--- trunk/src/applications/dynamicProps/DynamicPropsCmd.c	2006/01/30 22:25:27	876
+++ trunk/src/applications/dynamicProps/DynamicPropsCmd.c	2006/03/24 16:49:09	916
@@ -44,7 +44,8 @@ cmdline_parser_print_help (void)
   printf("      --order=INT               Lengendre Polynomial Order\n");
   printf("\n");
   printf(" Group: dynamicProps  an option of this group is required\n");
-  printf("  -r, --rcorr                   rmsd\n");
+  printf("  -m, --rmsd                    rmsd\n");
+  printf("  -r, --rcorr                   position correlation function\n");
   printf("  -v, --vcorr                   velocity correlation function\n");
   printf("  -d, --dcorr                   dipole correlation function\n");
   printf("  -l, --lcorr                   Lengendre correlation function\n");
@@ -80,6 +81,7 @@ cmdline_parser (int argc, char * const *argv, struct g
   args_info->sele1_given = 0 ;
   args_info->sele2_given = 0 ;
   args_info->order_given = 0 ;
+  args_info->rmsd_given = 0 ;
   args_info->rcorr_given = 0 ;
   args_info->vcorr_given = 0 ;
   args_info->dcorr_given = 0 ;
@@ -111,6 +113,7 @@ cmdline_parser (int argc, char * const *argv, struct g
         { "sele1",	1, NULL, 0 },
         { "sele2",	1, NULL, 0 },
         { "order",	1, NULL, 0 },
+        { "rmsd",	0, NULL, 'm' },
         { "rcorr",	0, NULL, 'r' },
         { "vcorr",	0, NULL, 'v' },
         { "dcorr",	0, NULL, 'd' },
@@ -119,7 +122,7 @@ cmdline_parser (int argc, char * const *argv, struct g
       };
 
       stop_char = 0;
-      c = getopt_long (argc, argv, "hVi:o:rvdl", long_options, &option_index);
+      c = getopt_long (argc, argv, "hVi:o:mrvdl", long_options, &option_index);
 
       if (c == -1) break;	/* Exit from `while (1)' loop.  */
 
@@ -157,7 +160,18 @@ cmdline_parser (int argc, char * const *argv, struct g
           args_info->output_arg = gengetopt_strdup (optarg);
           break;
 
-        case 'r':	/* rmsd.  */
+        case 'm':	/* rmsd.  */
+          if (args_info->rmsd_given)
+            {
+              fprintf (stderr, "%s: `--rmsd' (`-m') option given more than once\n", CMDLINE_PARSER_PACKAGE);
+              clear_args ();
+              exit (EXIT_FAILURE);
+            }
+          args_info->rmsd_given = 1;
+          dynamicProps_group_counter += 1;
+        break;
+
+        case 'r':	/* position correlation function.  */
           if (args_info->rcorr_given)
             {
               fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);