--- trunk/src/applications/dynamicProps/DynamicPropsCmd.c 2006/03/24 16:49:09 916 +++ trunk/src/applications/dynamicProps/DynamicPropsCmd.c 2006/03/24 17:29:07 917 @@ -44,8 +44,7 @@ cmdline_parser_print_help (void) printf(" --order=INT Lengendre Polynomial Order\n"); printf("\n"); printf(" Group: dynamicProps an option of this group is required\n"); - printf(" -m, --rmsd rmsd\n"); - printf(" -r, --rcorr position correlation function\n"); + printf(" -r, --rcorr rmsd\n"); printf(" -v, --vcorr velocity correlation function\n"); printf(" -d, --dcorr dipole correlation function\n"); printf(" -l, --lcorr Lengendre correlation function\n"); @@ -81,7 +80,6 @@ cmdline_parser (int argc, char * const *argv, struct g args_info->sele1_given = 0 ; args_info->sele2_given = 0 ; args_info->order_given = 0 ; - args_info->rmsd_given = 0 ; args_info->rcorr_given = 0 ; args_info->vcorr_given = 0 ; args_info->dcorr_given = 0 ; @@ -113,7 +111,6 @@ cmdline_parser (int argc, char * const *argv, struct g { "sele1", 1, NULL, 0 }, { "sele2", 1, NULL, 0 }, { "order", 1, NULL, 0 }, - { "rmsd", 0, NULL, 'm' }, { "rcorr", 0, NULL, 'r' }, { "vcorr", 0, NULL, 'v' }, { "dcorr", 0, NULL, 'd' }, @@ -122,7 +119,7 @@ cmdline_parser (int argc, char * const *argv, struct g }; stop_char = 0; - c = getopt_long (argc, argv, "hVi:o:mrvdl", long_options, &option_index); + c = getopt_long (argc, argv, "hVi:o:rvdl", long_options, &option_index); if (c == -1) break; /* Exit from `while (1)' loop. */ @@ -160,18 +157,7 @@ cmdline_parser (int argc, char * const *argv, struct g args_info->output_arg = gengetopt_strdup (optarg); break; - case 'm': /* rmsd. */ - if (args_info->rmsd_given) - { - fprintf (stderr, "%s: `--rmsd' (`-m') option given more than once\n", CMDLINE_PARSER_PACKAGE); - clear_args (); - exit (EXIT_FAILURE); - } - args_info->rmsd_given = 1; - dynamicProps_group_counter += 1; - break; - - case 'r': /* position correlation function. */ + case 'r': /* rmsd. */ if (args_info->rcorr_given) { fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);