| 44 |  | args_info->output_given = 0 ; | 
| 45 |  | args_info->step_given = 0 ; | 
| 46 |  | args_info->nrbins_given = 0 ; | 
| 47 | + | args_info->nbins_x_given = 0 ; | 
| 48 | + | args_info->nbins_y_given = 0 ; | 
| 49 |  | args_info->nanglebins_given = 0 ; | 
| 50 |  | args_info->length_given = 0 ; | 
| 51 |  | args_info->zoffset_given = 0 ; | 
| 65 |  | args_info->scd_given = 0 ; | 
| 66 |  | args_info->density_given = 0 ; | 
| 67 |  | args_info->slab_density_given = 0 ; | 
| 68 | + | args_info->hxy_given = 0 ; | 
| 69 |  | args_info->staticProps_group_counter = 0 ; | 
| 70 |  | } | 
| 71 |  |  | 
| 80 |  | args_info->step_orig = NULL; | 
| 81 |  | args_info->nrbins_arg = 100; | 
| 82 |  | args_info->nrbins_orig = NULL; | 
| 83 | + | args_info->nbins_x_arg = 100; | 
| 84 | + | args_info->nbins_x_orig = NULL; | 
| 85 | + | args_info->nbins_y_arg = 100; | 
| 86 | + | args_info->nbins_y_orig = NULL; | 
| 87 |  | args_info->nanglebins_arg = 50; | 
| 88 |  | args_info->nanglebins_orig = NULL; | 
| 89 |  | args_info->length_orig = NULL; | 
| 120 |  | printf("%s\n","  -i, --input=filename          input dump file"); | 
| 121 |  | printf("%s\n","  -o, --output=filename         output file name"); | 
| 122 |  | printf("%s\n","  -n, --step=INT                process every n frame  (default=`1')"); | 
| 123 | < | printf("%s\n","  -r, --nrbins=INT              number of bins for distance  (default=`100')"); | 
| 123 | > | printf("%s\n","  -x,  --nbins_x=INT              number of bins in x axis  (default=`100')"); | 
| 124 | > | printf("%s\n","  -y , --nbins_y=INT              number of bins in y axis  (default=`100')"); | 
| 125 | > | printf("%s\n","  -r, --nrbins=INT              number of bins for distance  (default=`100')"); | 
| 126 |  | printf("%s\n","  -a, --nanglebins=INT          number of bins for cos(angle)  (default=`50')"); | 
| 127 |  | printf("%s\n","  -l, --length=DOUBLE           maximum length (Defaults to 1/2 smallest length \n                                  of first frame)"); | 
| 128 |  | printf("%s\n","  -z, --zoffset=DOUBLE          Where to set the zero for the slab_density \n                                  calculation  (default=`0')"); | 
| 143 |  | printf("%s\n","      --scd                     scd order parameter(either --sele1, --sele2, \n                                  --sele3 are specified or --molname, --begin, \n                                  --end are specified)"); | 
| 144 |  | printf("%s\n","      --density                 density plot (--sele1 must be specified)"); | 
| 145 |  | printf("%s\n","      --slab_density            slab density (--sele1 must be specified)"); | 
| 146 | + | printf("%s\n","      --hxy            hxy (--sele1 must be specified)"); | 
| 147 |  |  | 
| 148 |  | } | 
| 149 |  |  | 
| 188 |  | free (args_info->nrbins_orig); /* free previous argument */ | 
| 189 |  | args_info->nrbins_orig = 0; | 
| 190 |  | } | 
| 191 | + | if (args_info->nbins_x_orig) | 
| 192 | + | { | 
| 193 | + | free (args_info->nbins_x_orig); /* free previous argument */ | 
| 194 | + | args_info->nbins_x_orig = 0; | 
| 195 | + | } | 
| 196 | + | if (args_info->nbins_y_orig) | 
| 197 | + | { | 
| 198 | + | free (args_info->nbins_y_orig); /* free previous argument */ | 
| 199 | + | args_info->nbins_y_orig = 0; | 
| 200 | + | } | 
| 201 | + |  | 
| 202 |  | if (args_info->nanglebins_orig) | 
| 203 |  | { | 
| 204 |  | free (args_info->nanglebins_orig); /* free previous argument */ | 
| 324 |  | fprintf(outfile, "%s=\"%s\"\n", "nrbins", args_info->nrbins_orig); | 
| 325 |  | } else { | 
| 326 |  | fprintf(outfile, "%s\n", "nrbins"); | 
| 327 | + | } | 
| 328 | + | } | 
| 329 | + | if (args_info->nbins_x_given) { | 
| 330 | + | if (args_info->nbins_x_orig) { | 
| 331 | + | fprintf(outfile, "%s=\"%s\"\n", "nbins_x", args_info->nbins_x_orig); | 
| 332 | + | } else { | 
| 333 | + | fprintf(outfile, "%s\n", "nbins_x"); | 
| 334 |  | } | 
| 335 |  | } | 
| 336 | + | if (args_info->nbins_y_given) { | 
| 337 | + | if (args_info->nbins_y_orig) { | 
| 338 | + | fprintf(outfile, "%s=\"%s\"\n", "nbins_y", args_info->nbins_y_orig); | 
| 339 | + | } else { | 
| 340 | + | fprintf(outfile, "%s\n", "nbins_y"); | 
| 341 | + | } | 
| 342 | + | } | 
| 343 |  | if (args_info->nanglebins_given) { | 
| 344 |  | if (args_info->nanglebins_orig) { | 
| 345 |  | fprintf(outfile, "%s=\"%s\"\n", "nanglebins", args_info->nanglebins_orig); | 
| 437 |  | if (args_info->slab_density_given) { | 
| 438 |  | fprintf(outfile, "%s\n", "slab_density"); | 
| 439 |  | } | 
| 440 | < |  | 
| 440 | > | if (args_info->hxy_given) { | 
| 441 | > | fprintf(outfile, "%s\n", "hxy"); | 
| 442 | > | } | 
| 443 |  | fclose (outfile); | 
| 444 |  |  | 
| 445 |  | i = EXIT_SUCCESS; | 
| 487 |  | args_info->scd_given = 0 ; | 
| 488 |  | args_info->density_given = 0 ; | 
| 489 |  | args_info->slab_density_given = 0 ; | 
| 490 | + | args_info->hxy_given= 0 ; | 
| 491 |  |  | 
| 492 |  | args_info->staticProps_group_counter = 0; | 
| 493 |  | } | 
| 600 |  | { "scd",        0, NULL, 0 }, | 
| 601 |  | { "density",    0, NULL, 0 }, | 
| 602 |  | { "slab_density",       0, NULL, 0 }, | 
| 603 | + | { "hxy",        0, NULL, 0 }, | 
| 604 |  | { NULL, 0, NULL, 0 } | 
| 605 |  | }; | 
| 606 |  |  | 
| 695 |  | if (args_info->nrbins_orig) | 
| 696 |  | free (args_info->nrbins_orig); /* free previous string */ | 
| 697 |  | args_info->nrbins_orig = gengetopt_strdup (optarg); | 
| 698 | + | break; | 
| 699 | + |  | 
| 700 | + | case 'x':       /* number of bins in x axis.  */ | 
| 701 | + | if (local_args_info.nbins_x_given) | 
| 702 | + | { | 
| 703 | + | fprintf (stderr, "%s: `--nbins_x' (`-r') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); | 
| 704 | + | goto failure; | 
| 705 | + | } | 
| 706 | + | if (args_info->nbins_x_given && ! override) | 
| 707 | + | continue; | 
| 708 | + | local_args_info.nbins_x_given = 1; | 
| 709 | + | args_info->nbins_x_given = 1; | 
| 710 | + | args_info->nbins_x_arg = strtol (optarg, &stop_char, 0); | 
| 711 | + | if (!(stop_char && *stop_char == '\0')) { | 
| 712 | + | fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg); | 
| 713 | + | goto failure; | 
| 714 | + | } | 
| 715 | + | if (args_info->nbins_x_orig) | 
| 716 | + | free (args_info->nbins_x_orig); /* free previous string */ | 
| 717 | + | args_info->nbins_x_orig = gengetopt_strdup (optarg); | 
| 718 |  | break; | 
| 719 |  |  | 
| 720 | + | case 'y':       /* number of bins in y axis.  */ | 
| 721 | + | if (local_args_info.nbins_y_given) | 
| 722 | + | { | 
| 723 | + | fprintf (stderr, "%s: `--nbins_y' (`-r') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); | 
| 724 | + | goto failure; | 
| 725 | + | } | 
| 726 | + | if (args_info->nbins_y_given && ! override) | 
| 727 | + | continue; | 
| 728 | + | local_args_info.nbins_y_given = 1; | 
| 729 | + | args_info->nbins_y_given = 1; | 
| 730 | + | args_info->nbins_y_arg = strtol (optarg, &stop_char, 0); | 
| 731 | + | if (!(stop_char && *stop_char == '\0')) { | 
| 732 | + | fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg); | 
| 733 | + | goto failure; | 
| 734 | + | } | 
| 735 | + | if (args_info->nbins_y_orig) | 
| 736 | + | free (args_info->nbins_y_orig); /* free previous string */ | 
| 737 | + | args_info->nbins_y_orig = gengetopt_strdup (optarg); | 
| 738 | + | break; | 
| 739 | + |  | 
| 740 |  | case 'a':       /* number of bins for cos(angle).  */ | 
| 741 |  | if (local_args_info.nanglebins_given) | 
| 742 |  | { | 
| 1084 |  | continue; | 
| 1085 |  | local_args_info.slab_density_given = 1; | 
| 1086 |  | args_info->slab_density_given = 1; | 
| 1087 | + | if (args_info->staticProps_group_counter && override) | 
| 1088 | + | reset_group_staticProps (args_info); | 
| 1089 | + | args_info->staticProps_group_counter += 1; | 
| 1090 | + | break; | 
| 1091 | + | } | 
| 1092 | + | /* hxy (--sele1 must be specified).  */ | 
| 1093 | + | else if (strcmp (long_options[option_index].name, "hxy") == 0) | 
| 1094 | + | { | 
| 1095 | + | if (local_args_info.hxy_given) | 
| 1096 | + | { | 
| 1097 | + | fprintf (stderr, "%s: `--hxy' option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); | 
| 1098 | + | goto failure; | 
| 1099 | + | } | 
| 1100 | + | if (args_info->hxy_given && ! override) | 
| 1101 | + | continue; | 
| 1102 | + | local_args_info.hxy_given = 1; | 
| 1103 | + | args_info->hxy_given = 1; | 
| 1104 |  | if (args_info->staticProps_group_counter && override) | 
| 1105 |  | reset_group_staticProps (args_info); | 
| 1106 |  | args_info->staticProps_group_counter += 1; |