| 21 | 
  | 
#define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */ | 
| 22 | 
  | 
#endif | 
| 23 | 
  | 
 | 
| 24 | 
+ | 
#ifdef WIN32 | 
| 25 | 
+ | 
#include "utils/wingetopt.h" | 
| 26 | 
+ | 
#else | 
| 27 | 
  | 
#include <getopt.h> | 
| 28 | 
+ | 
#endif | 
| 29 | 
  | 
 | 
| 30 | 
  | 
#include "StaticPropsCmd.h" | 
| 31 | 
  | 
 | 
| 85 | 
  | 
  "      --angle_r                 angle of R", | 
| 86 | 
  | 
  "      --hullvol                 hull volume of nanoparticle", | 
| 87 | 
  | 
  "      --rodlength               length of nanorod", | 
| 88 | 
< | 
  "  -Q, --tet_param               tetrahedrality order parameter", | 
| 89 | 
< | 
  "      --tet_param_z             tetrahedrality order parameter by zbin(--sele1 \n                                  must be specified)", | 
| 88 | 
> | 
  "  -Q, --tet_param               tetrahedrality order parameter (Qk)", | 
| 89 | 
> | 
  "      --tet_param_z             spatially-resolved tetrahedrality order \n                                  parameter Qk(z)", | 
| 90 | 
> | 
  "      --rnemdz                  slab-resolved RNEMD statistics (temperature, \n                                  density, velocity)", | 
| 91 | 
> | 
  "      --rnemdr                  shell-resolved RNEMD statistics (temperature, \n                                  density, angular velocity)", | 
| 92 | 
> | 
  "      --rnemdrt                 shell and angle-resolved RNEMD statistics \n                                  (temperature, density, angular velocity)", | 
| 93 | 
  | 
    0 | 
| 94 | 
  | 
}; | 
| 95 | 
  | 
 | 
| 167 | 
  | 
  args_info->rodlength_given = 0 ; | 
| 168 | 
  | 
  args_info->tet_param_given = 0 ; | 
| 169 | 
  | 
  args_info->tet_param_z_given = 0 ; | 
| 170 | 
+ | 
  args_info->rnemdz_given = 0 ; | 
| 171 | 
+ | 
  args_info->rnemdr_given = 0 ; | 
| 172 | 
+ | 
  args_info->rnemdrt_given = 0 ; | 
| 173 | 
  | 
  args_info->staticProps_group_counter = 0 ; | 
| 174 | 
  | 
} | 
| 175 | 
  | 
 | 
| 273 | 
  | 
  args_info->rodlength_help = gengetopt_args_info_help[48] ; | 
| 274 | 
  | 
  args_info->tet_param_help = gengetopt_args_info_help[49] ; | 
| 275 | 
  | 
  args_info->tet_param_z_help = gengetopt_args_info_help[50] ; | 
| 276 | 
+ | 
  args_info->rnemdz_help = gengetopt_args_info_help[51] ; | 
| 277 | 
+ | 
  args_info->rnemdr_help = gengetopt_args_info_help[52] ; | 
| 278 | 
+ | 
  args_info->rnemdrt_help = gengetopt_args_info_help[53] ; | 
| 279 | 
  | 
   | 
| 280 | 
  | 
} | 
| 281 | 
  | 
 | 
| 525 | 
  | 
    write_into_file(outfile, "tet_param", 0, 0 ); | 
| 526 | 
  | 
  if (args_info->tet_param_z_given) | 
| 527 | 
  | 
    write_into_file(outfile, "tet_param_z", 0, 0 ); | 
| 528 | 
+ | 
  if (args_info->rnemdz_given) | 
| 529 | 
+ | 
    write_into_file(outfile, "rnemdz", 0, 0 ); | 
| 530 | 
+ | 
  if (args_info->rnemdr_given) | 
| 531 | 
+ | 
    write_into_file(outfile, "rnemdr", 0, 0 ); | 
| 532 | 
+ | 
  if (args_info->rnemdrt_given) | 
| 533 | 
+ | 
    write_into_file(outfile, "rnemdrt", 0, 0 ); | 
| 534 | 
  | 
   | 
| 535 | 
  | 
 | 
| 536 | 
  | 
  i = EXIT_SUCCESS; | 
| 609 | 
  | 
  args_info->rodlength_given = 0 ; | 
| 610 | 
  | 
  args_info->tet_param_given = 0 ; | 
| 611 | 
  | 
  args_info->tet_param_z_given = 0 ; | 
| 612 | 
+ | 
  args_info->rnemdz_given = 0 ; | 
| 613 | 
+ | 
  args_info->rnemdr_given = 0 ; | 
| 614 | 
+ | 
  args_info->rnemdrt_given = 0 ; | 
| 615 | 
  | 
 | 
| 616 | 
  | 
  args_info->staticProps_group_counter = 0; | 
| 617 | 
  | 
} | 
| 907 | 
  | 
        { "rodlength",  0, NULL, 0 }, | 
| 908 | 
  | 
        { "tet_param",  0, NULL, 'Q' }, | 
| 909 | 
  | 
        { "tet_param_z",        0, NULL, 0 }, | 
| 910 | 
+ | 
        { "rnemdz",     0, NULL, 0 }, | 
| 911 | 
+ | 
        { "rnemdr",     0, NULL, 0 }, | 
| 912 | 
+ | 
        { "rnemdrt",    0, NULL, 0 }, | 
| 913 | 
  | 
        { 0,  0, 0, 0 } | 
| 914 | 
  | 
      }; | 
| 915 | 
  | 
 | 
| 1097 | 
  | 
            goto failure; | 
| 1098 | 
  | 
         | 
| 1099 | 
  | 
          break; | 
| 1100 | 
< | 
        case 'Q':       /* tetrahedrality order parameter.  */ | 
| 1100 | 
> | 
        case 'Q':       /* tetrahedrality order parameter (Qk).  */ | 
| 1101 | 
  | 
         | 
| 1102 | 
  | 
          if (args_info->staticProps_group_counter && override) | 
| 1103 | 
  | 
            reset_group_staticProps (args_info); | 
| 1633 | 
  | 
              goto failure; | 
| 1634 | 
  | 
           | 
| 1635 | 
  | 
          } | 
| 1636 | 
< | 
          /* tetrahedrality order parameter by zbin(--sele1 must be specified).  */ | 
| 1636 | 
> | 
          /* spatially-resolved tetrahedrality order parameter Qk(z).  */ | 
| 1637 | 
  | 
          else if (strcmp (long_options[option_index].name, "tet_param_z") == 0) | 
| 1638 | 
  | 
          { | 
| 1639 | 
  | 
           | 
| 1646 | 
  | 
                &(local_args_info.tet_param_z_given), optarg, 0, 0, ARG_NO, | 
| 1647 | 
  | 
                check_ambiguity, override, 0, 0, | 
| 1648 | 
  | 
                "tet_param_z", '-', | 
| 1649 | 
+ | 
                additional_error)) | 
| 1650 | 
+ | 
              goto failure; | 
| 1651 | 
+ | 
           | 
| 1652 | 
+ | 
          } | 
| 1653 | 
+ | 
          /* slab-resolved RNEMD statistics (temperature, density, velocity).  */ | 
| 1654 | 
+ | 
          else if (strcmp (long_options[option_index].name, "rnemdz") == 0) | 
| 1655 | 
+ | 
          { | 
| 1656 | 
+ | 
           | 
| 1657 | 
+ | 
            if (args_info->staticProps_group_counter && override) | 
| 1658 | 
+ | 
              reset_group_staticProps (args_info); | 
| 1659 | 
+ | 
            args_info->staticProps_group_counter += 1; | 
| 1660 | 
+ | 
           | 
| 1661 | 
+ | 
            if (update_arg( 0 ,  | 
| 1662 | 
+ | 
                 0 , &(args_info->rnemdz_given), | 
| 1663 | 
+ | 
                &(local_args_info.rnemdz_given), optarg, 0, 0, ARG_NO, | 
| 1664 | 
+ | 
                check_ambiguity, override, 0, 0, | 
| 1665 | 
+ | 
                "rnemdz", '-', | 
| 1666 | 
  | 
                additional_error)) | 
| 1667 | 
  | 
              goto failure; | 
| 1668 | 
  | 
           | 
| 1669 | 
  | 
          } | 
| 1670 | 
+ | 
          /* shell-resolved RNEMD statistics (temperature, density, angular velocity).  */ | 
| 1671 | 
+ | 
          else if (strcmp (long_options[option_index].name, "rnemdr") == 0) | 
| 1672 | 
+ | 
          { | 
| 1673 | 
  | 
           | 
| 1674 | 
+ | 
            if (args_info->staticProps_group_counter && override) | 
| 1675 | 
+ | 
              reset_group_staticProps (args_info); | 
| 1676 | 
+ | 
            args_info->staticProps_group_counter += 1; | 
| 1677 | 
+ | 
           | 
| 1678 | 
+ | 
            if (update_arg( 0 ,  | 
| 1679 | 
+ | 
                 0 , &(args_info->rnemdr_given), | 
| 1680 | 
+ | 
                &(local_args_info.rnemdr_given), optarg, 0, 0, ARG_NO, | 
| 1681 | 
+ | 
                check_ambiguity, override, 0, 0, | 
| 1682 | 
+ | 
                "rnemdr", '-', | 
| 1683 | 
+ | 
                additional_error)) | 
| 1684 | 
+ | 
              goto failure; | 
| 1685 | 
+ | 
           | 
| 1686 | 
+ | 
          } | 
| 1687 | 
+ | 
          /* shell and angle-resolved RNEMD statistics (temperature, density, angular velocity).  */ | 
| 1688 | 
+ | 
          else if (strcmp (long_options[option_index].name, "rnemdrt") == 0) | 
| 1689 | 
+ | 
          { | 
| 1690 | 
+ | 
           | 
| 1691 | 
+ | 
            if (args_info->staticProps_group_counter && override) | 
| 1692 | 
+ | 
              reset_group_staticProps (args_info); | 
| 1693 | 
+ | 
            args_info->staticProps_group_counter += 1; | 
| 1694 | 
+ | 
           | 
| 1695 | 
+ | 
            if (update_arg( 0 ,  | 
| 1696 | 
+ | 
                 0 , &(args_info->rnemdrt_given), | 
| 1697 | 
+ | 
                &(local_args_info.rnemdrt_given), optarg, 0, 0, ARG_NO, | 
| 1698 | 
+ | 
                check_ambiguity, override, 0, 0, | 
| 1699 | 
+ | 
                "rnemdrt", '-', | 
| 1700 | 
+ | 
                additional_error)) | 
| 1701 | 
+ | 
              goto failure; | 
| 1702 | 
+ | 
           | 
| 1703 | 
+ | 
          } | 
| 1704 | 
+ | 
           | 
| 1705 | 
  | 
          break; | 
| 1706 | 
  | 
        case '?':       /* Invalid option.  */ | 
| 1707 | 
  | 
          /* `getopt_long' already printed an error message.  */ |