| 1 |
/* |
| 2 |
File autogenerated by gengetopt version 2.15 |
| 3 |
generated with the following command: |
| 4 |
gengetopt -u -i DynamicProps.ggo -F DynamicPropsCmd |
| 5 |
|
| 6 |
The developers of gengetopt consider the fixed text that goes in all |
| 7 |
gengetopt output files to be in the public domain: |
| 8 |
we make no copyright claims on it. |
| 9 |
*/ |
| 10 |
|
| 11 |
/* If we use autoconf. */ |
| 12 |
#ifdef HAVE_CONFIG_H |
| 13 |
#include "config.h" |
| 14 |
#endif |
| 15 |
|
| 16 |
#include <stdio.h> |
| 17 |
#include <stdlib.h> |
| 18 |
#include <string.h> |
| 19 |
|
| 20 |
#include "getopt.h" |
| 21 |
|
| 22 |
#include "DynamicPropsCmd.h" |
| 23 |
|
| 24 |
static |
| 25 |
void clear_given (struct gengetopt_args_info *args_info); |
| 26 |
static |
| 27 |
void clear_args (struct gengetopt_args_info *args_info); |
| 28 |
|
| 29 |
static int |
| 30 |
cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required, const char *additional_error); |
| 31 |
|
| 32 |
static int |
| 33 |
cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error); |
| 34 |
|
| 35 |
static char * |
| 36 |
gengetopt_strdup (const char *s); |
| 37 |
|
| 38 |
static |
| 39 |
void clear_given (struct gengetopt_args_info *args_info) |
| 40 |
{ |
| 41 |
args_info->help_given = 0 ; |
| 42 |
args_info->version_given = 0 ; |
| 43 |
args_info->input_given = 0 ; |
| 44 |
args_info->output_given = 0 ; |
| 45 |
args_info->sele1_given = 0 ; |
| 46 |
args_info->sele2_given = 0 ; |
| 47 |
args_info->order_given = 0 ; |
| 48 |
args_info->rcorr_given = 0 ; |
| 49 |
args_info->vcorr_given = 0 ; |
| 50 |
args_info->dcorr_given = 0 ; |
| 51 |
args_info->lcorr_given = 0 ; |
| 52 |
args_info->r_rcorr_given = 0 ; |
| 53 |
args_info->thetacorr_given = 0 ; |
| 54 |
args_info->dynamicProps_group_counter = 0 ; |
| 55 |
} |
| 56 |
|
| 57 |
static |
| 58 |
void clear_args (struct gengetopt_args_info *args_info) |
| 59 |
{ |
| 60 |
args_info->input_arg = NULL; |
| 61 |
args_info->input_orig = NULL; |
| 62 |
args_info->output_arg = NULL; |
| 63 |
args_info->output_orig = NULL; |
| 64 |
args_info->sele1_arg = NULL; |
| 65 |
args_info->sele1_orig = NULL; |
| 66 |
args_info->sele2_arg = NULL; |
| 67 |
args_info->sele2_orig = NULL; |
| 68 |
args_info->order_orig = NULL; |
| 69 |
|
| 70 |
} |
| 71 |
|
| 72 |
void |
| 73 |
cmdline_parser_print_version (void) |
| 74 |
{ |
| 75 |
printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION); |
| 76 |
} |
| 77 |
|
| 78 |
void |
| 79 |
cmdline_parser_print_help (void) |
| 80 |
{ |
| 81 |
cmdline_parser_print_version (); |
| 82 |
printf("\nUsage: DynamicProps [OPTIONS]... [FILES]...\n\n"); |
| 83 |
printf("%s\n"," -h, --help Print help and exit"); |
| 84 |
printf("%s\n"," -V, --version Print version and exit"); |
| 85 |
printf("%s\n"," -i, --input=filename input dump file"); |
| 86 |
printf("%s\n"," -o, --output=filename output file name"); |
| 87 |
printf("%s\n"," --sele1=selection script select first stuntdouble set"); |
| 88 |
printf("%s\n"," --sele2=selection script select second stuntdouble set (if sele2 is not \n set, use script from sele1)"); |
| 89 |
printf("%s\n"," --order=INT Lengendre Polynomial Order"); |
| 90 |
printf("%s\n","\n Group: dynamicProps\n an option of this group is required"); |
| 91 |
printf("%s\n"," -r, --rcorr rmsd"); |
| 92 |
printf("%s\n"," -v, --vcorr velocity correlation function"); |
| 93 |
printf("%s\n"," -d, --dcorr dipole correlation function"); |
| 94 |
printf("%s\n"," -l, --lcorr Lengendre correlation function"); |
| 95 |
printf("%s\n"," --r_rcorr Radial rmsd"); |
| 96 |
printf("%s\n"," --thetacorr Angular rmsd"); |
| 97 |
|
| 98 |
} |
| 99 |
|
| 100 |
void |
| 101 |
cmdline_parser_init (struct gengetopt_args_info *args_info) |
| 102 |
{ |
| 103 |
clear_given (args_info); |
| 104 |
clear_args (args_info); |
| 105 |
|
| 106 |
args_info->inputs = NULL; |
| 107 |
args_info->inputs_num = 0; |
| 108 |
} |
| 109 |
|
| 110 |
static void |
| 111 |
cmdline_parser_release (struct gengetopt_args_info *args_info) |
| 112 |
{ |
| 113 |
|
| 114 |
unsigned int i; |
| 115 |
if (args_info->input_arg) |
| 116 |
{ |
| 117 |
free (args_info->input_arg); /* free previous argument */ |
| 118 |
args_info->input_arg = 0; |
| 119 |
} |
| 120 |
if (args_info->input_orig) |
| 121 |
{ |
| 122 |
free (args_info->input_orig); /* free previous argument */ |
| 123 |
args_info->input_orig = 0; |
| 124 |
} |
| 125 |
if (args_info->output_arg) |
| 126 |
{ |
| 127 |
free (args_info->output_arg); /* free previous argument */ |
| 128 |
args_info->output_arg = 0; |
| 129 |
} |
| 130 |
if (args_info->output_orig) |
| 131 |
{ |
| 132 |
free (args_info->output_orig); /* free previous argument */ |
| 133 |
args_info->output_orig = 0; |
| 134 |
} |
| 135 |
if (args_info->sele1_arg) |
| 136 |
{ |
| 137 |
free (args_info->sele1_arg); /* free previous argument */ |
| 138 |
args_info->sele1_arg = 0; |
| 139 |
} |
| 140 |
if (args_info->sele1_orig) |
| 141 |
{ |
| 142 |
free (args_info->sele1_orig); /* free previous argument */ |
| 143 |
args_info->sele1_orig = 0; |
| 144 |
} |
| 145 |
if (args_info->sele2_arg) |
| 146 |
{ |
| 147 |
free (args_info->sele2_arg); /* free previous argument */ |
| 148 |
args_info->sele2_arg = 0; |
| 149 |
} |
| 150 |
if (args_info->sele2_orig) |
| 151 |
{ |
| 152 |
free (args_info->sele2_orig); /* free previous argument */ |
| 153 |
args_info->sele2_orig = 0; |
| 154 |
} |
| 155 |
if (args_info->order_orig) |
| 156 |
{ |
| 157 |
free (args_info->order_orig); /* free previous argument */ |
| 158 |
args_info->order_orig = 0; |
| 159 |
} |
| 160 |
|
| 161 |
for (i = 0; i < args_info->inputs_num; ++i) |
| 162 |
free (args_info->inputs [i]); |
| 163 |
|
| 164 |
if (args_info->inputs_num) |
| 165 |
free (args_info->inputs); |
| 166 |
|
| 167 |
clear_given (args_info); |
| 168 |
} |
| 169 |
|
| 170 |
int |
| 171 |
cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info) |
| 172 |
{ |
| 173 |
FILE *outfile; |
| 174 |
int i = 0; |
| 175 |
|
| 176 |
outfile = fopen(filename, "w"); |
| 177 |
|
| 178 |
if (!outfile) |
| 179 |
{ |
| 180 |
fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename); |
| 181 |
return EXIT_FAILURE; |
| 182 |
} |
| 183 |
|
| 184 |
if (args_info->help_given) { |
| 185 |
fprintf(outfile, "%s\n", "help"); |
| 186 |
} |
| 187 |
if (args_info->version_given) { |
| 188 |
fprintf(outfile, "%s\n", "version"); |
| 189 |
} |
| 190 |
if (args_info->input_given) { |
| 191 |
if (args_info->input_orig) { |
| 192 |
fprintf(outfile, "%s=\"%s\"\n", "input", args_info->input_orig); |
| 193 |
} else { |
| 194 |
fprintf(outfile, "%s\n", "input"); |
| 195 |
} |
| 196 |
} |
| 197 |
if (args_info->output_given) { |
| 198 |
if (args_info->output_orig) { |
| 199 |
fprintf(outfile, "%s=\"%s\"\n", "output", args_info->output_orig); |
| 200 |
} else { |
| 201 |
fprintf(outfile, "%s\n", "output"); |
| 202 |
} |
| 203 |
} |
| 204 |
if (args_info->sele1_given) { |
| 205 |
if (args_info->sele1_orig) { |
| 206 |
fprintf(outfile, "%s=\"%s\"\n", "sele1", args_info->sele1_orig); |
| 207 |
} else { |
| 208 |
fprintf(outfile, "%s\n", "sele1"); |
| 209 |
} |
| 210 |
} |
| 211 |
if (args_info->sele2_given) { |
| 212 |
if (args_info->sele2_orig) { |
| 213 |
fprintf(outfile, "%s=\"%s\"\n", "sele2", args_info->sele2_orig); |
| 214 |
} else { |
| 215 |
fprintf(outfile, "%s\n", "sele2"); |
| 216 |
} |
| 217 |
} |
| 218 |
if (args_info->order_given) { |
| 219 |
if (args_info->order_orig) { |
| 220 |
fprintf(outfile, "%s=\"%s\"\n", "order", args_info->order_orig); |
| 221 |
} else { |
| 222 |
fprintf(outfile, "%s\n", "order"); |
| 223 |
} |
| 224 |
} |
| 225 |
if (args_info->rcorr_given) { |
| 226 |
fprintf(outfile, "%s\n", "rcorr"); |
| 227 |
} |
| 228 |
if (args_info->vcorr_given) { |
| 229 |
fprintf(outfile, "%s\n", "vcorr"); |
| 230 |
} |
| 231 |
if (args_info->dcorr_given) { |
| 232 |
fprintf(outfile, "%s\n", "dcorr"); |
| 233 |
} |
| 234 |
if (args_info->lcorr_given) { |
| 235 |
fprintf(outfile, "%s\n", "lcorr"); |
| 236 |
} |
| 237 |
if (args_info->r_rcorr_given) { |
| 238 |
fprintf(outfile, "%s\n", "r_rcorr"); |
| 239 |
} |
| 240 |
if (args_info->thetacorr_given) { |
| 241 |
fprintf(outfile, "%s\n", "thetacorr"); |
| 242 |
} |
| 243 |
|
| 244 |
fclose (outfile); |
| 245 |
|
| 246 |
i = EXIT_SUCCESS; |
| 247 |
return i; |
| 248 |
} |
| 249 |
|
| 250 |
void |
| 251 |
cmdline_parser_free (struct gengetopt_args_info *args_info) |
| 252 |
{ |
| 253 |
cmdline_parser_release (args_info); |
| 254 |
} |
| 255 |
|
| 256 |
|
| 257 |
/* gengetopt_strdup() */ |
| 258 |
/* strdup.c replacement of strdup, which is not standard */ |
| 259 |
char * |
| 260 |
gengetopt_strdup (const char *s) |
| 261 |
{ |
| 262 |
char *result = NULL; |
| 263 |
if (!s) |
| 264 |
return result; |
| 265 |
|
| 266 |
result = (char*)malloc(strlen(s) + 1); |
| 267 |
if (result == (char*)0) |
| 268 |
return (char*)0; |
| 269 |
strcpy(result, s); |
| 270 |
return result; |
| 271 |
} |
| 272 |
|
| 273 |
static void |
| 274 |
reset_group_dynamicProps(struct gengetopt_args_info *args_info); |
| 275 |
|
| 276 |
static void |
| 277 |
reset_group_dynamicProps(struct gengetopt_args_info *args_info) |
| 278 |
{ |
| 279 |
if (! args_info->dynamicProps_group_counter) |
| 280 |
return; |
| 281 |
|
| 282 |
args_info->rcorr_given = 0 ; |
| 283 |
args_info->vcorr_given = 0 ; |
| 284 |
args_info->dcorr_given = 0 ; |
| 285 |
args_info->lcorr_given = 0 ; |
| 286 |
args_info->r_rcorr_given = 0 ; |
| 287 |
args_info->thetacorr_given = 0 ; |
| 288 |
|
| 289 |
args_info->dynamicProps_group_counter = 0; |
| 290 |
} |
| 291 |
|
| 292 |
int |
| 293 |
cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info) |
| 294 |
{ |
| 295 |
return cmdline_parser2 (argc, argv, args_info, 0, 1, 1); |
| 296 |
} |
| 297 |
|
| 298 |
int |
| 299 |
cmdline_parser2 (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required) |
| 300 |
{ |
| 301 |
int result; |
| 302 |
|
| 303 |
result = cmdline_parser_internal (argc, argv, args_info, override, initialize, check_required, NULL); |
| 304 |
|
| 305 |
if (result == EXIT_FAILURE) |
| 306 |
{ |
| 307 |
cmdline_parser_free (args_info); |
| 308 |
exit (EXIT_FAILURE); |
| 309 |
} |
| 310 |
|
| 311 |
return result; |
| 312 |
} |
| 313 |
|
| 314 |
int |
| 315 |
cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name) |
| 316 |
{ |
| 317 |
int result = EXIT_SUCCESS; |
| 318 |
|
| 319 |
if (cmdline_parser_required2(args_info, prog_name, NULL) > 0) |
| 320 |
result = EXIT_FAILURE; |
| 321 |
|
| 322 |
if (result == EXIT_FAILURE) |
| 323 |
{ |
| 324 |
cmdline_parser_free (args_info); |
| 325 |
exit (EXIT_FAILURE); |
| 326 |
} |
| 327 |
|
| 328 |
return result; |
| 329 |
} |
| 330 |
|
| 331 |
int |
| 332 |
cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error) |
| 333 |
{ |
| 334 |
int error = 0; |
| 335 |
|
| 336 |
if (! args_info->input_given) |
| 337 |
{ |
| 338 |
fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : "")); |
| 339 |
error = 1; |
| 340 |
} |
| 341 |
if (args_info->dynamicProps_group_counter == 0) |
| 342 |
{ |
| 343 |
fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required.%s\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : "")); |
| 344 |
error = 1; |
| 345 |
} |
| 346 |
|
| 347 |
|
| 348 |
return error; |
| 349 |
} |
| 350 |
|
| 351 |
int |
| 352 |
cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required, const char *additional_error) |
| 353 |
{ |
| 354 |
int c; /* Character of the parsed option. */ |
| 355 |
|
| 356 |
int error = 0; |
| 357 |
struct gengetopt_args_info local_args_info; |
| 358 |
|
| 359 |
if (initialize) |
| 360 |
cmdline_parser_init (args_info); |
| 361 |
|
| 362 |
cmdline_parser_init (&local_args_info); |
| 363 |
|
| 364 |
optarg = 0; |
| 365 |
optind = 1; |
| 366 |
opterr = 1; |
| 367 |
optopt = '?'; |
| 368 |
|
| 369 |
while (1) |
| 370 |
{ |
| 371 |
int option_index = 0; |
| 372 |
char *stop_char; |
| 373 |
|
| 374 |
static struct option long_options[] = { |
| 375 |
{ "help", 0, NULL, 'h' }, |
| 376 |
{ "version", 0, NULL, 'V' }, |
| 377 |
{ "input", 1, NULL, 'i' }, |
| 378 |
{ "output", 1, NULL, 'o' }, |
| 379 |
{ "sele1", 1, NULL, 0 }, |
| 380 |
{ "sele2", 1, NULL, 0 }, |
| 381 |
{ "order", 1, NULL, 0 }, |
| 382 |
{ "rcorr", 0, NULL, 'r' }, |
| 383 |
{ "vcorr", 0, NULL, 'v' }, |
| 384 |
{ "dcorr", 0, NULL, 'd' }, |
| 385 |
{ "lcorr", 0, NULL, 'l' }, |
| 386 |
{ "r_rcorr", 0, NULL, 0 }, |
| 387 |
{ "thetacorr", 0, NULL, 0 }, |
| 388 |
{ NULL, 0, NULL, 0 } |
| 389 |
}; |
| 390 |
|
| 391 |
stop_char = 0; |
| 392 |
c = getopt_long (argc, argv, "hVi:o:rvdl", long_options, &option_index); |
| 393 |
|
| 394 |
if (c == -1) break; /* Exit from `while (1)' loop. */ |
| 395 |
|
| 396 |
switch (c) |
| 397 |
{ |
| 398 |
case 'h': /* Print help and exit. */ |
| 399 |
cmdline_parser_print_help (); |
| 400 |
cmdline_parser_free (&local_args_info); |
| 401 |
exit (EXIT_SUCCESS); |
| 402 |
|
| 403 |
case 'V': /* Print version and exit. */ |
| 404 |
cmdline_parser_print_version (); |
| 405 |
cmdline_parser_free (&local_args_info); |
| 406 |
exit (EXIT_SUCCESS); |
| 407 |
|
| 408 |
case 'i': /* input dump file. */ |
| 409 |
if (local_args_info.input_given) |
| 410 |
{ |
| 411 |
fprintf (stderr, "%s: `--input' (`-i') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 412 |
goto failure; |
| 413 |
} |
| 414 |
if (args_info->input_given && ! override) |
| 415 |
continue; |
| 416 |
local_args_info.input_given = 1; |
| 417 |
args_info->input_given = 1; |
| 418 |
if (args_info->input_arg) |
| 419 |
free (args_info->input_arg); /* free previous string */ |
| 420 |
args_info->input_arg = gengetopt_strdup (optarg); |
| 421 |
if (args_info->input_orig) |
| 422 |
free (args_info->input_orig); /* free previous string */ |
| 423 |
args_info->input_orig = gengetopt_strdup (optarg); |
| 424 |
break; |
| 425 |
|
| 426 |
case 'o': /* output file name. */ |
| 427 |
if (local_args_info.output_given) |
| 428 |
{ |
| 429 |
fprintf (stderr, "%s: `--output' (`-o') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 430 |
goto failure; |
| 431 |
} |
| 432 |
if (args_info->output_given && ! override) |
| 433 |
continue; |
| 434 |
local_args_info.output_given = 1; |
| 435 |
args_info->output_given = 1; |
| 436 |
if (args_info->output_arg) |
| 437 |
free (args_info->output_arg); /* free previous string */ |
| 438 |
args_info->output_arg = gengetopt_strdup (optarg); |
| 439 |
if (args_info->output_orig) |
| 440 |
free (args_info->output_orig); /* free previous string */ |
| 441 |
args_info->output_orig = gengetopt_strdup (optarg); |
| 442 |
break; |
| 443 |
|
| 444 |
case 'r': /* rmsd. */ |
| 445 |
if (local_args_info.rcorr_given) |
| 446 |
{ |
| 447 |
fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 448 |
goto failure; |
| 449 |
} |
| 450 |
if (args_info->rcorr_given && ! override) |
| 451 |
continue; |
| 452 |
local_args_info.rcorr_given = 1; |
| 453 |
args_info->rcorr_given = 1; |
| 454 |
if (args_info->dynamicProps_group_counter && override) |
| 455 |
reset_group_dynamicProps (args_info); |
| 456 |
args_info->dynamicProps_group_counter += 1; |
| 457 |
break; |
| 458 |
|
| 459 |
case 'v': /* velocity correlation function. */ |
| 460 |
if (local_args_info.vcorr_given) |
| 461 |
{ |
| 462 |
fprintf (stderr, "%s: `--vcorr' (`-v') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 463 |
goto failure; |
| 464 |
} |
| 465 |
if (args_info->vcorr_given && ! override) |
| 466 |
continue; |
| 467 |
local_args_info.vcorr_given = 1; |
| 468 |
args_info->vcorr_given = 1; |
| 469 |
if (args_info->dynamicProps_group_counter && override) |
| 470 |
reset_group_dynamicProps (args_info); |
| 471 |
args_info->dynamicProps_group_counter += 1; |
| 472 |
break; |
| 473 |
|
| 474 |
case 'd': /* dipole correlation function. */ |
| 475 |
if (local_args_info.dcorr_given) |
| 476 |
{ |
| 477 |
fprintf (stderr, "%s: `--dcorr' (`-d') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 478 |
goto failure; |
| 479 |
} |
| 480 |
if (args_info->dcorr_given && ! override) |
| 481 |
continue; |
| 482 |
local_args_info.dcorr_given = 1; |
| 483 |
args_info->dcorr_given = 1; |
| 484 |
if (args_info->dynamicProps_group_counter && override) |
| 485 |
reset_group_dynamicProps (args_info); |
| 486 |
args_info->dynamicProps_group_counter += 1; |
| 487 |
break; |
| 488 |
|
| 489 |
case 'l': /* Lengendre correlation function. */ |
| 490 |
if (local_args_info.lcorr_given) |
| 491 |
{ |
| 492 |
fprintf (stderr, "%s: `--lcorr' (`-l') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 493 |
goto failure; |
| 494 |
} |
| 495 |
if (args_info->lcorr_given && ! override) |
| 496 |
continue; |
| 497 |
local_args_info.lcorr_given = 1; |
| 498 |
args_info->lcorr_given = 1; |
| 499 |
if (args_info->dynamicProps_group_counter && override) |
| 500 |
reset_group_dynamicProps (args_info); |
| 501 |
args_info->dynamicProps_group_counter += 1; |
| 502 |
break; |
| 503 |
|
| 504 |
|
| 505 |
case 0: /* Long option with no short option */ |
| 506 |
/* select first stuntdouble set. */ |
| 507 |
if (strcmp (long_options[option_index].name, "sele1") == 0) |
| 508 |
{ |
| 509 |
if (local_args_info.sele1_given) |
| 510 |
{ |
| 511 |
fprintf (stderr, "%s: `--sele1' option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 512 |
goto failure; |
| 513 |
} |
| 514 |
if (args_info->sele1_given && ! override) |
| 515 |
continue; |
| 516 |
local_args_info.sele1_given = 1; |
| 517 |
args_info->sele1_given = 1; |
| 518 |
if (args_info->sele1_arg) |
| 519 |
free (args_info->sele1_arg); /* free previous string */ |
| 520 |
args_info->sele1_arg = gengetopt_strdup (optarg); |
| 521 |
if (args_info->sele1_orig) |
| 522 |
free (args_info->sele1_orig); /* free previous string */ |
| 523 |
args_info->sele1_orig = gengetopt_strdup (optarg); |
| 524 |
} |
| 525 |
/* select second stuntdouble set (if sele2 is not set, use script from sele1). */ |
| 526 |
else if (strcmp (long_options[option_index].name, "sele2") == 0) |
| 527 |
{ |
| 528 |
if (local_args_info.sele2_given) |
| 529 |
{ |
| 530 |
fprintf (stderr, "%s: `--sele2' option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 531 |
goto failure; |
| 532 |
} |
| 533 |
if (args_info->sele2_given && ! override) |
| 534 |
continue; |
| 535 |
local_args_info.sele2_given = 1; |
| 536 |
args_info->sele2_given = 1; |
| 537 |
if (args_info->sele2_arg) |
| 538 |
free (args_info->sele2_arg); /* free previous string */ |
| 539 |
args_info->sele2_arg = gengetopt_strdup (optarg); |
| 540 |
if (args_info->sele2_orig) |
| 541 |
free (args_info->sele2_orig); /* free previous string */ |
| 542 |
args_info->sele2_orig = gengetopt_strdup (optarg); |
| 543 |
} |
| 544 |
/* Lengendre Polynomial Order. */ |
| 545 |
else if (strcmp (long_options[option_index].name, "order") == 0) |
| 546 |
{ |
| 547 |
if (local_args_info.order_given) |
| 548 |
{ |
| 549 |
fprintf (stderr, "%s: `--order' option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 550 |
goto failure; |
| 551 |
} |
| 552 |
if (args_info->order_given && ! override) |
| 553 |
continue; |
| 554 |
local_args_info.order_given = 1; |
| 555 |
args_info->order_given = 1; |
| 556 |
args_info->order_arg = strtol (optarg, &stop_char, 0); |
| 557 |
if (!(stop_char && *stop_char == '\0')) { |
| 558 |
fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg); |
| 559 |
goto failure; |
| 560 |
} |
| 561 |
if (args_info->order_orig) |
| 562 |
free (args_info->order_orig); /* free previous string */ |
| 563 |
args_info->order_orig = gengetopt_strdup (optarg); |
| 564 |
} |
| 565 |
/* Radial rmsd. */ |
| 566 |
else if (strcmp (long_options[option_index].name, "r_rcorr") == 0) |
| 567 |
{ |
| 568 |
if (local_args_info.r_rcorr_given) |
| 569 |
{ |
| 570 |
fprintf (stderr, "%s: `--r_rcorr' option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 571 |
goto failure; |
| 572 |
} |
| 573 |
if (args_info->r_rcorr_given && ! override) |
| 574 |
continue; |
| 575 |
local_args_info.r_rcorr_given = 1; |
| 576 |
args_info->r_rcorr_given = 1; |
| 577 |
if (args_info->dynamicProps_group_counter && override) |
| 578 |
reset_group_dynamicProps (args_info); |
| 579 |
args_info->dynamicProps_group_counter += 1; |
| 580 |
break; |
| 581 |
} |
| 582 |
/* Angular rmsd. */ |
| 583 |
else if (strcmp (long_options[option_index].name, "thetacorr") == 0) |
| 584 |
{ |
| 585 |
if (local_args_info.thetacorr_given) |
| 586 |
{ |
| 587 |
fprintf (stderr, "%s: `--thetacorr' option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 588 |
goto failure; |
| 589 |
} |
| 590 |
if (args_info->thetacorr_given && ! override) |
| 591 |
continue; |
| 592 |
local_args_info.thetacorr_given = 1; |
| 593 |
args_info->thetacorr_given = 1; |
| 594 |
if (args_info->dynamicProps_group_counter && override) |
| 595 |
reset_group_dynamicProps (args_info); |
| 596 |
args_info->dynamicProps_group_counter += 1; |
| 597 |
break; |
| 598 |
} |
| 599 |
|
| 600 |
break; |
| 601 |
case '?': /* Invalid option. */ |
| 602 |
/* `getopt_long' already printed an error message. */ |
| 603 |
goto failure; |
| 604 |
|
| 605 |
default: /* bug: option not considered. */ |
| 606 |
fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : "")); |
| 607 |
abort (); |
| 608 |
} /* switch */ |
| 609 |
} /* while */ |
| 610 |
|
| 611 |
if (args_info->dynamicProps_group_counter > 1) |
| 612 |
{ |
| 613 |
fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required.%s\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : "")); |
| 614 |
error = 1; |
| 615 |
} |
| 616 |
|
| 617 |
|
| 618 |
|
| 619 |
if (check_required) |
| 620 |
{ |
| 621 |
error += cmdline_parser_required2 (args_info, argv[0], additional_error); |
| 622 |
} |
| 623 |
|
| 624 |
cmdline_parser_release (&local_args_info); |
| 625 |
|
| 626 |
if ( error ) |
| 627 |
return (EXIT_FAILURE); |
| 628 |
|
| 629 |
if (optind < argc) |
| 630 |
{ |
| 631 |
int i = 0 ; |
| 632 |
|
| 633 |
args_info->inputs_num = argc - optind ; |
| 634 |
args_info->inputs = |
| 635 |
(char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ; |
| 636 |
while (optind < argc) |
| 637 |
args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind++]) ; |
| 638 |
} |
| 639 |
|
| 640 |
return 0; |
| 641 |
|
| 642 |
failure: |
| 643 |
|
| 644 |
cmdline_parser_release (&local_args_info); |
| 645 |
return (EXIT_FAILURE); |
| 646 |
} |
