| 48 |
|
args_info->nbins_y_given = 0 ; |
| 49 |
|
args_info->nanglebins_given = 0 ; |
| 50 |
|
args_info->length_given = 0 ; |
| 51 |
– |
args_info->LegendreL_given = 0 ; |
| 51 |
|
args_info->rcut_given = 0 ; |
| 52 |
|
args_info->zoffset_given = 0 ; |
| 53 |
|
args_info->sele1_given = 0 ; |
| 90 |
|
args_info->nanglebins_arg = 50; |
| 91 |
|
args_info->nanglebins_orig = NULL; |
| 92 |
|
args_info->length_orig = NULL; |
| 94 |
– |
args_info->LegendreL_orig = NULL; |
| 93 |
|
args_info->rcut_orig = NULL; |
| 94 |
|
args_info->zoffset_arg = 0; |
| 95 |
|
args_info->zoffset_orig = NULL; |
| 129 |
|
printf("%s\n"," -y, --nbins_y=INT number of bins in y axis (default=`100')"); |
| 130 |
|
printf("%s\n"," -a, --nanglebins=INT number of bins for cos(angle) (default=`50')"); |
| 131 |
|
printf("%s\n"," --length=DOUBLE maximum length (Defaults to 1/2 smallest length \n of first frame)"); |
| 134 |
– |
printf("%s\n"," -l, --LegendreL=INT Order of Legendre Polynomial (used for Bond \n Order calculations)"); |
| 132 |
|
printf("%s\n"," -c, --rcut=DOUBLE cutoff radius (rcut)"); |
| 133 |
|
printf("%s\n"," -z, --zoffset=DOUBLE Where to set the zero for the slab_density \n calculation (default=`0')"); |
| 134 |
|
printf("%s\n"," --sele1=selection script select the first stuntdouble set"); |
| 139 |
|
printf("%s\n"," --begin=INT begin internal index"); |
| 140 |
|
printf("%s\n"," --end=INT end internal index"); |
| 141 |
|
printf("%s\n","\n Group: staticProps\n an option of this group is required"); |
| 142 |
< |
printf("%s\n"," --bo bond order parameter (--rcut and --LegendreL \n must be specified"); |
| 142 |
> |
printf("%s\n"," --bo bond order parameter (--rcut must be specified"); |
| 143 |
|
printf("%s\n"," -g, --gofr g(r)"); |
| 144 |
|
printf("%s\n"," --r_theta g(r, cos(theta))"); |
| 145 |
|
printf("%s\n"," --r_omega g(r, cos(omega))"); |
| 215 |
|
free (args_info->length_orig); /* free previous argument */ |
| 216 |
|
args_info->length_orig = 0; |
| 217 |
|
} |
| 221 |
– |
if (args_info->LegendreL_orig) |
| 222 |
– |
{ |
| 223 |
– |
free (args_info->LegendreL_orig); /* free previous argument */ |
| 224 |
– |
args_info->LegendreL_orig = 0; |
| 225 |
– |
} |
| 218 |
|
if (args_info->rcut_orig) |
| 219 |
|
{ |
| 220 |
|
free (args_info->rcut_orig); /* free previous argument */ |
| 365 |
|
fprintf(outfile, "%s\n", "length"); |
| 366 |
|
} |
| 367 |
|
} |
| 376 |
– |
if (args_info->LegendreL_given) { |
| 377 |
– |
if (args_info->LegendreL_orig) { |
| 378 |
– |
fprintf(outfile, "%s=\"%s\"\n", "LegendreL", args_info->LegendreL_orig); |
| 379 |
– |
} else { |
| 380 |
– |
fprintf(outfile, "%s\n", "LegendreL"); |
| 381 |
– |
} |
| 382 |
– |
} |
| 368 |
|
if (args_info->rcut_given) { |
| 369 |
|
if (args_info->rcut_orig) { |
| 370 |
|
fprintf(outfile, "%s=\"%s\"\n", "rcut", args_info->rcut_orig); |
| 612 |
|
{ "nbins_y", 1, NULL, 'y' }, |
| 613 |
|
{ "nanglebins", 1, NULL, 'a' }, |
| 614 |
|
{ "length", 1, NULL, 0 }, |
| 630 |
– |
{ "LegendreL", 1, NULL, 'l' }, |
| 615 |
|
{ "rcut", 1, NULL, 'c' }, |
| 616 |
|
{ "zoffset", 1, NULL, 'z' }, |
| 617 |
|
{ "sele1", 1, NULL, 0 }, |
| 637 |
|
}; |
| 638 |
|
|
| 639 |
|
stop_char = 0; |
| 640 |
< |
c = getopt_long (argc, argv, "hVi:o:n:b:x:y:a:l:c:z:gpsd", long_options, &option_index); |
| 640 |
> |
c = getopt_long (argc, argv, "hVi:o:n:b:x:y:a:c:z:gpsd", long_options, &option_index); |
| 641 |
|
|
| 642 |
|
if (c == -1) break; /* Exit from `while (1)' loop. */ |
| 643 |
|
|
| 787 |
|
if (args_info->nanglebins_orig) |
| 788 |
|
free (args_info->nanglebins_orig); /* free previous string */ |
| 789 |
|
args_info->nanglebins_orig = gengetopt_strdup (optarg); |
| 806 |
– |
break; |
| 807 |
– |
|
| 808 |
– |
case 'l': /* Order of Legendre Polynomial (used for Bond Order calculations). */ |
| 809 |
– |
if (local_args_info.LegendreL_given) |
| 810 |
– |
{ |
| 811 |
– |
fprintf (stderr, "%s: `--LegendreL' (`-l') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 812 |
– |
goto failure; |
| 813 |
– |
} |
| 814 |
– |
if (args_info->LegendreL_given && ! override) |
| 815 |
– |
continue; |
| 816 |
– |
local_args_info.LegendreL_given = 1; |
| 817 |
– |
args_info->LegendreL_given = 1; |
| 818 |
– |
args_info->LegendreL_arg = strtol (optarg, &stop_char, 0); |
| 819 |
– |
if (!(stop_char && *stop_char == '\0')) { |
| 820 |
– |
fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg); |
| 821 |
– |
goto failure; |
| 822 |
– |
} |
| 823 |
– |
if (args_info->LegendreL_orig) |
| 824 |
– |
free (args_info->LegendreL_orig); /* free previous string */ |
| 825 |
– |
args_info->LegendreL_orig = gengetopt_strdup (optarg); |
| 790 |
|
break; |
| 791 |
|
|
| 792 |
|
case 'c': /* cutoff radius (rcut). */ |
| 1049 |
|
free (args_info->end_orig); /* free previous string */ |
| 1050 |
|
args_info->end_orig = gengetopt_strdup (optarg); |
| 1051 |
|
} |
| 1052 |
< |
/* bond order parameter (--rcut and --LegendreL must be specified. */ |
| 1052 |
> |
/* bond order parameter (--rcut must be specified. */ |
| 1053 |
|
else if (strcmp (long_options[option_index].name, "bo") == 0) |
| 1054 |
|
{ |
| 1055 |
|
if (local_args_info.bo_given) |