| 54 |
|
const std::string& filename, |
| 55 |
|
const std::string& sele1, |
| 56 |
|
int nbins) |
| 57 |
< |
: StaticAnalyser(info, filename), selectionScript1_(sele1), |
| 58 |
< |
evaluator1_(info), seleMan1_(info), nBins_(nbins), info_(info) { |
| 57 |
> |
: StaticAnalyser(info, filename), info_(info), |
| 58 |
> |
selectionScript1_(sele1), seleMan1_(info_), evaluator1_(info_), |
| 59 |
> |
nBins_(nbins) { |
| 60 |
|
|
| 61 |
|
setOutputName(getPrefix(filename) + ".freqs"); |
| 62 |
|
|
| 163 |
|
Atom* atom2; |
| 164 |
|
StuntDouble* sd1; |
| 165 |
|
int ii, sdID, molID, sdID2; |
| 166 |
< |
RealType li; |
| 166 |
> |
RealType li(0.0); |
| 167 |
|
RealType sPot, s1, s2; |
| 168 |
|
RealType freqShift; |
| 169 |
|
std::string name; |
| 227 |
|
|
| 228 |
|
sPot = sd1->getSitePotential(); |
| 229 |
|
|
| 230 |
< |
// Subtract out the contribution from every other site on this molecule: |
| 230 |
> |
// Subtract out the contribution from every other site on this |
| 231 |
> |
// molecule: |
| 232 |
|
for(atom2 = mol->beginAtom(ai2); atom2 != NULL; |
| 233 |
|
atom2 = mol->nextAtom(ai2)) { |
| 234 |
|
|