[ViewVC] Diff of: OpenMD/trunk/src/applications/randomBuilder/randomBuilder.cpp

Comparing trunk/src/applications/randomBuilder/randomBuilder.cpp (file contents):
Revision 1781 by gezelter, Mon May 10 17:28:26 2010 UTC vs.
Revision 1782 by gezelter, Wed Aug 22 02:28:28 2012 UTC

#	Line 35 \| Line 35
35		* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36		* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37		* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).
38	<	* [4] Vardeman & Gezelter, in progress (2009).
38	>	* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010).
39	>	* [4] , Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). *
40		*
40	–	*
41		* randomBuilder.cpp
42		*
43		* Created by Charles F. Vardeman II on 10 Apr 2006.
#	Line 77 \| Line 77 \| *int main(int argc, char argv []) {**
77
78		int main(int argc, char *argv []) {
79
80	–	// register force fields
81	–	registerForceFields();
80		registerLattice();
81
82		gengetopt_args_info args_info;
#	Line 317 \| Line 315 \| *int main(int argc, char argv []) {**
315		// Randomize a vector of ints:
316
317		vector<int> ids;
318	<	for (int i = 0; i < sites.size(); i++) ids.push_back(i);
318	>	for (unsigned int i = 0; i < sites.size(); i++) ids.push_back(i);
319		std::random_shuffle(ids.begin(), ids.end());
320
321		Molecule* mol;
#	Line 370 \| Line 368 \| void createMdFile(const std::string&oldMdFileName,
368
369		oldMdFile.getline(buffer, MAXLEN);
370
371	<	int i = 0;
371	>	unsigned int i = 0;
372		while (!oldMdFile.eof()) {
373
374		//correct molecule number
375		if (strstr(buffer, "nMol") != NULL) {
376	<	if(i<nMol.size()){
376	>	if (i<nMol.size()){
377		sprintf(buffer, "\tnMol = %i;", nMol.at(i));
378		newMdFile << buffer << std::endl;
379		i++;

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