| 39 | 
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 * such damages. | 
| 40 | 
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 */ | 
| 41 | 
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#include "applications/hydrodynamics/ShapeBuilder.hpp" | 
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#include "applications/hydrodynamics/Spheric.hpp" | 
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#include "applications/hydrodynamics/Ellipsoid.hpp" | 
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#include "hydrodynamics/Sphere.hpp" | 
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#include "hydrodynamics/Ellipsoid.hpp" | 
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#include "applications/hydrodynamics/CompositeShape.hpp" | 
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namespace oopse { | 
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 | 
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Shape* ShapeBuilder::createShape(StuntDouble* sd) { | 
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   | 
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  Shape* ShapeBuilder::createShape(StuntDouble* sd) { | 
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    Shape* currShape = NULL; | 
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            if (sd->isDirectionalAtom()) { | 
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              currShape = internalCreateShape(static_cast<DirectionalAtom*>(sd)); | 
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            } else if (sd->isAtom()) { | 
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                currShape = internalCreateShape(static_cast<Atom*>(sd)); | 
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            } else if (sd->isRigidBody()) { | 
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                currShape = internalCreateShape(static_cast<RigidBody*>(sd)); | 
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            } | 
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             | 
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 | 
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         | 
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        return currShape; | 
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 | 
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} | 
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 | 
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Shape* ShapeBuilder::internalCreateShape(Atom* atom) { | 
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    if (sd->isDirectionalAtom()) { | 
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      currShape = internalCreateShape(static_cast<DirectionalAtom*>(sd)); | 
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> | 
    } else if (sd->isAtom()) { | 
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> | 
      currShape = internalCreateShape(static_cast<Atom*>(sd)); | 
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> | 
    } else if (sd->isRigidBody()) { | 
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> | 
      currShape = internalCreateShape(static_cast<RigidBody*>(sd)); | 
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    }        | 
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    return currShape;    | 
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  } | 
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   | 
| 59 | 
> | 
  Shape* ShapeBuilder::internalCreateShape(Atom* atom) { | 
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    AtomType* atomType = atom->getAtomType(); | 
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    Shape* currShape = NULL; | 
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    if (atomType->isLennardJones()){ | 
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        GenericData* data = atomType->getPropertyByName("LennardJones"); | 
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        if (data != NULL) { | 
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            LJParamGenericData* ljData = dynamic_cast<LJParamGenericData*>(data); | 
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 | 
| 67 | 
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            if (ljData != NULL) { | 
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                LJParam ljParam = ljData->getData(); | 
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                currShape = new Spheric(atom->getPos(), ljParam.sigma/2.0); | 
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      GenericData* data = atomType->getPropertyByName("LennardJones"); | 
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      if (data != NULL) { | 
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        LJParamGenericData* ljData = dynamic_cast<LJParamGenericData*>(data); | 
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         | 
| 67 | 
> | 
        if (ljData != NULL) { | 
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          LJParam ljParam = ljData->getData(); | 
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          currShape = new Sphere(atom->getPos(), ljParam.sigma/2.0); | 
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        } else { | 
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            sprintf( painCave.errMsg, | 
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            "Can not cast GenericData to LJParam\n"); | 
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            painCave.severity = OOPSE_ERROR; | 
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            painCave.isFatal = 1; | 
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            simError();           | 
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            }        | 
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        } | 
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 | 
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          sprintf( painCave.errMsg, | 
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                   "Can not cast GenericData to LJParam\n"); | 
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          painCave.severity = OOPSE_ERROR; | 
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          painCave.isFatal = 1; | 
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          simError();           | 
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        }        | 
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      } | 
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    } else { | 
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      int obanum = etab.GetAtomicNum((atom->getType()).c_str()); | 
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> | 
      if (obanum != 0) { | 
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        currShape = new Sphere(atom->getPos(), etab.GetVdwRad(obanum)); | 
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      } else { | 
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        sprintf( painCave.errMsg, | 
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                 "Could not find atom type in default element.txt\n"); | 
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        painCave.severity = OOPSE_ERROR; | 
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        painCave.isFatal = 1; | 
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        simError();           | 
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      } | 
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    } | 
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 | 
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    return currShape; | 
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} | 
| 92 | 
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 | 
| 93 | 
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Shape* ShapeBuilder::internalCreateShape(DirectionalAtom* datom) { | 
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  } | 
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> | 
   | 
| 93 | 
> | 
  Shape* ShapeBuilder::internalCreateShape(DirectionalAtom* datom) { | 
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  | 
    AtomType* atomType = datom->getAtomType(); | 
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  | 
    Shape* currShape = NULL; | 
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  | 
    if (atomType->isGayBerne()) { | 
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        DirectionalAtomType* dAtomType = dynamic_cast<DirectionalAtomType*>(atomType); | 
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 | 
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        GenericData* data = dAtomType->getPropertyByName("GayBerne"); | 
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        if (data != NULL) { | 
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            GayBerneParamGenericData* gayBerneData = dynamic_cast<GayBerneParamGenericData*>(data); | 
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 | 
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            if (gayBerneData != NULL) {   | 
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                GayBerneParam gayBerneParam = gayBerneData->getData(); | 
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                currShape = new Ellipsoid(datom->getPos(), gayBerneParam.GB_sigma/2.0, gayBerneParam.GB_l2b_ratio*gayBerneParam.GB_sigma/2.0, datom->getA()); | 
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            } else { | 
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                sprintf( painCave.errMsg, | 
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                       "Can not cast GenericData to GayBerneParam\n"); | 
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                painCave.severity = OOPSE_ERROR; | 
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                painCave.isFatal = 1; | 
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                simError();    | 
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            } | 
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      DirectionalAtomType* dAtomType = dynamic_cast<DirectionalAtomType*>(atomType); | 
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       | 
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      GenericData* data = dAtomType->getPropertyByName("GayBerne"); | 
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> | 
      if (data != NULL) { | 
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        GayBerneParamGenericData* gayBerneData = dynamic_cast<GayBerneParamGenericData*>(data); | 
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         | 
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        if (gayBerneData != NULL) {   | 
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          GayBerneParam gayBerneParam = gayBerneData->getData(); | 
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          currShape = new Ellipsoid(datom->getPos(), gayBerneParam.GB_sigma/2.0, gayBerneParam.GB_l2b_ratio*gayBerneParam.GB_sigma/2.0, datom->getA()); | 
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        } else { | 
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          sprintf( painCave.errMsg, "Can not find Parameters for GayBerne\n"); | 
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          painCave.severity = OOPSE_ERROR; | 
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          painCave.isFatal = 1; | 
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          simError();     | 
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        }             | 
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    }else if (atomType->isLennardJones()){ | 
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        GenericData* data = atomType->getPropertyByName("LennardJones"); | 
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        if (data != NULL) { | 
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            LJParamGenericData* ljData = dynamic_cast<LJParamGenericData*>(data); | 
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 | 
| 117 | 
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            if (ljData != NULL) { | 
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                LJParam ljParam = ljData->getData(); | 
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                currShape = new Spheric(datom->getPos(), ljParam.sigma/2.0); | 
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          sprintf( painCave.errMsg, | 
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                   "Can not cast GenericData to GayBerneParam\n"); | 
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          painCave.severity = OOPSE_ERROR; | 
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          painCave.isFatal = 1; | 
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          simError();    | 
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        } | 
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      } else { | 
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        sprintf( painCave.errMsg, "Can not find Parameters for GayBerne\n"); | 
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        painCave.severity = OOPSE_ERROR; | 
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        painCave.isFatal = 1; | 
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        simError();     | 
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      }             | 
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> | 
    } else if (atomType->isLennardJones()) { | 
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      GenericData* data = atomType->getPropertyByName("LennardJones"); | 
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      if (data != NULL) { | 
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        LJParamGenericData* ljData = dynamic_cast<LJParamGenericData*>(data); | 
| 123 | 
> | 
         | 
| 124 | 
> | 
        if (ljData != NULL) { | 
| 125 | 
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          LJParam ljParam = ljData->getData(); | 
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          currShape = new Sphere(datom->getPos(), ljParam.sigma/2.0); | 
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  | 
        } else { | 
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            sprintf( painCave.errMsg, | 
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            "Can not cast GenericData to LJParam\n"); | 
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            painCave.severity = OOPSE_ERROR; | 
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            painCave.isFatal = 1; | 
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            simError();           | 
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            }        | 
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          sprintf( painCave.errMsg, | 
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                   "Can not cast GenericData to LJParam\n"); | 
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          painCave.severity = OOPSE_ERROR; | 
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          painCave.isFatal = 1; | 
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          simError();           | 
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        }        | 
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> | 
      } else { | 
| 135 | 
> | 
        int obanum = etab.GetAtomicNum((datom->getType()).c_str()); | 
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> | 
        if (obanum != 0) { | 
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> | 
          currShape = new Sphere(datom->getPos(), etab.GetVdwRad(obanum)); | 
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        } else { | 
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          sprintf( painCave.errMsg, | 
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                   "Could not find atom type in default element.txt\n"); | 
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          painCave.severity = OOPSE_ERROR; | 
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          painCave.isFatal = 1; | 
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> | 
          simError();           | 
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        } | 
| 145 | 
< | 
 | 
| 145 | 
> | 
      }       | 
| 146 | 
  | 
    } | 
| 147 | 
  | 
    return currShape; | 
| 148 | 
< | 
} | 
| 134 | 
< | 
Shape* ShapeBuilder::internalCreateShape(RigidBody* rb) { | 
| 148 | 
> | 
  } | 
| 149 | 
  | 
 | 
| 150 | 
< | 
        std::vector<Atom*>::iterator ai;  | 
| 151 | 
< | 
        CompositeShape* compositeShape = new CompositeShape; | 
| 152 | 
< | 
        Atom* atom; | 
| 153 | 
< | 
        for (atom = rb->beginAtom(ai); atom != NULL; atom = rb->nextAtom(ai)) { | 
| 154 | 
< | 
            Shape* currShape = NULL; | 
| 155 | 
< | 
            if (atom->isDirectionalAtom()){ | 
| 156 | 
< | 
                currShape = internalCreateShape(static_cast<DirectionalAtom*>(atom)); | 
| 157 | 
< | 
            }else if (atom->isAtom()){ | 
| 158 | 
< | 
                currShape =  internalCreateShape(static_cast<Atom*>(atom)); | 
| 159 | 
< | 
            } | 
| 160 | 
< | 
            if (currShape != NULL) | 
| 161 | 
< | 
                compositeShape->addShape(currShape); | 
| 162 | 
< | 
        } | 
| 163 | 
< | 
 | 
| 164 | 
< | 
        return compositeShape; | 
| 150 | 
> | 
  Shape* ShapeBuilder::internalCreateShape(RigidBody* rb) { | 
| 151 | 
> | 
     | 
| 152 | 
> | 
    std::vector<Atom*>::iterator ai;  | 
| 153 | 
> | 
    CompositeShape* compositeShape = new CompositeShape; | 
| 154 | 
> | 
    Atom* atom; | 
| 155 | 
> | 
    for (atom = rb->beginAtom(ai); atom != NULL; atom = rb->nextAtom(ai)) { | 
| 156 | 
> | 
      Shape* currShape = NULL; | 
| 157 | 
> | 
      if (atom->isDirectionalAtom()){ | 
| 158 | 
> | 
        currShape = internalCreateShape(static_cast<DirectionalAtom*>(atom)); | 
| 159 | 
> | 
      }else if (atom->isAtom()){ | 
| 160 | 
> | 
        currShape =  internalCreateShape(static_cast<Atom*>(atom)); | 
| 161 | 
> | 
      } | 
| 162 | 
> | 
      if (currShape != NULL) | 
| 163 | 
> | 
        compositeShape->addShape(currShape); | 
| 164 | 
> | 
    } | 
| 165 | 
> | 
     | 
| 166 | 
> | 
    return compositeShape; | 
| 167 | 
> | 
  }   | 
| 168 | 
  | 
} | 
| 152 | 
– | 
 | 
| 153 | 
– | 
} |