| 111 |  |  | 
| 112 |  | //parse md file and set up the system | 
| 113 |  | SimCreator creator; | 
| 114 | < | SimInfo* info = creator.createSim(mdFileName); | 
| 114 | > | SimInfo* info = creator.createSim(mdFileName, false); | 
| 115 |  |  | 
| 116 |  | double maxLen; | 
| 117 |  | if (args_info.length_given) { | 
| 118 |  | maxLen = args_info.length_arg; | 
| 119 |  | } else { | 
| 120 | < | Mat3x3d hmat = info->getSnapshotManager()->getCurrentSnapshot()->getHmat(); | 
| 121 | < | maxLen = std::min(std::min(hmat(0, 0), hmat(1, 1)), hmat(2, 2)) /2 ; | 
| 120 | > | double rcut; | 
| 121 | > | double rsw; | 
| 122 | > | info->getCutoff(rcut, rsw); | 
| 123 | > | maxLen = rcut + rsw; | 
| 124 |  | } | 
| 125 |  |  | 
| 126 |  |  |