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1203 | _t = ASTNULL; | 
| 1204 | switch ( _t->getType()) { | 
| 1205 | case ASSIGNEQUAL: | 
| 1206 | { | 
| 1207 | assignment(_t); | 
| 1208 | _t = _retTree; | 
| 1209 | break; | 
| 1210 | } | 
| 1211 | case MEMBERS: | 
| 1212 | { | 
| 1213 | ANTLR_USE_NAMESPACE(antlr)RefAST __t49 = _t; | 
| 1214 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp34_AST_in = _t; | 
| 1215 | match(_t,MEMBERS); | 
| 1216 | _t = _t->getFirstChild(); | 
| 1217 | ivec=inttuple(_t); | 
| 1218 | _t = _retTree; | 
| 1219 | _t = __t49; | 
| 1220 | _t = _t->getNextSibling(); | 
| 1221 | #line 153 "MDTreeParser.g" | 
| 1222 | currBondStamp->setMembers(ivec); | 
| 1223 | #line 1224 "MDTreeParser.cpp" | 
| 1224 | break; | 
| 1225 | } | 
| 1226 | default: | 
| 1227 | { | 
| 1228 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1229 | } | 
| 1230 | } | 
| 1231 | } | 
| 1232 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1233 | reportError(ex); | 
| 1234 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1235 | _t = _t->getNextSibling(); | 
| 1236 | } | 
| 1237 | _retTree = _t; | 
| 1238 | } | 
| 1239 |  | 
| 1240 | vector<int>  MDTreeParser::inttuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1241 | #line 278 "MDTreeParser.g" | 
| 1242 | vector<int> ivec; | 
| 1243 | #line 1244 "MDTreeParser.cpp" | 
| 1244 | ANTLR_USE_NAMESPACE(antlr)RefAST inttuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1245 | #line 278 "MDTreeParser.g" | 
| 1246 |  | 
| 1247 | int ival; | 
| 1248 |  | 
| 1249 | #line 1250 "MDTreeParser.cpp" | 
| 1250 |  | 
| 1251 | try {      // for error handling | 
| 1252 | { // ( ... )+ | 
| 1253 | int _cnt90=0; | 
| 1254 | for (;;) { | 
| 1255 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1256 | _t = ASTNULL; | 
| 1257 | if ((_t->getType() == NUM_INT || _t->getType() == NUM_LONG)) { | 
| 1258 | ival=intConst(_t); | 
| 1259 | _t = _retTree; | 
| 1260 | #line 282 "MDTreeParser.g" | 
| 1261 | ivec.push_back(ival); | 
| 1262 | #line 1263 "MDTreeParser.cpp" | 
| 1263 | } | 
| 1264 | else { | 
| 1265 | if ( _cnt90>=1 ) { goto _loop90; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1266 | } | 
| 1267 |  | 
| 1268 | _cnt90++; | 
| 1269 | } | 
| 1270 | _loop90:; | 
| 1271 | }  // ( ... )+ | 
| 1272 | } | 
| 1273 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1274 | reportError(ex); | 
| 1275 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1276 | _t = _t->getNextSibling(); | 
| 1277 | } | 
| 1278 | _retTree = _t; | 
| 1279 | return ivec; | 
| 1280 | } | 
| 1281 |  | 
| 1282 | void MDTreeParser::bendstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1283 | ANTLR_USE_NAMESPACE(antlr)RefAST bendstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1284 | #line 166 "MDTreeParser.g" | 
| 1285 |  | 
| 1286 | vector<int> ivec; | 
| 1287 | BendStamp* currBendStamp = static_cast<BendStamp*>(blockStack.top()); | 
| 1288 |  | 
| 1289 | #line 1290 "MDTreeParser.cpp" | 
| 1290 |  | 
| 1291 | try {      // for error handling | 
| 1292 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1293 | _t = ASTNULL; | 
| 1294 | switch ( _t->getType()) { | 
| 1295 | case ASSIGNEQUAL: | 
| 1296 | { | 
| 1297 | assignment(_t); | 
| 1298 | _t = _retTree; | 
| 1299 | break; | 
| 1300 | } | 
| 1301 | case MEMBERS: | 
| 1302 | { | 
| 1303 | ANTLR_USE_NAMESPACE(antlr)RefAST __t55 = _t; | 
| 1304 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp35_AST_in = _t; | 
| 1305 | match(_t,MEMBERS); | 
| 1306 | _t = _t->getFirstChild(); | 
| 1307 | ivec=inttuple(_t); | 
| 1308 | _t = _retTree; | 
| 1309 | _t = __t55; | 
| 1310 | _t = _t->getNextSibling(); | 
| 1311 | #line 172 "MDTreeParser.g" | 
| 1312 | currBendStamp->setMembers(ivec); | 
| 1313 | #line 1314 "MDTreeParser.cpp" | 
| 1314 | break; | 
| 1315 | } | 
| 1316 | default: | 
| 1317 | { | 
| 1318 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1319 | } | 
| 1320 | } | 
| 1321 | } | 
| 1322 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1323 | reportError(ex); | 
| 1324 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1325 | _t = _t->getNextSibling(); | 
| 1326 | } | 
| 1327 | _retTree = _t; | 
| 1328 | } | 
| 1329 |  | 
| 1330 | void MDTreeParser::torsionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1331 | ANTLR_USE_NAMESPACE(antlr)RefAST torsionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1332 | #line 185 "MDTreeParser.g" | 
| 1333 |  | 
| 1334 | vector<int> ivec; | 
| 1335 | TorsionStamp* currTorsionStamp = static_cast<TorsionStamp*>(blockStack.top()); | 
| 1336 |  | 
| 1337 | #line 1338 "MDTreeParser.cpp" | 
| 1338 |  | 
| 1339 | try {      // for error handling | 
| 1340 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1341 | _t = ASTNULL; | 
| 1342 | switch ( _t->getType()) { | 
| 1343 | case ASSIGNEQUAL: | 
| 1344 | { | 
| 1345 | assignment(_t); | 
| 1346 | _t = _retTree; | 
| 1347 | break; | 
| 1348 | } | 
| 1349 | case MEMBERS: | 
| 1350 | { | 
| 1351 | ANTLR_USE_NAMESPACE(antlr)RefAST __t61 = _t; | 
| 1352 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp36_AST_in = _t; | 
| 1353 | match(_t,MEMBERS); | 
| 1354 | _t = _t->getFirstChild(); | 
| 1355 | ivec=inttuple(_t); | 
| 1356 | _t = _retTree; | 
| 1357 | _t = __t61; | 
| 1358 | _t = _t->getNextSibling(); | 
| 1359 | #line 191 "MDTreeParser.g" | 
| 1360 | currTorsionStamp->setMembers(ivec); | 
| 1361 | #line 1362 "MDTreeParser.cpp" | 
| 1362 | break; | 
| 1363 | } | 
| 1364 | default: | 
| 1365 | { | 
| 1366 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1367 | } | 
| 1368 | } | 
| 1369 | } | 
| 1370 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1371 | reportError(ex); | 
| 1372 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1373 | _t = _t->getNextSibling(); | 
| 1374 | } | 
| 1375 | _retTree = _t; | 
| 1376 | } | 
| 1377 |  | 
| 1378 | void MDTreeParser::inversionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1379 | ANTLR_USE_NAMESPACE(antlr)RefAST inversionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1380 | #line 204 "MDTreeParser.g" | 
| 1381 |  | 
| 1382 | int icent; | 
| 1383 | InversionStamp* currInversionStamp = static_cast<InversionStamp*>(blockStack.top()); | 
| 1384 |  | 
| 1385 | #line 1386 "MDTreeParser.cpp" | 
| 1386 |  | 
| 1387 | try {      // for error handling | 
| 1388 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1389 | _t = ASTNULL; | 
| 1390 | switch ( _t->getType()) { | 
| 1391 | case ASSIGNEQUAL: | 
| 1392 | { | 
| 1393 | assignment(_t); | 
| 1394 | _t = _retTree; | 
| 1395 | break; | 
| 1396 | } | 
| 1397 | case CENTER: | 
| 1398 | { | 
| 1399 | ANTLR_USE_NAMESPACE(antlr)RefAST __t67 = _t; | 
| 1400 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp37_AST_in = _t; | 
| 1401 | match(_t,CENTER); | 
| 1402 | _t = _t->getFirstChild(); | 
| 1403 | icent=intConst(_t); | 
| 1404 | _t = _retTree; | 
| 1405 | _t = __t67; | 
| 1406 | _t = _t->getNextSibling(); | 
| 1407 | #line 210 "MDTreeParser.g" | 
| 1408 | currInversionStamp->setCenter(icent); | 
| 1409 | #line 1410 "MDTreeParser.cpp" | 
| 1410 | break; | 
| 1411 | } | 
| 1412 | default: | 
| 1413 | { | 
| 1414 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1415 | } | 
| 1416 | } | 
| 1417 | } | 
| 1418 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1419 | reportError(ex); | 
| 1420 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1421 | _t = _t->getNextSibling(); | 
| 1422 | } | 
| 1423 | _retTree = _t; | 
| 1424 | } | 
| 1425 |  | 
| 1426 | void MDTreeParser::rigidbodystatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1427 | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodystatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1428 | #line 227 "MDTreeParser.g" | 
| 1429 |  | 
| 1430 | vector<int> ivec; | 
| 1431 | RigidBodyStamp* currRigidBodyStamp = static_cast<RigidBodyStamp*>(blockStack.top()); | 
| 1432 |  | 
| 1433 | #line 1434 "MDTreeParser.cpp" | 
| 1434 |  | 
| 1435 | try {      // for error handling | 
| 1436 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1437 | _t = ASTNULL; | 
| 1438 | switch ( _t->getType()) { | 
| 1439 | case ASSIGNEQUAL: | 
| 1440 | { | 
| 1441 | assignment(_t); | 
| 1442 | _t = _retTree; | 
| 1443 | break; | 
| 1444 | } | 
| 1445 | case MEMBERS: | 
| 1446 | { | 
| 1447 | ANTLR_USE_NAMESPACE(antlr)RefAST __t73 = _t; | 
| 1448 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp38_AST_in = _t; | 
| 1449 | match(_t,MEMBERS); | 
| 1450 | _t = _t->getFirstChild(); | 
| 1451 | ivec=inttuple(_t); | 
| 1452 | _t = _retTree; | 
| 1453 | _t = __t73; | 
| 1454 | _t = _t->getNextSibling(); | 
| 1455 | #line 233 "MDTreeParser.g" | 
| 1456 | currRigidBodyStamp->setMembers(ivec); | 
| 1457 | #line 1458 "MDTreeParser.cpp" | 
| 1458 | break; | 
| 1459 | } | 
| 1460 | default: | 
| 1461 | { | 
| 1462 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1463 | } | 
| 1464 | } | 
| 1465 | } | 
| 1466 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1467 | reportError(ex); | 
| 1468 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1469 | _t = _t->getNextSibling(); | 
| 1470 | } | 
| 1471 | _retTree = _t; | 
| 1472 | } | 
| 1473 |  | 
| 1474 | void MDTreeParser::cutoffgroupstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1475 | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1476 | #line 246 "MDTreeParser.g" | 
| 1477 |  | 
| 1478 | vector<int> ivec; | 
| 1479 | CutoffGroupStamp* currCutoffGroupStamp = static_cast<CutoffGroupStamp*>(blockStack.top()); | 
| 1480 |  | 
| 1481 | #line 1482 "MDTreeParser.cpp" | 
| 1482 |  | 
| 1483 | try {      // for error handling | 
| 1484 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1485 | _t = ASTNULL; | 
| 1486 | switch ( _t->getType()) { | 
| 1487 | case ASSIGNEQUAL: | 
| 1488 | { | 
| 1489 | assignment(_t); | 
| 1490 | _t = _retTree; | 
| 1491 | break; | 
| 1492 | } | 
| 1493 | case MEMBERS: | 
| 1494 | { | 
| 1495 | ANTLR_USE_NAMESPACE(antlr)RefAST __t79 = _t; | 
| 1496 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp39_AST_in = _t; | 
| 1497 | match(_t,MEMBERS); | 
| 1498 | _t = _t->getFirstChild(); | 
| 1499 | ivec=inttuple(_t); | 
| 1500 | _t = _retTree; | 
| 1501 | _t = __t79; | 
| 1502 | _t = _t->getNextSibling(); | 
| 1503 | #line 252 "MDTreeParser.g" | 
| 1504 | currCutoffGroupStamp->setMembers(ivec); | 
| 1505 | #line 1506 "MDTreeParser.cpp" | 
| 1506 | break; | 
| 1507 | } | 
| 1508 | default: | 
| 1509 | { | 
| 1510 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1511 | } | 
| 1512 | } | 
| 1513 | } | 
| 1514 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1515 | reportError(ex); | 
| 1516 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1517 | _t = _t->getNextSibling(); | 
| 1518 | } | 
| 1519 | _retTree = _t; | 
| 1520 | } | 
| 1521 |  | 
| 1522 | void MDTreeParser::fragmentstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1523 | ANTLR_USE_NAMESPACE(antlr)RefAST fragmentstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1524 |  | 
| 1525 | try {      // for error handling | 
| 1526 | assignment(_t); | 
| 1527 | _t = _retTree; | 
| 1528 | } | 
| 1529 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1530 | reportError(ex); | 
| 1531 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1532 | _t = _t->getNextSibling(); | 
| 1533 | } | 
| 1534 | _retTree = _t; | 
| 1535 | } | 
| 1536 |  | 
| 1537 | RealType  MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1538 | #line 292 "MDTreeParser.g" | 
| 1539 | RealType dval; | 
| 1540 | #line 1541 "MDTreeParser.cpp" | 
| 1541 | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1542 | ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 1543 | ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 1544 |  | 
| 1545 | try {      // for error handling | 
| 1546 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1547 | _t = ASTNULL; | 
| 1548 | switch ( _t->getType()) { | 
| 1549 | case NUM_INT: | 
| 1550 | case NUM_LONG: | 
| 1551 | { | 
| 1552 | ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1553 | intConst(_t); | 
| 1554 | _t = _retTree; | 
| 1555 | #line 294 "MDTreeParser.g" | 
| 1556 | dval = lexi_cast<RealType>(ic->getText()); | 
| 1557 | #line 1558 "MDTreeParser.cpp" | 
| 1558 | break; | 
| 1559 | } | 
| 1560 | case NUM_FLOAT: | 
| 1561 | case NUM_DOUBLE: | 
| 1562 | { | 
| 1563 | fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1564 | floatConst(_t); | 
| 1565 | _t = _retTree; | 
| 1566 | #line 295 "MDTreeParser.g" | 
| 1567 | dval = lexi_cast<RealType>(fc->getText()); | 
| 1568 | #line 1569 "MDTreeParser.cpp" | 
| 1569 | break; | 
| 1570 | } | 
| 1571 | default: | 
| 1572 | { | 
| 1573 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1574 | } | 
| 1575 | } | 
| 1576 | } | 
| 1577 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1578 | reportError(ex); | 
| 1579 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1580 | _t = _t->getNextSibling(); | 
| 1581 | } | 
| 1582 | _retTree = _t; | 
| 1583 | return dval; | 
| 1584 | } | 
| 1585 |  | 
| 1586 | void MDTreeParser::initializeASTFactory( ANTLR_USE_NAMESPACE(antlr)ASTFactory& ) | 
| 1587 | { | 
| 1588 | } | 
| 1589 | const char* MDTreeParser::tokenNames[] = { | 
| 1590 | "<0>", | 
| 1591 | "EOF", | 
| 1592 | "<2>", | 
| 1593 | "NULL_TREE_LOOKAHEAD", | 
| 1594 | "\"component\"", | 
| 1595 | "\"molecule\"", | 
| 1596 | "\"zconstraint\"", | 
| 1597 | "\"restraint\"", | 
| 1598 | "\"atom\"", | 
| 1599 | "\"bond\"", | 
| 1600 | "\"bend\"", | 
| 1601 | "\"torsion\"", | 
| 1602 | "\"inversion\"", | 
| 1603 | "\"rigidBody\"", | 
| 1604 | "\"cutoffGroup\"", | 
| 1605 | "\"fragment\"", | 
| 1606 | "\"members\"", | 
| 1607 | "\"center\"", | 
| 1608 | "\"position\"", | 
| 1609 | "\"orientation\"", | 
| 1610 | "\"flucQ\"", | 
| 1611 | "\"RNEMD\"", | 
| 1612 | "\"minimizer\"", | 
| 1613 | "ENDBLOCK", | 
| 1614 | "ID", | 
| 1615 | "ASSIGNEQUAL", | 
| 1616 | "SEMICOLON", | 
| 1617 | "StringLiteral", | 
| 1618 | "LCURLY", | 
| 1619 | "RCURLY", | 
| 1620 | "LBRACKET", | 
| 1621 | "RBRACKET", | 
| 1622 | "LPAREN", | 
| 1623 | "RPAREN", | 
| 1624 | "COMMA", | 
| 1625 | "NUM_INT", | 
| 1626 | "NUM_LONG", | 
| 1627 | "NUM_FLOAT", | 
| 1628 | "NUM_DOUBLE", | 
| 1629 | "DOT", | 
| 1630 | "COLON", | 
| 1631 | "QUESTIONMARK", | 
| 1632 | "Whitespace", | 
| 1633 | "Comment", | 
| 1634 | "CPPComment", | 
| 1635 | "a line directive", | 
| 1636 | "LineDirective", | 
| 1637 | "Space", | 
| 1638 | "CharLiteral", | 
| 1639 | "EndOfLine", | 
| 1640 | "Escape", | 
| 1641 | "Vocabulary", | 
| 1642 | "Digit", | 
| 1643 | "Decimal", | 
| 1644 | "HEX_DIGIT", | 
| 1645 | "EXPONENT", | 
| 1646 | "FLOAT_SUFFIX", | 
| 1647 | 0 | 
| 1648 | }; | 
| 1649 |  | 
| 1650 | const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 40894704UL, 0UL, 0UL, 0UL }; | 
| 1651 | // "component" "molecule" "zconstraint" "restraint" "flucQ" "RNEMD" "minimizer" | 
| 1652 | // ASSIGNEQUAL | 
| 1653 | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_0(_tokenSet_0_data_,4); | 
| 1654 | const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 33619712UL, 0UL, 0UL, 0UL }; | 
| 1655 | // "atom" "bond" "bend" "torsion" "inversion" "rigidBody" "cutoffGroup" | 
| 1656 | // "fragment" ASSIGNEQUAL | 
| 1657 | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_1(_tokenSet_1_data_,4); | 
| 1658 |  | 
| 1659 |  |