4 |
|
#include "io/Globals.hpp" |
5 |
|
#include "utils/StringUtils.hpp" |
6 |
|
using namespace std; |
7 |
< |
using namespace oopse; |
7 |
> |
using namespace OpenMD; |
8 |
|
} |
9 |
|
options |
10 |
|
{ |
15 |
|
|
16 |
|
options |
17 |
|
{ |
18 |
< |
k = 3; |
18 |
> |
k = 1; |
19 |
|
importVocab = MD; |
20 |
|
} |
21 |
|
{ |
35 |
|
; |
36 |
|
|
37 |
|
statement : assignment |
38 |
< |
| componentblock |
39 |
< |
| moleculeblock |
40 |
< |
| zconstraintblock |
41 |
< |
; |
38 |
> |
| componentblock |
39 |
> |
| moleculeblock |
40 |
> |
| zconstraintblock |
41 |
> |
| restraintblock |
42 |
> |
| flucqblock |
43 |
> |
| rnemdblock |
44 |
> |
; |
45 |
|
|
43 |
– |
|
46 |
|
assignment : #(ASSIGNEQUAL id:ID constant[#id]) //{blockStack.top()->assign(#ID->getText(),);} |
47 |
|
; |
48 |
|
|
49 |
|
constant [ANTLR_USE_NAMESPACE(antlr)RefAST id] |
50 |
|
{ |
51 |
|
int ival; |
52 |
< |
double dval; |
52 |
> |
RealType dval; |
53 |
|
} |
54 |
|
: ival=intConst {blockStack.top()->assign(id->getText(), ival);} |
55 |
|
| dval=floatConst {blockStack.top()->assign(id->getText(), dval);} |
70 |
|
(assignment)* |
71 |
|
ENDBLOCK ) {blockStack.top()->validate();blockStack.pop(); currConf->addZConsStamp(currZConsStamp);} |
72 |
|
; |
73 |
+ |
|
74 |
+ |
restraintblock : #(RESTRAINT {RestraintStamp* currRestraintStamp = new RestraintStamp(); blockStack.push(currRestraintStamp);} |
75 |
+ |
(assignment)* |
76 |
+ |
ENDBLOCK ) {blockStack.top()->validate();blockStack.pop(); currConf->addRestraintStamp(currRestraintStamp);} |
77 |
+ |
; |
78 |
|
|
79 |
+ |
flucqblock : #(FLUCQ {FluctuatingChargeParameters* flucQpars = new FluctuatingChargeParameters(); blockStack.push(flucQpars);} |
80 |
+ |
(assignment)* |
81 |
+ |
ENDBLOCK ) {blockStack.top()->validate();blockStack.pop(); currConf->addFluctuatingChargeParameters(flucQpars);} |
82 |
+ |
; |
83 |
+ |
|
84 |
+ |
rnemdblock : #(RNEMD {RNEMDParameters* rnemdPars = new RNEMDParameters(); blockStack.push(rnemdPars);} |
85 |
+ |
(assignment)* |
86 |
+ |
ENDBLOCK ) {blockStack.top()->validate();blockStack.pop(); currConf->addRNEMDParameters(rnemdPars);} |
87 |
+ |
; |
88 |
+ |
|
89 |
+ |
|
90 |
|
moleculeblock : #(MOLECULE {MoleculeStamp* currMoleculeStamp = new MoleculeStamp(); blockStack.push(currMoleculeStamp);} |
91 |
|
(moleculestatement)* |
92 |
|
ENDBLOCK ) {blockStack.top()->validate(); blockStack.pop(); currConf->addMoleculeStamp(currMoleculeStamp);} |
97 |
|
| bondblock |
98 |
|
| bendblock |
99 |
|
| torsionblock |
100 |
+ |
| inversionblock |
101 |
|
| rigidbodyblock |
102 |
|
| cutoffgroupblock |
103 |
|
| fragmentblock |
119 |
|
|
120 |
|
atomstatement |
121 |
|
{ |
122 |
< |
vector<double> dvec; |
122 |
> |
vector<RealType> dvec; |
123 |
|
AtomStamp* currAtomStamp = static_cast<AtomStamp*>(blockStack.top()); |
124 |
|
|
125 |
|
} |
183 |
|
} |
184 |
|
: assignment |
185 |
|
| #(MEMBERS ivec=inttuple) {currTorsionStamp->setMembers(ivec);} |
186 |
+ |
; |
187 |
+ |
|
188 |
+ |
inversionblock : #(INVERSION {InversionStamp* currInversionStamp = new InversionStamp(); blockStack.push(currInversionStamp);} |
189 |
+ |
(inversionstatement)* |
190 |
+ |
ENDBLOCK ) { |
191 |
+ |
blockStack.top()->validate(); |
192 |
+ |
blockStack.pop(); |
193 |
+ |
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
194 |
+ |
currMoleculeStamp->addInversionStamp(currInversionStamp); |
195 |
+ |
} |
196 |
+ |
; |
197 |
+ |
|
198 |
+ |
inversionstatement |
199 |
+ |
{ |
200 |
+ |
int icent; |
201 |
+ |
InversionStamp* currInversionStamp = static_cast<InversionStamp*>(blockStack.top()); |
202 |
+ |
} |
203 |
+ |
: assignment |
204 |
+ |
| #(CENTER icent=intConst) {currInversionStamp->setCenter(icent);} |
205 |
|
; |
206 |
|
|
207 |
|
rigidbodyblock |
262 |
|
|
263 |
|
|
264 |
|
|
265 |
< |
doubleNumberTuple returns [vector<double> dvec] |
265 |
> |
doubleNumberTuple returns [vector<RealType> dvec] |
266 |
|
{ |
267 |
< |
double dval; |
267 |
> |
RealType dval; |
268 |
|
} |
269 |
|
: (dval=doubleNumber {dvec.push_back(dval);})+ |
270 |
|
; |
283 |
|
; |
284 |
|
|
285 |
|
protected |
286 |
< |
doubleNumber returns [double dval] |
286 |
> |
doubleNumber returns [RealType dval] |
287 |
|
: |
288 |
< |
ic:intConst {dval = lexi_cast<double>(ic->getText());} |
289 |
< |
| fc:floatConst {dval = lexi_cast<double>(fc->getText());} |
288 |
> |
ic:intConst {dval = lexi_cast<RealType>(ic->getText());} |
289 |
> |
| fc:floatConst {dval = lexi_cast<RealType>(fc->getText());} |
290 |
|
|
291 |
|
; |
292 |
|
|
293 |
|
protected |
294 |
< |
floatConst returns [double dval] |
295 |
< |
: d1:NUM_FLOAT {dval = lexi_cast<double>(d1->getText());} |
296 |
< |
| d2:NUM_DOUBLE {dval = lexi_cast<double>(d2->getText());} |
294 |
> |
floatConst returns [RealType dval] |
295 |
> |
: d1:NUM_FLOAT {dval = lexi_cast<RealType>(d1->getText());} |
296 |
> |
| d2:NUM_DOUBLE {dval = lexi_cast<RealType>(d2->getText());} |
297 |
|
; |
298 |
|
|