| 56 |  | #include "applications/staticProps/GofAngle2.hpp" | 
| 57 |  | #include "applications/staticProps/GofXyz.hpp" | 
| 58 |  | #include "applications/staticProps/P2OrderParameter.hpp" | 
| 59 | + | #include "applications/staticProps/SCDOrderParameter.hpp" | 
| 60 | + | #include "applications/staticProps/DensityPlot.hpp" | 
| 61 | + | #include "applications/staticProps/RhoZ.hpp" | 
| 62 | + | #include "applications/staticProps/Hxy.hpp" | 
| 63 |  |  | 
| 60 | – |  | 
| 64 |  | using namespace oopse; | 
| 65 |  |  | 
| 66 |  | int main(int argc, char* argv[]){ | 
| 91 |  | char*  sele1Env= getenv("OOPSE_SELE1"); | 
| 92 |  | if (sele1Env) { | 
| 93 |  | sele1 = sele1Env; | 
| 94 | < | }else { | 
| 94 | > | }else if (!args_info.scd_given) { | 
| 95 |  | sprintf( painCave.errMsg, | 
| 96 |  | "neither --sele1 option nor $OOPSE_SELE1 is set"); | 
| 97 |  | painCave.severity = OOPSE_ERROR; | 
| 106 |  | char* sele2Env = getenv("OOPSE_SELE2"); | 
| 107 |  | if (sele2Env) { | 
| 108 |  | sele2 = sele2Env; | 
| 109 | < | } else { | 
| 109 | > | } else if (args_info.density_given) { | 
| 110 | > | sele2 = "select all"; | 
| 111 | > | } else if(!args_info.scd_given && !args_info.density_given && !args_info.slab_density_given)  { | 
| 112 |  | sprintf( painCave.errMsg, | 
| 113 |  | "neither --sele2 option nor $OOPSE_SELE2 is set"); | 
| 114 |  | painCave.severity = OOPSE_ERROR; | 
| 117 |  | } | 
| 118 |  | } | 
| 119 |  |  | 
| 120 | + | bool batchMode; | 
| 121 | + | if (args_info.scd_given){ | 
| 122 | + | if (args_info.sele1_given && args_info.sele2_given && args_info.sele3_given) { | 
| 123 | + | batchMode = false; | 
| 124 | + | } else if (args_info.molname_given && args_info.begin_given && args_info.end_given) { | 
| 125 | + | if (args_info.begin_arg < 0 || args_info.end_arg < 0 || args_info.begin_arg > args_info.end_arg-2) { | 
| 126 | + | sprintf( painCave.errMsg, | 
| 127 | + | "below conditions are not satisfied:\n" | 
| 128 | + | "0 <= begin && 0<= end && begin <= end-2\n"); | 
| 129 | + | painCave.severity = OOPSE_ERROR; | 
| 130 | + | painCave.isFatal = 1; | 
| 131 | + | simError(); | 
| 132 | + | } | 
| 133 | + | batchMode = true; | 
| 134 | + | } else{ | 
| 135 | + | sprintf( painCave.errMsg, | 
| 136 | + | "either --sele1, --sele2, --sele3 are specified," | 
| 137 | + | " or --molname, --begin, --end are specified\n"); | 
| 138 | + | painCave.severity = OOPSE_ERROR; | 
| 139 | + | painCave.isFatal = 1; | 
| 140 | + | simError(); | 
| 141 | + |  | 
| 142 | + | } | 
| 143 | + | } | 
| 144 | + |  | 
| 145 |  | //parse md file and set up the system | 
| 146 |  | SimCreator creator; | 
| 147 |  | SimInfo* info = creator.createSim(mdFileName); | 
| 175 |  | } | 
| 176 |  | } else if (args_info.p2_given) { | 
| 177 |  | analyser  = new P2OrderParameter(info, dumpFileName, sele1, sele2); | 
| 178 | + | } else if (args_info.scd_given) { | 
| 179 | + | if (batchMode) { | 
| 180 | + | analyser  = new SCDOrderParameter(info, dumpFileName, args_info.molname_arg, | 
| 181 | + | args_info.begin_arg, args_info.end_arg); | 
| 182 | + | } else{ | 
| 183 | + | std::string sele3 = args_info.sele3_arg; | 
| 184 | + | analyser  = new SCDOrderParameter(info, dumpFileName, sele1, sele2, sele3); | 
| 185 | + | } | 
| 186 | + | }else if (args_info.density_given) { | 
| 187 | + | analyser= new DensityPlot(info, dumpFileName, sele1, sele2, maxLen, args_info.nrbins_arg); | 
| 188 | + | } else if (args_info.slab_density_given) { | 
| 189 | + | Mat3x3d hmat = info->getSnapshotManager()->getCurrentSnapshot()->getHmat(); | 
| 190 | + | analyser = new RhoZ(info, dumpFileName, sele1, hmat(2, 2), args_info.nrbins_arg); | 
| 191 | + | }else if (args_info.hxy_given) { | 
| 192 | + | analyser = new Hxy(info, dumpFileName, sele1, args_info.nbins_x_arg, args_info.nbins_y_arg, args_info.nrbins_arg); | 
| 193 |  | } | 
| 194 |  |  | 
| 195 |  | if (args_info.output_given) { |