| 48 |
|
" -d, --dcorr dipole correlation function", |
| 49 |
|
" -l, --lcorr Lengendre correlation function", |
| 50 |
|
" --lcorrZ Lengendre correlation function binned by Z", |
| 51 |
+ |
" --cohZ Lengendre correlation function for OH bond \n vectors binned by Z", |
| 52 |
|
" -M, --sdcorr System dipole correlation function", |
| 53 |
|
" --r_rcorr Radial rmsd", |
| 54 |
|
" --thetacorr Angular rmsd", |
| 97 |
|
args_info->dcorr_given = 0 ; |
| 98 |
|
args_info->lcorr_given = 0 ; |
| 99 |
|
args_info->lcorrZ_given = 0 ; |
| 100 |
+ |
args_info->cohZ_given = 0 ; |
| 101 |
|
args_info->sdcorr_given = 0 ; |
| 102 |
|
args_info->r_rcorr_given = 0 ; |
| 103 |
|
args_info->thetacorr_given = 0 ; |
| 148 |
|
args_info->dcorr_help = gengetopt_args_info_help[13] ; |
| 149 |
|
args_info->lcorr_help = gengetopt_args_info_help[14] ; |
| 150 |
|
args_info->lcorrZ_help = gengetopt_args_info_help[15] ; |
| 151 |
< |
args_info->sdcorr_help = gengetopt_args_info_help[16] ; |
| 152 |
< |
args_info->r_rcorr_help = gengetopt_args_info_help[17] ; |
| 153 |
< |
args_info->thetacorr_help = gengetopt_args_info_help[18] ; |
| 154 |
< |
args_info->drcorr_help = gengetopt_args_info_help[19] ; |
| 155 |
< |
args_info->helfandEcorr_help = gengetopt_args_info_help[20] ; |
| 156 |
< |
args_info->momentum_help = gengetopt_args_info_help[21] ; |
| 157 |
< |
args_info->stresscorr_help = gengetopt_args_info_help[22] ; |
| 151 |
> |
args_info->cohZ_help = gengetopt_args_info_help[16] ; |
| 152 |
> |
args_info->sdcorr_help = gengetopt_args_info_help[17] ; |
| 153 |
> |
args_info->r_rcorr_help = gengetopt_args_info_help[18] ; |
| 154 |
> |
args_info->thetacorr_help = gengetopt_args_info_help[19] ; |
| 155 |
> |
args_info->drcorr_help = gengetopt_args_info_help[20] ; |
| 156 |
> |
args_info->helfandEcorr_help = gengetopt_args_info_help[21] ; |
| 157 |
> |
args_info->momentum_help = gengetopt_args_info_help[22] ; |
| 158 |
> |
args_info->stresscorr_help = gengetopt_args_info_help[23] ; |
| 159 |
|
|
| 160 |
|
} |
| 161 |
|
|
| 316 |
|
write_into_file(outfile, "lcorr", 0, 0 ); |
| 317 |
|
if (args_info->lcorrZ_given) |
| 318 |
|
write_into_file(outfile, "lcorrZ", 0, 0 ); |
| 319 |
+ |
if (args_info->cohZ_given) |
| 320 |
+ |
write_into_file(outfile, "cohZ", 0, 0 ); |
| 321 |
|
if (args_info->sdcorr_given) |
| 322 |
|
write_into_file(outfile, "sdcorr", 0, 0 ); |
| 323 |
|
if (args_info->r_rcorr_given) |
| 391 |
|
args_info->dcorr_given = 0 ; |
| 392 |
|
args_info->lcorr_given = 0 ; |
| 393 |
|
args_info->lcorrZ_given = 0 ; |
| 394 |
+ |
args_info->cohZ_given = 0 ; |
| 395 |
|
args_info->sdcorr_given = 0 ; |
| 396 |
|
args_info->r_rcorr_given = 0 ; |
| 397 |
|
args_info->thetacorr_given = 0 ; |
| 655 |
|
{ "dcorr", 0, NULL, 'd' }, |
| 656 |
|
{ "lcorr", 0, NULL, 'l' }, |
| 657 |
|
{ "lcorrZ", 0, NULL, 0 }, |
| 658 |
+ |
{ "cohZ", 0, NULL, 0 }, |
| 659 |
|
{ "sdcorr", 0, NULL, 'M' }, |
| 660 |
|
{ "r_rcorr", 0, NULL, 0 }, |
| 661 |
|
{ "thetacorr", 0, NULL, 0 }, |
| 896 |
|
goto failure; |
| 897 |
|
|
| 898 |
|
} |
| 899 |
+ |
/* Lengendre correlation function for OH bond vectors binned by Z. */ |
| 900 |
+ |
else if (strcmp (long_options[option_index].name, "cohZ") == 0) |
| 901 |
+ |
{ |
| 902 |
+ |
|
| 903 |
+ |
if (args_info->dynamicProps_group_counter && override) |
| 904 |
+ |
reset_group_dynamicProps (args_info); |
| 905 |
+ |
args_info->dynamicProps_group_counter += 1; |
| 906 |
+ |
|
| 907 |
+ |
if (update_arg( 0 , |
| 908 |
+ |
0 , &(args_info->cohZ_given), |
| 909 |
+ |
&(local_args_info.cohZ_given), optarg, 0, 0, ARG_NO, |
| 910 |
+ |
check_ambiguity, override, 0, 0, |
| 911 |
+ |
"cohZ", '-', |
| 912 |
+ |
additional_error)) |
| 913 |
+ |
goto failure; |
| 914 |
+ |
|
| 915 |
+ |
} |
| 916 |
|
/* Radial rmsd. */ |
| 917 |
|
else if (strcmp (long_options[option_index].name, "r_rcorr") == 0) |
| 918 |
|
{ |