--- trunk/src/applications/dynamicProps/DynamicPropsCmd.h	2011/05/19 14:28:04	1565
+++ trunk/src/applications/dynamicProps/DynamicPropsCmd.h	2014/06/01 19:28:44	2003
@@ -1,12 +1,12 @@
-/** @file cmdline.h
+/** @file DynamicPropsCmd.h
  *  @brief The header file for the command line option parser
  *  generated by GNU Gengetopt version 2.22.4
  *  http://www.gnu.org/software/gengetopt.
  *  DO NOT modify this file, since it can be overwritten
  *  @author GNU Gengetopt by Lorenzo Bettini */
 
-#ifndef CMDLINE_H
-#define CMDLINE_H
+#ifndef DYNAMICPROPSCMD_H
+#define DYNAMICPROPSCMD_H
 
 /* If we use autoconf.  */
 #ifdef HAVE_CONFIG_H
@@ -54,15 +54,28 @@ struct gengetopt_args_info
   int order_arg;	/**< @brief Lengendre Polynomial Order.  */
   char * order_orig;	/**< @brief Lengendre Polynomial Order original value given at command line.  */
   const char *order_help; /**< @brief Lengendre Polynomial Order help description.  */
+  int nzbins_arg;	/**< @brief Number of Z bins (default='100').  */
+  char * nzbins_orig;	/**< @brief Number of Z bins original value given at command line.  */
+  const char *nzbins_help; /**< @brief Number of Z bins help description.  */
+  char * memory_arg;	/**< @brief Available memory (defaults to 2G) (default='2G').  */
+  char * memory_orig;	/**< @brief Available memory (defaults to 2G) original value given at command line.  */
+  const char *memory_help; /**< @brief Available memory (defaults to 2G) help description.  */
+  const char *selecorr_help; /**< @brief selection correlation function help description.  */
   const char *rcorr_help; /**< @brief rmsd help description.  */
   const char *vcorr_help; /**< @brief velocity correlation function help description.  */
   const char *dcorr_help; /**< @brief dipole correlation function help description.  */
   const char *lcorr_help; /**< @brief Lengendre correlation function help description.  */
+  const char *lcorrZ_help; /**< @brief Lengendre correlation function binned by Z help description.  */
+  const char *cohZ_help; /**< @brief Lengendre correlation function for OH bond vectors binned by Z help description.  */
+  const char *sdcorr_help; /**< @brief System dipole correlation function help description.  */
   const char *r_rcorr_help; /**< @brief Radial rmsd help description.  */
   const char *thetacorr_help; /**< @brief Angular rmsd help description.  */
   const char *drcorr_help; /**< @brief Directional rmsd for particles with unit vectors help description.  */
   const char *helfandEcorr_help; /**< @brief Helfand moment for thermal conductvity help description.  */
+  const char *momentum_help; /**< @brief Helfand momentum for viscosity help description.  */
   const char *stresscorr_help; /**< @brief Stress tensor correlation function help description.  */
+  const char *bondcorr_help; /**< @brief Bond extension correlation function help description.  */
+  const char *freqfluccorr_help; /**< @brief Frequency Fluctuation correlation function help description.  */
   
   unsigned int help_given ;	/**< @brief Whether help was given.  */
   unsigned int version_given ;	/**< @brief Whether version was given.  */
@@ -71,16 +84,27 @@ struct gengetopt_args_info
   unsigned int sele1_given ;	/**< @brief Whether sele1 was given.  */
   unsigned int sele2_given ;	/**< @brief Whether sele2 was given.  */
   unsigned int order_given ;	/**< @brief Whether order was given.  */
+  unsigned int nzbins_given ;	/**< @brief Whether nzbins was given.  */
+  unsigned int memory_given ;	/**< @brief Whether memory was given.  */
+  unsigned int selecorr_given ;	/**< @brief Whether selecorr was given.  */
   unsigned int rcorr_given ;	/**< @brief Whether rcorr was given.  */
   unsigned int vcorr_given ;	/**< @brief Whether vcorr was given.  */
   unsigned int dcorr_given ;	/**< @brief Whether dcorr was given.  */
   unsigned int lcorr_given ;	/**< @brief Whether lcorr was given.  */
+  unsigned int lcorrZ_given ;	/**< @brief Whether lcorrZ was given.  */
+  unsigned int cohZ_given ;	/**< @brief Whether cohZ was given.  */
+  unsigned int sdcorr_given ;	/**< @brief Whether sdcorr was given.  */
   unsigned int r_rcorr_given ;	/**< @brief Whether r_rcorr was given.  */
   unsigned int thetacorr_given ;	/**< @brief Whether thetacorr was given.  */
   unsigned int drcorr_given ;	/**< @brief Whether drcorr was given.  */
   unsigned int helfandEcorr_given ;	/**< @brief Whether helfandEcorr was given.  */
+  unsigned int momentum_given ;	/**< @brief Whether momentum was given.  */
   unsigned int stresscorr_given ;	/**< @brief Whether stresscorr was given.  */
+  unsigned int bondcorr_given ;	/**< @brief Whether bondcorr was given.  */
+  unsigned int freqfluccorr_given ;	/**< @brief Whether freqfluccorr was given.  */
 
+  char **inputs ; /**< @brief unamed options (options without names) */
+  unsigned inputs_num ; /**< @brief unamed options number */
   int dynamicProps_group_counter; /**< @brief Counter for group dynamicProps */
 } ;
 
@@ -207,4 +231,4 @@ int cmdline_parser_required (struct gengetopt_args_inf
 #ifdef __cplusplus
 }
 #endif /* __cplusplus */
-#endif /* CMDLINE_H */
+#endif /* DYNAMICPROPSCMD_H */