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Comparing trunk/src/visitors/OtherVisitor.hpp (file contents):
Revision 543 by tim, Thu May 26 22:45:00 2005 UTC vs.
Revision 1455 by gezelter, Thu Jun 24 20:44:18 2010 UTC

#	Line 6 | Line 6
6		* redistribute this software in source and binary code form, provided
7		* that the following conditions are met:
8		*
9	<	* 1. Acknowledgement of the program authors must be made in any
10	<	*    publication of scientific results based in part on use of the
11	<	*    program.  An acceptable form of acknowledgement is citation of
12	<	*    the article in which the program was described (Matthew
13	<	*    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14	<	*    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15	<	*    Parallel Simulation Engine for Molecular Dynamics,"
16	<	*    J. Comput. Chem. 26, pp. 252-271 (2005))
17	<	*
18	<	* 2. Redistributions of source code must retain the above copyright
9	>	* 1. Redistributions of source code must retain the above copyright
10		*    notice, this list of conditions and the following disclaimer.
11		*
12	<	* 3. Redistributions in binary form must reproduce the above copyright
12	>	* 2. Redistributions in binary form must reproduce the above copyright
13		*    notice, this list of conditions and the following disclaimer in the
14		*    documentation and/or other materials provided with the
15		*    distribution.
#	Line 37 | Line 28
28		* arising out of the use of or inability to use software, even if the
29		* University of Notre Dame has been advised of the possibility of
30		* such damages.
31	+	*
32	+	* SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your
33	+	* research, please cite the appropriate papers when you publish your
34	+	* work.  Good starting points are:
35	+	*
36	+	* [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
37	+	* [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
38	+	* [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).
39	+	* [4]  Vardeman & Gezelter, in progress (2009).
40		*/
41
42		#ifndef VISITORS_OTHERVISITOR_HPP
#	Line 51 | Line 51
51		#include "selection/SelectionManager.hpp"
52		#include "selection/SelectionEvaluator.hpp"
53
54	<	namespace oopse {
54	>	namespace OpenMD {
55
56		class SimInfo;
57
#	Line 113 | Line 113 | namespace oopse {
113
114		void writeFrame(std::ostream& outStream);
115		void clear() {frame.clear();}
116	<
116	>	void setPosOnly(bool posOnly){posOnly_ = posOnly;}
117		protected:
118		void internalVisit(StuntDouble* sd);
119		bool isSelected(StuntDouble* sd);
120
121		private:
122	+	std::string trimmedName(const std::string& atomType);
123	+
124		SimInfo* info;
125		SelectionManager seleMan;
126		SelectionEvaluator evaluator;
127		std::vector<std::string> frame;
128	<
128	>	bool posOnly_;
129		};
130
131
#	Line 158 | Line 160 | namespace oopse {
160		};
161
162
163	<	}//namespace oopse
163	>	}//namespace OpenMD
164		#endif //_OTHERVISITOR_H_

Comparing trunk/src/visitors/OtherVisitor.hpp (property svn:keywords):
Revision 543 by tim, Thu May 26 22:45:00 2005 UTC vs.
Revision 1455 by gezelter, Thu Jun 24 20:44:18 2010 UTC

#	Line 0 | Line 1
1	+	Author Id Revision Date

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