--- trunk/src/utils/StringUtils.hpp 2008/07/30 18:11:19 1282 +++ branches/development/src/utils/StringUtils.hpp 2012/10/22 20:42:10 1808 @@ -6,19 +6,10 @@ * redistribute this software in source and binary code form, provided * that the following conditions are met: * - * 1. Acknowledgement of the program authors must be made in any - * publication of scientific results based in part on use of the - * program. An acceptable form of acknowledgement is citation of - * the article in which the program was described (Matthew - * A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher - * J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented - * Parallel Simulation Engine for Molecular Dynamics," - * J. Comput. Chem. 26, pp. 252-271 (2005)) - * - * 2. Redistributions of source code must retain the above copyright + * 1. Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * - * 3. Redistributions in binary form must reproduce the above copyright + * 2. Redistributions in binary form must reproduce the above copyright * notice, this list of conditions and the following disclaimer in the * documentation and/or other materials provided with the * distribution. @@ -37,6 +28,16 @@ * arising out of the use of or inability to use software, even if the * University of Notre Dame has been advised of the possibility of * such damages. + * + * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your + * research, please cite the appropriate papers when you publish your + * work. Good starting points are: + * + * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). + * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). + * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). + * [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). + * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). */ /** @@ -54,7 +55,7 @@ #include #include -namespace oopse { +namespace OpenMD { /** * Converts a string to UPPER CASE @@ -84,7 +85,7 @@ namespace oopse { * * @return the line number of the block within the theStream */ - int findBegin(std::istream &theStream, char* startText ); + int findBegin(std::istream &theStream, const char* startText ); /** * Counts the number of tokens on line which are delimited by the characters @@ -110,7 +111,7 @@ namespace oopse { /** * Convert a variable to a string - * @param T data type + * @tparam T data type * @param v data to be converted * @return a string */ @@ -147,7 +148,7 @@ namespace oopse { bool isInteger(const std::string& str); - std::string OOPSE_itoa(int value, unsigned int base = 10); + std::string OpenMD_itoa(int value, unsigned int base = 10); /**@todo need implementation */ std::string getPrefix(const std::string& str); @@ -173,6 +174,6 @@ std::string containerToString(const ContainerType& con return oss.str(); } - + unsigned long long memparse (char *ptr, char **retptr); } #endif