[ViewVC] Diff of: OpenMD/branches/development/src/selection/DistanceFinder.cpp

Comparing:
trunk/src/selection/DistanceFinder.cpp (file contents), Revision 1442 by gezelter, Mon May 10 17:28:26 2010 UTC vs.
branches/development/src/selection/DistanceFinder.cpp (file contents), Revision 1767 by gezelter, Fri Jul 6 22:01:58 2012 UTC

#	Line 36 \| Line 36
36		* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
37		* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
38		* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).
39	<	* [4] Vardeman & Gezelter, in progress (2009).
39	>	* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010).
40	>	* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
41		*/
42
43		#include "selection/DistanceFinder.hpp"
#	Line 77 \| Line 78 \| namespace OpenMD {
78		OpenMDBitSet bsResult(nStuntDoubles_);
79		assert(bsResult.size() == bs.size());
80
81	<	for (int j = 0; j < stuntdoubles_.size(); ++j) {
81	>	for (unsigned int j = 0; j < stuntdoubles_.size(); ++j) {
82		if (stuntdoubles_[j]->isRigidBody()) {
83		RigidBody* rb = static_cast<RigidBody*>(stuntdoubles_[j]);
84		rb->updateAtoms();
#	Line 87 \| Line 88 \| namespace OpenMD {
88		for (int i = bs.firstOnBit(); i != -1; i = bs.nextOnBit(i)) {
89		center = stuntdoubles_[i];
90		centerPos = center->getPos();
91	<	for (int j = 0; j < stuntdoubles_.size(); ++j) {
91	>	for (unsigned int j = 0; j < stuntdoubles_.size(); ++j) {
92		Vector3d r =centerPos - stuntdoubles_[j]->getPos();
93		currSnapshot->wrapVector(r);
94		if (r.length() <= distance) {

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