# | Line 127 | Line 127 | namespace oopse { | |
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127 | return node; | |
128 | } | |
129 | ||
130 | < | BitSet NameFinder::match(const std::string& name){ |
131 | < | BitSet bs(nStuntDouble_); |
130 | > | OOPSEBitSet NameFinder::match(const std::string& name){ |
131 | > | OOPSEBitSet bs(nStuntDouble_); |
132 | ||
133 | StringTokenizer tokenizer(name, "."); | |
134 | ||
# | Line 173 | Line 173 | namespace oopse { | |
173 | return bs; | |
174 | } | |
175 | ||
176 | < | void NameFinder::matchMolecule(const std::string& molName, BitSet& bs) { |
176 | > | void NameFinder::matchMolecule(const std::string& molName, OOPSEBitSet& bs) { |
177 | std::vector<TreeNode*> molNodes = getMatchedChildren(root_, molName); | |
178 | std::vector<TreeNode*>::iterator i; | |
179 | for( i = molNodes.begin(); i != molNodes.end(); ++i ) { | |
# | Line 181 | Line 181 | namespace oopse { | |
181 | } | |
182 | } | |
183 | ||
184 | < | void NameFinder::matchStuntDouble(const std::string& molName, const std::string& sdName, BitSet& bs){ |
184 | > | void NameFinder::matchStuntDouble(const std::string& molName, const std::string& sdName, OOPSEBitSet& bs){ |
185 | std::vector<TreeNode*> molNodes = getMatchedChildren(root_, molName); | |
186 | std::vector<TreeNode*>::iterator i; | |
187 | for( i = molNodes.begin(); i != molNodes.end(); ++i ) { | |
# | Line 194 | Line 194 | namespace oopse { | |
194 | ||
195 | } | |
196 | ||
197 | < | void NameFinder::matchRigidAtoms(const std::string& molName, const std::string& rbName, const std::string& rbAtomName, BitSet& bs){ |
197 | > | void NameFinder::matchRigidAtoms(const std::string& molName, const std::string& rbName, const std::string& rbAtomName, OOPSEBitSet& bs){ |
198 | std::vector<TreeNode*> molNodes = getMatchedChildren(root_, molName); | |
199 | std::vector<TreeNode*>::iterator i; | |
200 | for( i = molNodes.begin(); i != molNodes.end(); ++i ) { | |
# | Line 229 | Line 229 | namespace oopse { | |
229 | } | |
230 | ||
231 | ||
232 | < | void NameFinder::matchInternalIndex(const std::string& name, int internalIndex, BitSet& bs){ |
232 | > | void NameFinder::matchInternalIndex(const std::string& name, int internalIndex, OOPSEBitSet& bs){ |
233 | ||
234 | std::map<std::string, TreeNode*>::iterator foundIter; | |
235 | SimInfo::MoleculeIterator mi; |
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