| 35 |
|
* |
| 36 |
|
* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
| 37 |
|
* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
| 38 |
< |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
| 38 |
> |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008). |
| 39 |
|
* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
| 40 |
|
* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). |
| 41 |
|
*/ |
| 54 |
|
const string& sele1); |
| 55 |
|
P2OrderParameter(SimInfo* info, const string& filename, |
| 56 |
|
const string& sele1, const string& sele2); |
| 57 |
+ |
P2OrderParameter(SimInfo* info, const string& filename, |
| 58 |
+ |
const string& sele1, const int seleOffset); |
| 59 |
|
virtual void process(); |
| 60 |
|
|
| 61 |
|
private: |
| 71 |
|
Snapshot* currentSnapshot_; |
| 72 |
|
|
| 73 |
|
bool doVect_; |
| 74 |
+ |
bool doOffset_; |
| 75 |
|
string selectionScript1_; |
| 76 |
|
string selectionScript2_; |
| 77 |
|
SelectionManager seleMan1_; |
| 78 |
|
SelectionManager seleMan2_; |
| 79 |
|
SelectionEvaluator evaluator1_; |
| 80 |
|
SelectionEvaluator evaluator2_; |
| 81 |
+ |
int seleOffset_; |
| 82 |
+ |
|
| 83 |
|
vector<OrderParam> orderParams_; |
| 84 |
|
|
| 85 |
|
}; |