Fixes for ConstraintWriter in parallel, some cppcheck cleanup starting preparation for 2.2 release
Updated for 2.1
MERGE OpenMD development 1783:1878 into trunk
MERGE OpenMD development branch 1465:1781 into trunk
Added "doc" build target.
migrating Doxyfile to a more sensible location, removing old build cruft
Creating busticated version of OpenMD
fixed Doxygen generating file
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
more tests on math library
more build fixes
adding doxygen configuration file
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