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root/OpenMD/trunk/CMakeLists.txt
Revision: 1650
Committed: Tue Sep 27 12:42:03 2011 UTC (14 years, 1 month ago) by gezelter
Content type: text/plain
Original Path: branches/development/CMakeLists.txt
File size: 19539 byte(s)
Log Message: 
fixing install permissions

File Contents

# User Rev Content
1 chuckv 1466 # Top level cmake script for OpenMD.
2    
3     cmake_minimum_required (VERSION 2.6)
4     project(OpenMD)
5    
6     # OpenMD version number.
7 chuckv 1496 set (VERSION_MAJOR "2")
8     set (VERSION_MINOR "0")
9     set (VERSION_TINY "0")
10 chuckv 1466
11     # cmake modules that are needed to build oopse
12 gezelter 1639 SET(CMAKE_MODULE_PATH ${OpenMD_SOURCE_DIR}/cmake/modules)
13 gezelter 1647 IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
14     SET(CMAKE_INSTALL_PREFIX
15     "/usr/local/openmd" CACHE PATH "OpenMD install prefix" FORCE
16     )
17     ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
18 chuckv 1466
19 gezelter 1647 # ---------- Setup output Directories -------------------------
20     SET (CMAKE_LIBRARY_OUTPUT_DIRECTORY
21     ${PROJECT_BINARY_DIR}/lib
22     CACHE PATH
23     "Single directory for all shared libraries"
24     )
25     # --------- Setup the Executable output Directory -------------
26     SET (CMAKE_RUNTIME_OUTPUT_DIRECTORY
27     ${PROJECT_BINARY_DIR}/bin
28     CACHE PATH
29     "Single directory for all Executables."
30     )
31     # --------- Setup the static library directory -------------
32     SET (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
33     ${PROJECT_BINARY_DIR}/lib
34     CACHE PATH
35     "Single directory for all static libraries."
36     )
37    
38    
39 gezelter 1626 enable_language(CXX C)
40 chuckv 1466
41 gezelter 1636 if ( APPLE )
42     set(MPI_COMPILER /opt/local/lib/openmpi/bin/mpic++)
43     set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND" )
44     endif( APPLE )
45     FIND_PACKAGE(MPI)
46     IF ( MPI_FOUND )
47     SET(CMAKE_REQUIRED_INCLUDES "${MPI_INCLUDE_PATH};${CMAKE_REQUIRED_INCLUDES}")
48     INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
49     ENDIF()
50    
51     FIND_PACKAGE(Subversion)
52     IF ( Subversion_FOUND AND EXISTS ${PROJECT_SOURCE_DIR}/.svn )
53     Subversion_WC_INFO(${PROJECT_SOURCE_DIR} Project)
54     MESSAGE("Current revision is ${Project_WC_REVISION}")
55     Subversion_WC_LOG(${PROJECT_SOURCE_DIR} Project)
56     SET(SVN_REV ${Project_WC_REVISION})
57     ADD_DEFINITIONS( -DSVN_REV=${Project_WC_REVISION} )
58     ENDIF()
59    
60 chuckv 1466 # Optional libraries: If we can find these, we will build with them
61     # Look for OpenBabel libraries
62 chuckv 1496 find_package(OpenBabel2)
63     IF(OPENBABEL2_FOUND)
64     SET(USE_OPENBABEL)
65     include_directories(${OPENBABEL2_INCLUDE_DIR})
66     message(STATUS "Openbabel libs: " ${OPENBABEL2_LIBRARIES})
67     # TARGET_LINK_LIBRARIES(${OPENBABEL2_LIBRARIES})
68     ENDIF(OPENBABEL2_FOUND)
69    
70 chuckv 1466 #Look for QHULL Libraries
71     find_package(QHULL)
72 chuckv 1496 IF(QHULL_FOUND)
73     SET(HAVE_QHULL 1)
74 chuckv 1500 include_directories(${QHULL_INCLUDE_DIR})
75 chuckv 1496 LINK_LIBRARIES(${QHULL_LIBRARIES})
76     ENDIF(QHULL_FOUND)
77 chuckv 1466
78    
79 chuckv 1496 # zlib stuff
80     find_package(ZLIB)
81     if(ZLIB_FOUND)
82     SET(HAVE_LIBZ 1)
83     add_definitions(-DHAVE_LIBZ)
84     include_directories(${ZLIB_INCLUDE_DIR})
85     LINK_LIBRARIES(${ZLIB_LIBRARIES})
86     endif(ZLIB_FOUND)
87    
88     #FFTW
89     INCLUDE(${CMAKE_MODULE_PATH}/FindFFTW.cmake)
90     IF(FFTW_FOUND)
91     SET(HAVE_LIBFFTW 1)
92     SET(HAVE_FFTW3_H)
93     INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
94     LINK_LIBRARIES(${FFTW_LIBRARIES})
95     ENDIF(FFTW_FOUND)
96    
97    
98     #include checks
99     include(CheckIncludeFile)
100     CHECK_INCLUDE_FILE(fftw3.h HAVE_FFTW3_H)
101     CHECK_INCLUDE_FILE(fftw.h HAVE_FFWT_H)
102     CHECK_INCLUDE_FILE(dfftw.h HAVE_DFFTW_H)
103     CHECK_INCLUDE_FILE(cmath.h HAVE_CMATH_H)
104 gezelter 1636 check_include_file(limits.h HAVE_LIMITS_H)
105     check_include_file(stdlib.h HAVE_STDLIB_H)
106     check_include_file(string.h HAVE_STRING_H)
107     check_include_file("sys/ioctl.h" HAVE_SYS_IOCTL_H)
108     check_include_file(unistd.h HAVE_UNISTD_H)
109 chuckv 1496
110     #symbol checks
111     include(CheckSymbolExists)
112    
113     #function checks
114     include(CheckFunctionExists)
115 gezelter 1636 check_function_exists(atexit HAVE_ATEXIT)
116 chuckv 1496 check_function_exists(floor HAVE_FLOOR)
117 gezelter 1636 check_function_exists(pow HAVE_POW)
118     check_function_exists(select HAVE_SELECT)
119     check_function_exists(sqrt HAVE_SQRT)
120     check_function_exists(strcasecmp HAVE_STRCASECMP)
121     check_function_exists(strchr HAVE_STRCHR)
122     check_function_exists(strdup HAVE_STRDUP)
123     check_function_exists(strncasecmp HAVE_STRNCASECMP)
124     check_function_exists(strstr HAVE_STRSTR)
125     check_function_exists(strtol HAVE_STRTOL)
126     check_function_exists(strtoull HAVE_STRTOULL)
127     check_function_exists(sysmp HAVE_SYSMP)
128     check_function_exists(table HAVE_TABLE)
129 chuckv 1496
130    
131 gezelter 1639 FIND_PACKAGE(Perl)
132     IF(PERL_FOUND)
133     SET(PERL ${PERL_EXECUTABLE})
134     ELSE(PERL_FOUND)
135     MESSAGE(STATUS "Failed to find perl")
136     ENDIF(PERL_FOUND)
137    
138     FIND_PACKAGE(PythonInterp)
139     IF(PYTHON_EXECUTABLE)
140     SET(PYTHON ${PYTHON_EXECUTABLE})
141     ELSE(PYTHON_EXECUTABLE)
142     MESSAGE(STATUS "Failed to find python")
143     ENDIF(PYTHON_EXECUTABLE)
144    
145     SET(PERL_INSTALLDIRS "site" CACHE STRING "Perl installation locations")
146    
147    
148 chuckv 1496 configure_file (
149     "${PROJECT_SOURCE_DIR}/src/config.h.cmake"
150     "${PROJECT_SOURCE_DIR}/src/config.h"
151     )
152     include_directories (${PROJECT_SOURCE_DIR}/src)
153    
154     #CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.in ${CMAKE_CURRENT_BINARY_DIR}/config.h)
155    
156    
157 chuckv 1466 #Add executables for build
158 gezelter 1639 set (PROGRAMS
159     openmd
160     openmd_MPI
161     Dump2XYZ
162     simpleBuilder
163     StaticProps
164     DynamicProps
165     randomBuilder
166     nanoparticleBuilder
167     thermalizer
168     atom2md
169     Hydro)
170 chuckv 1466
171 gezelter 1639 set(SOURCE
172     src/antlr/ANTLRUtil.cpp
173     src/antlr/ASTFactory.cpp
174     src/antlr/ASTNULLType.cpp
175     src/antlr/ASTRefCount.cpp
176     src/antlr/BaseAST.cpp
177     src/antlr/BitSet.cpp
178     src/antlr/CharBuffer.cpp
179     src/antlr/CharScanner.cpp
180     src/antlr/CommonAST.cpp
181     src/antlr/CommonASTWithHiddenTokens.cpp
182     src/antlr/CommonHiddenStreamToken.cpp
183     src/antlr/CommonToken.cpp
184     src/antlr/InputBuffer.cpp
185     src/antlr/LLkParser.cpp
186     src/antlr/MismatchedCharException.cpp
187     src/antlr/MismatchedTokenException.cpp
188     src/antlr/NoViableAltException.cpp
189     src/antlr/NoViableAltForCharException.cpp
190     src/antlr/Parser.cpp
191     src/antlr/RecognitionException.cpp
192     src/antlr/String.cpp
193     src/antlr/Token.cpp
194     src/antlr/TokenBuffer.cpp
195     src/antlr/TokenRefCount.cpp
196     src/antlr/TokenStreamBasicFilter.cpp
197     src/antlr/TokenStreamHiddenTokenFilter.cpp
198     src/antlr/TokenStreamRewriteEngine.cpp
199     src/antlr/TokenStreamSelector.cpp
200     src/antlr/TreeParser.cpp
201     src/brains/BlockSnapshotManager.cpp
202     src/brains/DataStorage.cpp
203     src/brains/MoleculeCreator.cpp
204     src/brains/PairList.cpp
205     src/brains/Register.cpp
206     src/brains/SimSnapshotManager.cpp
207     src/brains/Snapshot.cpp
208     src/brains/Stats.cpp
209     src/constraints/Rattle.cpp
210     src/hydrodynamics/Ellipsoid.cpp
211     src/hydrodynamics/HydroProp.cpp
212     src/hydrodynamics/Sphere.cpp
213     src/integrators/DLM.cpp
214     src/integrators/Integrator.cpp
215     src/integrators/IntegratorFactory.cpp
216     src/integrators/LangevinDynamics.cpp
217     src/integrators/LDForceManager.cpp
218     src/integrators/NgammaT.cpp
219     src/integrators/NPAT.cpp
220     src/integrators/NPrT.cpp
221     src/integrators/NPT.cpp
222     src/integrators/NPTf.cpp
223     src/integrators/NPTi.cpp
224     src/integrators/NPTsz.cpp
225     src/integrators/NPTxyz.cpp
226     src/integrators/NVE.cpp
227     src/integrators/NVT.cpp
228     src/integrators/VelocityVerletIntegrator.cpp
229     src/io/AtomTypesSectionParser.cpp
230     src/io/BaseAtomTypesSectionParser.cpp
231     src/io/BendTypesSectionParser.cpp
232     src/io/BondTypesSectionParser.cpp
233     src/io/ChargeAtomTypesSectionParser.cpp
234     src/io/DirectionalAtomTypesSectionParser.cpp
235     src/io/EAMAtomTypesSectionParser.cpp
236     src/io/ForceFieldOptions.cpp
237     src/io/GayBerneAtomTypesSectionParser.cpp
238     src/io/Globals.cpp
239     src/io/gzstream.cpp
240     src/io/InversionTypesSectionParser.cpp
241     src/io/LennardJonesAtomTypesSectionParser.cpp
242     src/io/MultipoleAtomTypesSectionParser.cpp
243     src/io/NonBondedInteractionsSectionParser.cpp
244     src/io/OptionSectionParser.cpp
245     src/io/ParamConstraint.cpp
246     src/io/SCAtomTypesSectionParser.cpp
247     src/io/SectionParser.cpp
248     src/io/SectionParserManager.cpp
249     src/io/ShapeAtomTypesSectionParser.cpp
250     src/io/StickyAtomTypesSectionParser.cpp
251     src/io/StickyPowerAtomTypesSectionParser.cpp
252     src/io/TorsionTypesSectionParser.cpp
253     src/io/ZConsReader.cpp
254     src/lattice/CubicLattice.cpp
255     src/lattice/FCCLattice.cpp
256     src/lattice/Lattice.cpp
257     src/lattice/LatticeFactory.cpp
258     src/lattice/shapedLattice.cpp
259     src/math/ChebyshevT.cpp
260     src/math/ChebyshevU.cpp
261     src/math/CubicSpline.cpp
262     src/math/LegendrePolynomial.cpp
263     src/math/RealSphericalHarmonic.cpp
264     src/math/RMSD.cpp
265     src/math/SeqRandNumGen.cpp
266     src/math/SphericalHarmonic.cpp
267     src/math/Wigner3jm.cpp
268     src/mdParser/FilenameObserver.cpp
269     src/mdParser/MDLexer.cpp
270     src/mdParser/MDParser.cpp
271     src/mdParser/MDTreeParser.cpp
272     src/minimizers/MinimizerFactory.cpp
273     src/minimizers/MinimizerParameterSet.cpp
274     src/nonbonded/EAM.cpp
275     src/nonbonded/Electrostatic.cpp
276     src/nonbonded/GB.cpp
277     src/nonbonded/InteractionManager.cpp
278     src/nonbonded/LJ.cpp
279     src/nonbonded/MAW.cpp
280     src/nonbonded/Morse.cpp
281     src/nonbonded/RepulsivePower.cpp
282     src/nonbonded/SC.cpp
283     src/nonbonded/Sticky.cpp
284     src/nonbonded/SwitchingFunction.cpp
285     src/primitives/Atom.cpp
286     src/primitives/Bend.cpp
287     src/primitives/DirectionalAtom.cpp
288     src/primitives/GhostBend.cpp
289     src/primitives/GhostTorsion.cpp
290     src/primitives/Inversion.cpp
291     src/primitives/Molecule.cpp
292     src/primitives/RigidBody.cpp
293     src/primitives/StuntDouble.cpp
294     src/primitives/Torsion.cpp
295     src/primitives/UreyBradleyBend.cpp
296     src/restraints/MolecularRestraint.cpp
297     src/restraints/ObjectRestraint.cpp
298     src/selection/DistanceFinder.cpp
299     src/selection/HullFinder.cpp
300     src/selection/IndexFinder.cpp
301     src/selection/NameFinder.cpp
302     src/selection/SelectionCompiler.cpp
303     src/selection/SelectionEvaluator.cpp
304     src/selection/SelectionManager.cpp
305     src/selection/SelectionToken.cpp
306     src/selection/TokenMap.cpp
307     src/types/AtomStamp.cpp
308     src/types/AtomType.cpp
309     src/types/BendStamp.cpp
310     src/types/BondStamp.cpp
311     src/types/CharmmTorsionType.cpp
312     src/types/Component.cpp
313     src/types/CutoffGroupStamp.cpp
314     src/types/DirectionalAtomType.cpp
315     src/types/FragmentStamp.cpp
316     src/types/ImproperCosineInversionType.cpp
317     src/types/InversionStamp.cpp
318     src/types/MoleculeStamp.cpp
319     src/types/NonBondedInteractionType.cpp
320     src/types/RestraintStamp.cpp
321     src/types/RigidBodyStamp.cpp
322     src/types/ShapeAtomType.cpp
323     src/types/TorsionStamp.cpp
324     src/types/ZconsStamp.cpp
325     src/UseTheForce/Amber_FF.cpp
326     src/UseTheForce/CLAYFF.cpp
327     src/UseTheForce/DUFF.cpp
328     src/UseTheForce/EADM_FF.cpp
329     src/UseTheForce/EAM_FF.cpp
330     src/UseTheForce/ForceField.cpp
331     src/UseTheForce/ForceFieldFactory.cpp
332     src/UseTheForce/MnM_FF.cpp
333     src/UseTheForce/SC_FF.cpp
334     src/UseTheForce/SHAPES_FF.cpp
335     src/utils/ElementsTable.cpp
336     src/utils/MoLocator.cpp
337     src/utils/OpenMDBitSet.cpp
338     src/utils/PropertyMap.cpp
339     src/utils/StringTokenizer.cpp
340     src/utils/StringUtils.cpp
341     src/utils/Trim.cpp
342     src/utils/Utility.cpp
343     src/utils/wildcards.cpp
344     src/visitors/AtomNameVisitor.cpp
345     src/visitors/AtomVisitor.cpp
346     src/visitors/CompositeVisitor.cpp
347     src/visitors/LipidTransVisitor.cpp
348     src/visitors/OtherVisitor.cpp
349     src/visitors/ReplacementVisitor.cpp
350     src/visitors/RigidBodyVisitor.cpp
351     src/visitors/ZconsVisitor.cpp
352     )
353 chuckv 1466
354 gezelter 1639 set( PARALLEL_SOURCE
355     src/brains/ForceManager.cpp
356     src/brains/SimCreator.cpp
357     src/brains/SimInfo.cpp
358     src/brains/Thermo.cpp
359     src/constraints/ZconstraintForceManager.cpp
360     src/integrators/RNEMD.cpp
361     src/integrators/Velocitizer.cpp
362     src/io/DumpReader.cpp
363     src/io/DumpWriter.cpp
364     src/io/RestReader.cpp
365     src/io/RestWriter.cpp
366     src/io/StatWriter.cpp
367     src/io/ZConsWriter.cpp
368     src/io/ifstrstream.cpp
369     src/math/ParallelRandNumGen.cpp
370     src/minimizers/CGFamilyMinimizer.cpp
371     src/minimizers/Minimizer.cpp
372     src/minimizers/PRCG.cpp
373     src/minimizers/SDMinimizer.cpp
374     src/parallel/ForceDecomposition.cpp
375     src/parallel/ForceMatrixDecomposition.cpp
376     src/restraints/RestraintForceManager.cpp
377     src/restraints/ThermoIntegrationForceManager.cpp
378     src/utils/ProgressBar.cpp
379     src/utils/simError.c
380     )
381    
382     IF(QHULL_FOUND)
383     set(QHULL_SOURCE
384     src/integrators/LangevinHullDynamics.cpp
385     src/math/Triangle.cpp
386     )
387     set(QHULL_PARALLEL_SOURCE
388     src/integrators/LangevinHullForceManager.cpp
389     src/math/ConvexHull.cpp
390     src/math/AlphaHull.cpp
391     )
392     ENDIF(QHULL_FOUND)
393    
394     add_library(openmd_core STATIC ${SOURCE} ${QHULL_SOURCE} )
395     add_library(openmd_single STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
396    
397     IF(MPI_FOUND)
398     add_library(openmd_parallel STATIC ${PARALLEL_SOURCE} ${QHULL_PARALLEL_SOURCE} )
399     set_target_properties(openmd_parallel PROPERTIES
400     COMPILE_DEFINITIONS IS_MPI
401     )
402     ENDIF(MPI_FOUND)
403    
404     add_executable(openmd src/applications/openmd/openmd.cpp)
405     target_link_libraries(openmd openmd_single openmd_core openmd_single openmd_core)
406    
407     if (MPI_FOUND)
408     add_executable(openmd_MPI src/applications/openmd/openmd.cpp)
409     set_target_properties(openmd_MPI PROPERTIES
410     COMPILE_DEFINITIONS IS_MPI
411     )
412     target_link_libraries(openmd_MPI openmd_parallel openmd_core openmd_parallel openmd_core)
413 gezelter 1647 INSTALL(TARGETS
414     openmd_parallel openmd_MPI
415     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
416     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
417     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
418     )
419 gezelter 1639 ENDIF (MPI_FOUND)
420    
421     set (DUMP2XYZSOURCE
422     src/applications/dump2Xyz/Dump2XYZ.cpp
423     src/applications/dump2Xyz/Dump2XYZCmd.c
424     )
425    
426     set (DYNAMICPROPSSOURCE
427     src/applications/dynamicProps/ActionCorrFunc.cpp
428     src/applications/dynamicProps/CrossTimeCorrFunc.cpp
429     src/applications/dynamicProps/DipoleCorrFunc.cpp
430     src/applications/dynamicProps/DirectionalRCorrFunc.cpp
431     src/applications/dynamicProps/DynamicProps.cpp
432     src/applications/dynamicProps/EnergyCorrFunc.cpp
433     src/applications/dynamicProps/FrameTimeCorrFunc.cpp
434     src/applications/dynamicProps/LegendreCorrFunc.cpp
435     src/applications/dynamicProps/MomentumCorrFunc.cpp
436     src/applications/dynamicProps/ParticleTimeCorrFunc.cpp
437     src/applications/dynamicProps/RadialRCorrFunc.cpp
438     src/applications/dynamicProps/RCorrFunc.cpp
439     src/applications/dynamicProps/StressCorrFunc.cpp
440     src/applications/dynamicProps/SystemDipoleCorrFunc.cpp
441     src/applications/dynamicProps/ThetaCorrFunc.cpp
442     src/applications/dynamicProps/TimeCorrFunc.cpp
443     src/applications/dynamicProps/VCorrFunc.cpp
444     src/applications/dynamicProps/DynamicPropsCmd.c
445     )
446    
447     set (HYDROSOURCE
448     src/applications/hydrodynamics/AnalyticalModel.cpp
449     src/applications/hydrodynamics/ApproximationModel.cpp
450     src/applications/hydrodynamics/BeadModel.cpp
451     src/applications/hydrodynamics/CompositeShape.cpp
452     src/applications/hydrodynamics/Hydro.cpp
453     src/applications/hydrodynamics/HydrodynamicsModel.cpp
454     src/applications/hydrodynamics/HydrodynamicsModelFactory.cpp
455     src/applications/hydrodynamics/RoughShell.cpp
456     src/applications/hydrodynamics/ShapeBuilder.cpp
457     src/applications/hydrodynamics/HydroCmd.c
458     )
459    
460     set (STATICPROPSSOURCE
461     src/applications/staticProps/AngleR.cpp
462     src/applications/staticProps/BondAngleDistribution.cpp
463     src/applications/staticProps/BondOrderParameter.cpp
464     src/applications/staticProps/BOPofR.cpp
465     src/applications/staticProps/DensityPlot.cpp
466     src/applications/staticProps/GofAngle2.cpp
467     src/applications/staticProps/GofR.cpp
468     src/applications/staticProps/GofRAngle.cpp
469     src/applications/staticProps/GofRZ.cpp
470     src/applications/staticProps/GofXyz.cpp
471     src/applications/staticProps/GofZ.cpp
472     src/applications/staticProps/Hxy.cpp
473     src/applications/staticProps/NanoLength.cpp
474     src/applications/staticProps/NanoVolume.cpp
475     src/applications/staticProps/ObjectCount.cpp
476     src/applications/staticProps/P2OrderParameter.cpp
477     src/applications/staticProps/pAngle.cpp
478     src/applications/staticProps/RadialDistrFunc.cpp
479     src/applications/staticProps/RhoR.cpp
480     src/applications/staticProps/RhoZ.cpp
481     src/applications/staticProps/RippleOP.cpp
482     src/applications/staticProps/SCDOrderParameter.cpp
483     src/applications/staticProps/StaticProps.cpp
484     src/applications/staticProps/TetrahedralityParam.cpp
485     src/applications/staticProps/TwoDGofR.cpp
486     src/applications/staticProps/StaticPropsCmd.c
487     )
488    
489     set (NANOPARTICLEBUILDERSOURCE
490     src/applications/nanoparticleBuilder/nanoparticleBuilder.cpp
491     src/applications/nanoparticleBuilder/shapedLatticeSpherical.cpp
492     src/applications/nanoparticleBuilder/nanoparticleBuilderCmd.c
493     )
494    
495     set (RANDOMBUILDERSOURCE
496     src/applications/randomBuilder/randomBuilder.cpp
497     src/applications/randomBuilder/randomBuilderCmd.c
498     )
499    
500     set(SIMPLEBUILDERSOURCE
501     src/applications/simpleBuilder/simpleBuilder.cpp
502     src/applications/simpleBuilder/simpleBuilderCmd.c
503     )
504    
505     set(THERMALIZERSOURCE
506     src/applications/thermalizer/thermalizer.cpp
507     src/applications/thermalizer/thermalizerCmd.c
508     )
509    
510     add_executable(Dump2XYZ ${DUMP2XYZSOURCE})
511     target_link_libraries(Dump2XYZ openmd_single openmd_core openmd_single openmd_core)
512     add_executable(DynamicProps ${DYNAMICPROPSSOURCE})
513     target_link_libraries(DynamicProps openmd_single openmd_core openmd_single openmd_core)
514     add_executable(Hydro ${HYDROSOURCE})
515     target_link_libraries(Hydro openmd_single openmd_core openmd_single openmd_core)
516     add_executable(StaticProps ${STATICPROPSSOURCE})
517     target_link_libraries(StaticProps openmd_single openmd_core openmd_single openmd_core)
518     add_executable(nanoparticleBuilder ${NANOPARTICLEBUILDERSOURCE})
519     target_link_libraries(nanoparticleBuilder openmd_single openmd_core openmd_single openmd_core)
520     add_executable(randomBuilder ${RANDOMBUILDERSOURCE})
521     target_link_libraries(randomBuilder openmd_single openmd_core openmd_single openmd_core)
522     add_executable(simpleBuilder ${SIMPLEBUILDERSOURCE})
523     target_link_libraries(simpleBuilder openmd_single openmd_core openmd_single openmd_core)
524     add_executable(thermalizer ${THERMALIZERSOURCE})
525     target_link_libraries(thermalizer openmd_single openmd_core openmd_single openmd_core)
526    
527     if (OPENBABEL2_FOUND)
528     set (ATOM2MDSOURCE
529     src/applications/atom2md/atom2md.cpp
530     src/applications/atom2md/openmdformat.cpp
531     )
532     add_executable(atom2md ${ATOM2MDSOURCE})
533     target_link_libraries(atom2md openmd_single openmd_core openmd_single openmd_core ${OPENBABEL2_LIBRARIES})
534 gezelter 1647 INSTALL(TARGETS atom2md RUNTIME DESTINATION bin
535     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
536 gezelter 1639 ENDIF (OPENBABEL2_FOUND)
537    
538    
539     set(PY_FILES
540     src/applications/hydrodynamics/diffExplainer
541     src/applications/utilities/affineScale
542     src/applications/utilities/dumpConverter
543     src/applications/utilities/md-solvator
544     src/applications/utilities/md2md
545     src/applications/utilities/mdSplit
546     src/applications/utilities/principalAxisCalculator
547     src/applications/utilities/stat2visco
548     src/applications/utilities/waterRotator
549     )
550    
551     IF(PYTHON_EXECUTABLE)
552     foreach(PY_FILE ${PY_FILES})
553 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PY_FILE}" NAME)
554     CONFIGURE_FILE(${PY_FILE}
555     "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
556     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
557     DESTINATION bin
558     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
559 gezelter 1639 endforeach(PY_FILE)
560     ENDIF(PYTHON_EXECUTABLE)
561    
562     set(PERL_FILES
563     src/applications/utilities/solvator
564     src/applications/utilities/waterBoxer
565     )
566    
567     IF(PERL_FOUND)
568     foreach(PERL_FILE ${PERL_FILES})
569 gezelter 1647 GET_FILENAME_COMPONENT(filename "${PERL_FILE}" NAME)
570     configure_file(${PERL_FILE} "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}" @ONLY)
571     INSTALL(FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${filename}"
572     DESTINATION bin
573     PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
574    
575 gezelter 1639 endforeach(PERL_FILE)
576     ENDIF(PERL_FOUND)
577 gezelter 1647
578     INSTALL(FILES AUTHORS LICENSE README DESTINATION .
579     PERMISSIONS OWNER_READ GROUP_READ WORLD_READ)
580     INSTALL(TARGETS
581     openmd_core
582     openmd_single
583     openmd
584     Dump2XYZ
585     simpleBuilder
586     StaticProps
587     DynamicProps
588     randomBuilder
589     nanoparticleBuilder
590     thermalizer
591     Hydro
592     RUNTIME DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
593     LIBRARY DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
594     ARCHIVE DESTINATION lib PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ
595     )
596    
597     install(DIRECTORY forceFields/
598     DESTINATION forceFields
599 gezelter 1650 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
600     PATTERN ".svn" EXCLUDE
601 gezelter 1647 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)
602     install(DIRECTORY samples/
603     DESTINATION samples
604 gezelter 1650 DIRECTORY_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
605     PATTERN ".svn" EXCLUDE
606 gezelter 1647 PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ)