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1 | + | /* |
2 | + | * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. |
3 | + | * |
4 | + | * The University of Notre Dame grants you ("Licensee") a |
5 | + | * non-exclusive, royalty free, license to use, modify and |
6 | + | * redistribute this software in source and binary code form, provided |
7 | + | * that the following conditions are met: |
8 | + | * |
9 | + | * 1. Acknowledgement of the program authors must be made in any |
10 | + | * publication of scientific results based in part on use of the |
11 | + | * program. An acceptable form of acknowledgement is citation of |
12 | + | * the article in which the program was described (Matthew |
13 | + | * A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
14 | + | * J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
15 | + | * Parallel Simulation Engine for Molecular Dynamics," |
16 | + | * J. Comput. Chem. 26, pp. 252-271 (2005)) |
17 | + | * |
18 | + | * 2. Redistributions of source code must retain the above copyright |
19 | + | * notice, this list of conditions and the following disclaimer. |
20 | + | * |
21 | + | * 3. Redistributions in binary form must reproduce the above copyright |
22 | + | * notice, this list of conditions and the following disclaimer in the |
23 | + | * documentation and/or other materials provided with the |
24 | + | * distribution. |
25 | + | * |
26 | + | * This software is provided "AS IS," without a warranty of any |
27 | + | * kind. All express or implied conditions, representations and |
28 | + | * warranties, including any implied warranty of merchantability, |
29 | + | * fitness for a particular purpose or non-infringement, are hereby |
30 | + | * excluded. The University of Notre Dame and its licensors shall not |
31 | + | * be liable for any damages suffered by licensee as a result of |
32 | + | * using, modifying or distributing the software or its |
33 | + | * derivatives. In no event will the University of Notre Dame or its |
34 | + | * licensors be liable for any lost revenue, profit or data, or for |
35 | + | * direct, indirect, special, consequential, incidental or punitive |
36 | + | * damages, however caused and regardless of the theory of liability, |
37 | + | * arising out of the use of or inability to use software, even if the |
38 | + | * University of Notre Dame has been advised of the possibility of |
39 | + | * such damages. |
40 | + | */ |
41 | + | |
42 | #include "utils/StringUtils.hpp" | |
43 | ||
44 | < | string UpperCase(const string& S) { |
45 | < | string uc = S; |
46 | < | unsigned int n = uc.size(); |
47 | < | for (unsigned int j = 0; j < n; j++) { |
48 | < | char sj = uc[j]; |
49 | < | if (sj >= 'a' && sj <= 'z') uc[j] = (char)(sj - ('a' - 'A')); |
44 | > | namespace oopse { |
45 | > | std::string UpperCase(const std::string& S) { |
46 | > | std::string uc = S; |
47 | > | unsigned int n = uc.size(); |
48 | > | for (unsigned int j = 0; j < n; j++) { |
49 | > | char sj = uc[j]; |
50 | > | if (sj >= 'a' && sj <= 'z') uc[j] = (char)(sj - ('a' - 'A')); |
51 | > | } |
52 | > | return uc; |
53 | } | |
10 | – | return uc; |
11 | – | } |
54 | ||
55 | < | string LowerCase(const string& S) { |
56 | < | string lc = S; |
57 | < | unsigned int n = lc.size(); |
58 | < | for (unsigned int j = 0; j < n; j++) { |
59 | < | char sj = lc[j]; |
60 | < | if (sj >= 'A' && sj <= 'Z') lc[j] = (char)(sj + ('a' - 'A')); |
55 | > | std::string LowerCase(const std::string& S) { |
56 | > | std::string lc = S; |
57 | > | unsigned int n = lc.size(); |
58 | > | for (unsigned int j = 0; j < n; j++) { |
59 | > | char sj = lc[j]; |
60 | > | if (sj >= 'A' && sj <= 'Z') lc[j] = (char)(sj + ('a' - 'A')); |
61 | > | } |
62 | > | return lc; |
63 | } | |
64 | < | return lc; |
64 | > | |
65 | > | char* trimSpaces(char *str) { |
66 | > | size_t len; |
67 | > | char *right, *left; |
68 | > | |
69 | > | if (strlen(str) == 0) return(str); |
70 | > | |
71 | > | /* Trim whitespace from left side */ |
72 | > | for (left = str; isspace(*left); left++); |
73 | > | |
74 | > | /* Trim whitespace from right side */ |
75 | > | if ((len = strlen(left))) |
76 | > | { |
77 | > | right = left + (len - 1); |
78 | > | |
79 | > | while (isspace(*right)) |
80 | > | { |
81 | > | *right = '\0'; |
82 | > | right--; |
83 | > | } |
84 | > | } |
85 | > | |
86 | > | /* Only do the str copy if there were spaces to the left */ |
87 | > | if (left != str) |
88 | > | strcpy(str, left); |
89 | > | |
90 | > | return (str); |
91 | > | } |
92 | > | |
93 | > | int findBegin(std::istream &theStream, char* startText ){ |
94 | > | const int MAXLEN = 1024; |
95 | > | char readLine[MAXLEN]; |
96 | > | int foundText = 0; |
97 | > | int lineNum; |
98 | > | char* the_token; |
99 | > | char* eof_test; |
100 | > | |
101 | > | // rewind the stream |
102 | > | theStream.seekg (0, std::ios::beg); |
103 | > | lineNum = 0; |
104 | > | |
105 | > | if (!theStream.eof()) { |
106 | > | theStream.getline(readLine, MAXLEN); |
107 | > | lineNum++; |
108 | > | } else { |
109 | > | printf( "Error fast forwarding stream: stream is empty.\n"); |
110 | > | return -1; |
111 | > | } |
112 | > | |
113 | > | while ( !foundText ) { |
114 | > | |
115 | > | if (theStream.eof()) { |
116 | > | printf("Error fast forwarding stream at line %d: " |
117 | > | "stream ended unexpectedly.\n", lineNum); |
118 | > | return -1; |
119 | > | } |
120 | > | |
121 | > | the_token = strtok( readLine, " ,;\t" ); |
122 | > | if ( the_token != NULL) |
123 | > | if (!strcasecmp("begin", the_token)) { |
124 | > | the_token = strtok( NULL, " ,;\t" ); |
125 | > | if ( the_token != NULL){ |
126 | > | foundText = !strcasecmp( startText, the_token ); |
127 | > | } |
128 | > | } |
129 | > | |
130 | > | if (!foundText) { |
131 | > | if (!theStream.eof()) { |
132 | > | theStream.getline(readLine, MAXLEN); |
133 | > | lineNum++; |
134 | > | } else { |
135 | > | printf( "Error fast forwarding stream at line %d: " |
136 | > | "stream ended unexpectedly.\n", lineNum); |
137 | > | return -1; |
138 | > | } |
139 | > | } |
140 | > | } |
141 | > | return lineNum; |
142 | > | } |
143 | > | |
144 | > | int countTokens(char *line, char *delimiters) { |
145 | > | /* PURPOSE: RETURN A COUNT OF THE NUMBER OF TOKENS ON THE LINE. */ |
146 | > | |
147 | > | char *working_line; /* WORKING COPY OF LINE. */ |
148 | > | int ntokens; /* NUMBER OF TOKENS FOUND IN LINE. */ |
149 | > | char *strtok_ptr; /* POINTER FOR STRTOK. */ |
150 | > | |
151 | > | strtok_ptr= working_line= strdup(line); |
152 | > | |
153 | > | ntokens=0; |
154 | > | while (strtok(strtok_ptr,delimiters)!=NULL) |
155 | > | { |
156 | > | ntokens++; |
157 | > | strtok_ptr=NULL; |
158 | > | } |
159 | > | |
160 | > | free(working_line); |
161 | > | return(ntokens); |
162 | > | } |
163 | > | |
164 | > | int isEndLine(char *line) { |
165 | > | char *working_line; |
166 | > | char *foo; |
167 | > | |
168 | > | working_line = strdup(line); |
169 | > | |
170 | > | foo = strtok(working_line, " ,;\t"); |
171 | > | |
172 | > | if (foo != NULL) { |
173 | > | |
174 | > | if (!strcasecmp(foo, "end")) return 1; |
175 | > | |
176 | > | } |
177 | > | |
178 | > | return 0; |
179 | > | } |
180 | > | |
181 | > | std::string OOPSE_itoa(int value, unsigned int base = 10) { |
182 | > | const char digitMap[] = "0123456789abcdef"; |
183 | > | std::string buf; |
184 | > | |
185 | > | if (base == 0 || base > 16) { |
186 | > | return buf; |
187 | > | } |
188 | > | |
189 | > | if (value == 0) { |
190 | > | buf = "0"; |
191 | > | return buf; |
192 | > | } |
193 | > | |
194 | > | // Take care negative int: |
195 | > | |
196 | > | std::string sign; |
197 | > | int _value = value; |
198 | > | if (value < 0) { |
199 | > | _value = -value; |
200 | > | sign = "-"; |
201 | > | } |
202 | > | |
203 | > | // Translating number to string with base: |
204 | > | for (int i = 30; _value && i ; --i) { |
205 | > | buf = digitMap[ _value % base ] + buf; |
206 | > | _value /= base; |
207 | > | } |
208 | > | return sign.append(buf); |
209 | > | } |
210 | > | |
211 | > | |
212 | > | std::string getPrefix(const std::string& str) { |
213 | > | return str.substr(0, str.rfind('.')); |
214 | > | } |
215 | > | |
216 | > | std::string getSuffix(const std::string& str) { |
217 | > | return str.substr(0, str.find('.')); |
218 | > | } |
219 | > | |
220 | } |
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> | Changed lines |