| 111 | 
  | 
 | 
| 112 | 
  | 
    //parse md file and set up the system | 
| 113 | 
  | 
    SimCreator creator; | 
| 114 | 
< | 
    SimInfo* info = creator.createSim(mdFileName, false); | 
| 114 | 
> | 
    SimInfo* info = creator.createSim(mdFileName); | 
| 115 | 
  | 
 | 
| 116 | 
  | 
    double maxLen; | 
| 117 | 
  | 
    if (args_info.length_given) { | 
| 118 | 
  | 
        maxLen = args_info.length_arg; | 
| 119 | 
  | 
    } else { | 
| 120 | 
< | 
        double rcut; | 
| 121 | 
< | 
        double rsw; | 
| 122 | 
< | 
        info->getCutoff(rcut, rsw); | 
| 123 | 
< | 
        maxLen = rcut + rsw;         | 
| 120 | 
> | 
        Mat3x3d hmat = info->getSnapshotManager()->getCurrentSnapshot()->getHmat(); | 
| 121 | 
> | 
        maxLen = std::min(std::min(hmat(0, 0), hmat(1, 1)), hmat(2, 2)) /2.0;         | 
| 122 | 
  | 
    } | 
| 123 | 
  | 
     | 
| 124 | 
  | 
 |