| 1 | /* | 
| 2 | File autogenerated by gengetopt version 2.22 | 
| 3 | generated with the following command: | 
| 4 | gengetopt -F StaticPropsCmd -u | 
| 5 |  | 
| 6 | The developers of gengetopt consider the fixed text that goes in all | 
| 7 | gengetopt output files to be in the public domain: | 
| 8 | we make no copyright claims on it. | 
| 9 | */ | 
| 10 |  | 
| 11 | /* If we use autoconf.  */ | 
| 12 | #ifdef HAVE_CONFIG_H | 
| 13 | #include "config.h" | 
| 14 | #endif | 
| 15 |  | 
| 16 | #include <stdio.h> | 
| 17 | #include <stdlib.h> | 
| 18 | #include <string.h> | 
| 19 |  | 
| 20 | #include "getopt.h" | 
| 21 |  | 
| 22 | #include "StaticPropsCmd.h" | 
| 23 |  | 
| 24 | const char *gengetopt_args_info_purpose = ""; | 
| 25 |  | 
| 26 | const char *gengetopt_args_info_usage = "Usage: StaticProps [OPTIONS]... [FILES]..."; | 
| 27 |  | 
| 28 | const char *gengetopt_args_info_description = ""; | 
| 29 |  | 
| 30 | const char *gengetopt_args_info_help[] = { | 
| 31 | "  -h, --help                    Print help and exit", | 
| 32 | "  -V, --version                 Print version and exit", | 
| 33 | "  -i, --input=filename          input dump file", | 
| 34 | "  -o, --output=filename         output file name", | 
| 35 | "  -n, --step=INT                process every n frame  (default=`1')", | 
| 36 | "  -b, --nbins=INT               number of bins (general purpose)  \n                                  (default=`100')", | 
| 37 | "  -x, --nbins_x=INT             number of bins in x axis  (default=`100')", | 
| 38 | "  -y, --nbins_y=INT             number of bins in y axis  (default=`100')", | 
| 39 | "      --nbins_z=INT             number of bins in z axis  (default=`100')", | 
| 40 | "  -a, --nanglebins=INT          number of bins for cos(angle)  (default=`50')", | 
| 41 | "  -c, --rcut=DOUBLE             cutoff radius (rcut)", | 
| 42 | "      --dz=DOUBLE               slab width (dz)", | 
| 43 | "      --length=DOUBLE           maximum length (Defaults to 1/2 smallest length \n                                  of first frame)", | 
| 44 | "      --zlength=DOUBLE          maximum length (Defaults to 1/2 smallest length \n                                  of first frame)", | 
| 45 | "  -z, --zoffset=DOUBLE          Where to set the zero for the slab_density \n                                  calculation  (default=`0')", | 
| 46 | "      --sele1=selection script  select the first stuntdouble set", | 
| 47 | "      --sele2=selection script  select the second stuntdouble set", | 
| 48 | "      --sele3=selection script  select the third stuntdouble set", | 
| 49 | "      --refsele=selection script\n                                select reference (use and only use with --gxyz)", | 
| 50 | "      --comsele=selection script\n                                select stunt doubles for center-of-mass \n                                  reference point", | 
| 51 | "      --molname=STRING          molecule name", | 
| 52 | "      --begin=INT               begin internal index", | 
| 53 | "      --end=INT                 end internal index", | 
| 54 | "      --radius=DOUBLE           nanoparticle radius", | 
| 55 | "\n Group: staticProps\n   an option of this group is required", | 
| 56 | "      --bo                      bond order parameter (--rcut must be specified)", | 
| 57 | "      --bor                     bond order parameter as a function of radius \n                                  (--rcut must be specified)", | 
| 58 | "      --bad                     N(theta) bond angle density within (--rcut must \n                                  be specified)", | 
| 59 | "  -g, --gofr                    g(r)", | 
| 60 | "      --gofz                    g(z)", | 
| 61 | "      --r_theta                 g(r, cos(theta))", | 
| 62 | "      --r_omega                 g(r, cos(omega))", | 
| 63 | "      --r_z                     g(r, z)", | 
| 64 | "      --theta_omega             g(cos(theta), cos(omega))", | 
| 65 | "      --gxyz                    g(x, y, z)", | 
| 66 | "      --twodgofr                2D g(r) (Slab width --dz must be specified)", | 
| 67 | "  -p, --p2                      p2 order parameter (--sele1 and --sele2 must be \n                                  specified)", | 
| 68 | "      --rp2                     rp2 order parameter (--sele1 and --sele2 must \n                                  be specified)", | 
| 69 | "  -s, --scd                     scd order parameter (either --sele1, --sele2, \n                                  --sele3 are specified or --molname, --begin, \n                                  --end are specified)", | 
| 70 | "  -d, --density                 density plot", | 
| 71 | "      --slab_density            slab density", | 
| 72 | "      --p_angle                 p(cos(theta))", | 
| 73 | "      --hxy                     hxy", | 
| 74 | "      --rho_r                   rho of R", | 
| 75 | "      --hullvol                 hull volume of nanoparticle", | 
| 76 | 0 | 
| 77 | }; | 
| 78 |  | 
| 79 | typedef enum {ARG_NO | 
| 80 | , ARG_STRING | 
| 81 | , ARG_INT | 
| 82 | , ARG_DOUBLE | 
| 83 | } cmdline_parser_arg_type; | 
| 84 |  | 
| 85 | static | 
| 86 | void clear_given (struct gengetopt_args_info *args_info); | 
| 87 | static | 
| 88 | void clear_args (struct gengetopt_args_info *args_info); | 
| 89 |  | 
| 90 | static int | 
| 91 | cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, | 
| 92 | struct cmdline_parser_params *params, const char *additional_error); | 
| 93 |  | 
| 94 | static int | 
| 95 | cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error); | 
| 96 |  | 
| 97 | static char * | 
| 98 | gengetopt_strdup (const char *s); | 
| 99 |  | 
| 100 | static | 
| 101 | void clear_given (struct gengetopt_args_info *args_info) | 
| 102 | { | 
| 103 | args_info->help_given = 0 ; | 
| 104 | args_info->version_given = 0 ; | 
| 105 | args_info->input_given = 0 ; | 
| 106 | args_info->output_given = 0 ; | 
| 107 | args_info->step_given = 0 ; | 
| 108 | args_info->nbins_given = 0 ; | 
| 109 | args_info->nbins_x_given = 0 ; | 
| 110 | args_info->nbins_y_given = 0 ; | 
| 111 | args_info->nbins_z_given = 0 ; | 
| 112 | args_info->nanglebins_given = 0 ; | 
| 113 | args_info->rcut_given = 0 ; | 
| 114 | args_info->dz_given = 0 ; | 
| 115 | args_info->length_given = 0 ; | 
| 116 | args_info->zlength_given = 0 ; | 
| 117 | args_info->zoffset_given = 0 ; | 
| 118 | args_info->sele1_given = 0 ; | 
| 119 | args_info->sele2_given = 0 ; | 
| 120 | args_info->sele3_given = 0 ; | 
| 121 | args_info->refsele_given = 0 ; | 
| 122 | args_info->comsele_given = 0 ; | 
| 123 | args_info->molname_given = 0 ; | 
| 124 | args_info->begin_given = 0 ; | 
| 125 | args_info->end_given = 0 ; | 
| 126 | args_info->radius_given = 0 ; | 
| 127 | args_info->bo_given = 0 ; | 
| 128 | args_info->bor_given = 0 ; | 
| 129 | args_info->bad_given = 0 ; | 
| 130 | args_info->gofr_given = 0 ; | 
| 131 | args_info->gofz_given = 0 ; | 
| 132 | args_info->r_theta_given = 0 ; | 
| 133 | args_info->r_omega_given = 0 ; | 
| 134 | args_info->r_z_given = 0 ; | 
| 135 | args_info->theta_omega_given = 0 ; | 
| 136 | args_info->gxyz_given = 0 ; | 
| 137 | args_info->twodgofr_given = 0 ; | 
| 138 | args_info->p2_given = 0 ; | 
| 139 | args_info->rp2_given = 0 ; | 
| 140 | args_info->scd_given = 0 ; | 
| 141 | args_info->density_given = 0 ; | 
| 142 | args_info->slab_density_given = 0 ; | 
| 143 | args_info->p_angle_given = 0 ; | 
| 144 | args_info->hxy_given = 0 ; | 
| 145 | args_info->rho_r_given = 0 ; | 
| 146 | args_info->hullvol_given = 0 ; | 
| 147 | args_info->staticProps_group_counter = 0 ; | 
| 148 | } | 
| 149 |  | 
| 150 | static | 
| 151 | void clear_args (struct gengetopt_args_info *args_info) | 
| 152 | { | 
| 153 | args_info->input_arg = NULL; | 
| 154 | args_info->input_orig = NULL; | 
| 155 | args_info->output_arg = NULL; | 
| 156 | args_info->output_orig = NULL; | 
| 157 | args_info->step_arg = 1; | 
| 158 | args_info->step_orig = NULL; | 
| 159 | args_info->nbins_arg = 100; | 
| 160 | args_info->nbins_orig = NULL; | 
| 161 | args_info->nbins_x_arg = 100; | 
| 162 | args_info->nbins_x_orig = NULL; | 
| 163 | args_info->nbins_y_arg = 100; | 
| 164 | args_info->nbins_y_orig = NULL; | 
| 165 | args_info->nbins_z_arg = 100; | 
| 166 | args_info->nbins_z_orig = NULL; | 
| 167 | args_info->nanglebins_arg = 50; | 
| 168 | args_info->nanglebins_orig = NULL; | 
| 169 | args_info->rcut_orig = NULL; | 
| 170 | args_info->dz_orig = NULL; | 
| 171 | args_info->length_orig = NULL; | 
| 172 | args_info->zlength_orig = NULL; | 
| 173 | args_info->zoffset_arg = 0; | 
| 174 | args_info->zoffset_orig = NULL; | 
| 175 | args_info->sele1_arg = NULL; | 
| 176 | args_info->sele1_orig = NULL; | 
| 177 | args_info->sele2_arg = NULL; | 
| 178 | args_info->sele2_orig = NULL; | 
| 179 | args_info->sele3_arg = NULL; | 
| 180 | args_info->sele3_orig = NULL; | 
| 181 | args_info->refsele_arg = NULL; | 
| 182 | args_info->refsele_orig = NULL; | 
| 183 | args_info->comsele_arg = NULL; | 
| 184 | args_info->comsele_orig = NULL; | 
| 185 | args_info->molname_arg = NULL; | 
| 186 | args_info->molname_orig = NULL; | 
| 187 | args_info->begin_orig = NULL; | 
| 188 | args_info->end_orig = NULL; | 
| 189 | args_info->radius_orig = NULL; | 
| 190 |  | 
| 191 | } | 
| 192 |  | 
| 193 | static | 
| 194 | void init_args_info(struct gengetopt_args_info *args_info) | 
| 195 | { | 
| 196 |  | 
| 197 |  | 
| 198 | args_info->help_help = gengetopt_args_info_help[0] ; | 
| 199 | args_info->version_help = gengetopt_args_info_help[1] ; | 
| 200 | args_info->input_help = gengetopt_args_info_help[2] ; | 
| 201 | args_info->output_help = gengetopt_args_info_help[3] ; | 
| 202 | args_info->step_help = gengetopt_args_info_help[4] ; | 
| 203 | args_info->nbins_help = gengetopt_args_info_help[5] ; | 
| 204 | args_info->nbins_x_help = gengetopt_args_info_help[6] ; | 
| 205 | args_info->nbins_y_help = gengetopt_args_info_help[7] ; | 
| 206 | args_info->nbins_z_help = gengetopt_args_info_help[8] ; | 
| 207 | args_info->nanglebins_help = gengetopt_args_info_help[9] ; | 
| 208 | args_info->rcut_help = gengetopt_args_info_help[10] ; | 
| 209 | args_info->dz_help = gengetopt_args_info_help[11] ; | 
| 210 | args_info->length_help = gengetopt_args_info_help[12] ; | 
| 211 | args_info->zlength_help = gengetopt_args_info_help[13] ; | 
| 212 | args_info->zoffset_help = gengetopt_args_info_help[14] ; | 
| 213 | args_info->sele1_help = gengetopt_args_info_help[15] ; | 
| 214 | args_info->sele2_help = gengetopt_args_info_help[16] ; | 
| 215 | args_info->sele3_help = gengetopt_args_info_help[17] ; | 
| 216 | args_info->refsele_help = gengetopt_args_info_help[18] ; | 
| 217 | args_info->comsele_help = gengetopt_args_info_help[19] ; | 
| 218 | args_info->molname_help = gengetopt_args_info_help[20] ; | 
| 219 | args_info->begin_help = gengetopt_args_info_help[21] ; | 
| 220 | args_info->end_help = gengetopt_args_info_help[22] ; | 
| 221 | args_info->radius_help = gengetopt_args_info_help[23] ; | 
| 222 | args_info->bo_help = gengetopt_args_info_help[25] ; | 
| 223 | args_info->bor_help = gengetopt_args_info_help[26] ; | 
| 224 | args_info->bad_help = gengetopt_args_info_help[27] ; | 
| 225 | args_info->gofr_help = gengetopt_args_info_help[28] ; | 
| 226 | args_info->gofz_help = gengetopt_args_info_help[29] ; | 
| 227 | args_info->r_theta_help = gengetopt_args_info_help[30] ; | 
| 228 | args_info->r_omega_help = gengetopt_args_info_help[31] ; | 
| 229 | args_info->r_z_help = gengetopt_args_info_help[32] ; | 
| 230 | args_info->theta_omega_help = gengetopt_args_info_help[33] ; | 
| 231 | args_info->gxyz_help = gengetopt_args_info_help[34] ; | 
| 232 | args_info->twodgofr_help = gengetopt_args_info_help[35] ; | 
| 233 | args_info->p2_help = gengetopt_args_info_help[36] ; | 
| 234 | args_info->rp2_help = gengetopt_args_info_help[37] ; | 
| 235 | args_info->scd_help = gengetopt_args_info_help[38] ; | 
| 236 | args_info->density_help = gengetopt_args_info_help[39] ; | 
| 237 | args_info->slab_density_help = gengetopt_args_info_help[40] ; | 
| 238 | args_info->p_angle_help = gengetopt_args_info_help[41] ; | 
| 239 | args_info->hxy_help = gengetopt_args_info_help[42] ; | 
| 240 | args_info->rho_r_help = gengetopt_args_info_help[43] ; | 
| 241 | args_info->hullvol_help = gengetopt_args_info_help[44] ; | 
| 242 |  | 
| 243 | } | 
| 244 |  | 
| 245 | void | 
| 246 | cmdline_parser_print_version (void) | 
| 247 | { | 
| 248 | printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION); | 
| 249 | } | 
| 250 |  | 
| 251 | static void print_help_common(void) { | 
| 252 | cmdline_parser_print_version (); | 
| 253 |  | 
| 254 | if (strlen(gengetopt_args_info_purpose) > 0) | 
| 255 | printf("\n%s\n", gengetopt_args_info_purpose); | 
| 256 |  | 
| 257 | if (strlen(gengetopt_args_info_usage) > 0) | 
| 258 | printf("\n%s\n", gengetopt_args_info_usage); | 
| 259 |  | 
| 260 | printf("\n"); | 
| 261 |  | 
| 262 | if (strlen(gengetopt_args_info_description) > 0) | 
| 263 | printf("%s\n", gengetopt_args_info_description); | 
| 264 | } | 
| 265 |  | 
| 266 | void | 
| 267 | cmdline_parser_print_help (void) | 
| 268 | { | 
| 269 | int i = 0; | 
| 270 | print_help_common(); | 
| 271 | while (gengetopt_args_info_help[i]) | 
| 272 | printf("%s\n", gengetopt_args_info_help[i++]); | 
| 273 | } | 
| 274 |  | 
| 275 | void | 
| 276 | cmdline_parser_init (struct gengetopt_args_info *args_info) | 
| 277 | { | 
| 278 | clear_given (args_info); | 
| 279 | clear_args (args_info); | 
| 280 | init_args_info (args_info); | 
| 281 |  | 
| 282 | args_info->inputs = NULL; | 
| 283 | args_info->inputs_num = 0; | 
| 284 | } | 
| 285 |  | 
| 286 | void | 
| 287 | cmdline_parser_params_init(struct cmdline_parser_params *params) | 
| 288 | { | 
| 289 | if (params) | 
| 290 | { | 
| 291 | params->override = 0; | 
| 292 | params->initialize = 1; | 
| 293 | params->check_required = 1; | 
| 294 | params->check_ambiguity = 0; | 
| 295 | params->print_errors = 1; | 
| 296 | } | 
| 297 | } | 
| 298 |  | 
| 299 | struct cmdline_parser_params * | 
| 300 | cmdline_parser_params_create(void) | 
| 301 | { | 
| 302 | struct cmdline_parser_params *params = | 
| 303 | (struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params)); | 
| 304 | cmdline_parser_params_init(params); | 
| 305 | return params; | 
| 306 | } | 
| 307 |  | 
| 308 | static void | 
| 309 | free_string_field (char **s) | 
| 310 | { | 
| 311 | if (*s) | 
| 312 | { | 
| 313 | free (*s); | 
| 314 | *s = 0; | 
| 315 | } | 
| 316 | } | 
| 317 |  | 
| 318 |  | 
| 319 | static void | 
| 320 | cmdline_parser_release (struct gengetopt_args_info *args_info) | 
| 321 | { | 
| 322 | unsigned int i; | 
| 323 | free_string_field (&(args_info->input_arg)); | 
| 324 | free_string_field (&(args_info->input_orig)); | 
| 325 | free_string_field (&(args_info->output_arg)); | 
| 326 | free_string_field (&(args_info->output_orig)); | 
| 327 | free_string_field (&(args_info->step_orig)); | 
| 328 | free_string_field (&(args_info->nbins_orig)); | 
| 329 | free_string_field (&(args_info->nbins_x_orig)); | 
| 330 | free_string_field (&(args_info->nbins_y_orig)); | 
| 331 | free_string_field (&(args_info->nbins_z_orig)); | 
| 332 | free_string_field (&(args_info->nanglebins_orig)); | 
| 333 | free_string_field (&(args_info->rcut_orig)); | 
| 334 | free_string_field (&(args_info->dz_orig)); | 
| 335 | free_string_field (&(args_info->length_orig)); | 
| 336 | free_string_field (&(args_info->zlength_orig)); | 
| 337 | free_string_field (&(args_info->zoffset_orig)); | 
| 338 | free_string_field (&(args_info->sele1_arg)); | 
| 339 | free_string_field (&(args_info->sele1_orig)); | 
| 340 | free_string_field (&(args_info->sele2_arg)); | 
| 341 | free_string_field (&(args_info->sele2_orig)); | 
| 342 | free_string_field (&(args_info->sele3_arg)); | 
| 343 | free_string_field (&(args_info->sele3_orig)); | 
| 344 | free_string_field (&(args_info->refsele_arg)); | 
| 345 | free_string_field (&(args_info->refsele_orig)); | 
| 346 | free_string_field (&(args_info->comsele_arg)); | 
| 347 | free_string_field (&(args_info->comsele_orig)); | 
| 348 | free_string_field (&(args_info->molname_arg)); | 
| 349 | free_string_field (&(args_info->molname_orig)); | 
| 350 | free_string_field (&(args_info->begin_orig)); | 
| 351 | free_string_field (&(args_info->end_orig)); | 
| 352 | free_string_field (&(args_info->radius_orig)); | 
| 353 |  | 
| 354 |  | 
| 355 | for (i = 0; i < args_info->inputs_num; ++i) | 
| 356 | free (args_info->inputs [i]); | 
| 357 |  | 
| 358 | if (args_info->inputs_num) | 
| 359 | free (args_info->inputs); | 
| 360 |  | 
| 361 | clear_given (args_info); | 
| 362 | } | 
| 363 |  | 
| 364 |  | 
| 365 | static void | 
| 366 | write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[]) | 
| 367 | { | 
| 368 | if (arg) { | 
| 369 | fprintf(outfile, "%s=\"%s\"\n", opt, arg); | 
| 370 | } else { | 
| 371 | fprintf(outfile, "%s\n", opt); | 
| 372 | } | 
| 373 | } | 
| 374 |  | 
| 375 |  | 
| 376 | int | 
| 377 | cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info) | 
| 378 | { | 
| 379 | int i = 0; | 
| 380 |  | 
| 381 | if (!outfile) | 
| 382 | { | 
| 383 | fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE); | 
| 384 | return EXIT_FAILURE; | 
| 385 | } | 
| 386 |  | 
| 387 | if (args_info->help_given) | 
| 388 | write_into_file(outfile, "help", 0, 0 ); | 
| 389 | if (args_info->version_given) | 
| 390 | write_into_file(outfile, "version", 0, 0 ); | 
| 391 | if (args_info->input_given) | 
| 392 | write_into_file(outfile, "input", args_info->input_orig, 0); | 
| 393 | if (args_info->output_given) | 
| 394 | write_into_file(outfile, "output", args_info->output_orig, 0); | 
| 395 | if (args_info->step_given) | 
| 396 | write_into_file(outfile, "step", args_info->step_orig, 0); | 
| 397 | if (args_info->nbins_given) | 
| 398 | write_into_file(outfile, "nbins", args_info->nbins_orig, 0); | 
| 399 | if (args_info->nbins_x_given) | 
| 400 | write_into_file(outfile, "nbins_x", args_info->nbins_x_orig, 0); | 
| 401 | if (args_info->nbins_y_given) | 
| 402 | write_into_file(outfile, "nbins_y", args_info->nbins_y_orig, 0); | 
| 403 | if (args_info->nbins_z_given) | 
| 404 | write_into_file(outfile, "nbins_z", args_info->nbins_z_orig, 0); | 
| 405 | if (args_info->nanglebins_given) | 
| 406 | write_into_file(outfile, "nanglebins", args_info->nanglebins_orig, 0); | 
| 407 | if (args_info->rcut_given) | 
| 408 | write_into_file(outfile, "rcut", args_info->rcut_orig, 0); | 
| 409 | if (args_info->dz_given) | 
| 410 | write_into_file(outfile, "dz", args_info->dz_orig, 0); | 
| 411 | if (args_info->length_given) | 
| 412 | write_into_file(outfile, "length", args_info->length_orig, 0); | 
| 413 | if (args_info->zlength_given) | 
| 414 | write_into_file(outfile, "zlength", args_info->zlength_orig, 0); | 
| 415 | if (args_info->zoffset_given) | 
| 416 | write_into_file(outfile, "zoffset", args_info->zoffset_orig, 0); | 
| 417 | if (args_info->sele1_given) | 
| 418 | write_into_file(outfile, "sele1", args_info->sele1_orig, 0); | 
| 419 | if (args_info->sele2_given) | 
| 420 | write_into_file(outfile, "sele2", args_info->sele2_orig, 0); | 
| 421 | if (args_info->sele3_given) | 
| 422 | write_into_file(outfile, "sele3", args_info->sele3_orig, 0); | 
| 423 | if (args_info->refsele_given) | 
| 424 | write_into_file(outfile, "refsele", args_info->refsele_orig, 0); | 
| 425 | if (args_info->comsele_given) | 
| 426 | write_into_file(outfile, "comsele", args_info->comsele_orig, 0); | 
| 427 | if (args_info->molname_given) | 
| 428 | write_into_file(outfile, "molname", args_info->molname_orig, 0); | 
| 429 | if (args_info->begin_given) | 
| 430 | write_into_file(outfile, "begin", args_info->begin_orig, 0); | 
| 431 | if (args_info->end_given) | 
| 432 | write_into_file(outfile, "end", args_info->end_orig, 0); | 
| 433 | if (args_info->radius_given) | 
| 434 | write_into_file(outfile, "radius", args_info->radius_orig, 0); | 
| 435 | if (args_info->bo_given) | 
| 436 | write_into_file(outfile, "bo", 0, 0 ); | 
| 437 | if (args_info->bor_given) | 
| 438 | write_into_file(outfile, "bor", 0, 0 ); | 
| 439 | if (args_info->bad_given) | 
| 440 | write_into_file(outfile, "bad", 0, 0 ); | 
| 441 | if (args_info->gofr_given) | 
| 442 | write_into_file(outfile, "gofr", 0, 0 ); | 
| 443 | if (args_info->gofz_given) | 
| 444 | write_into_file(outfile, "gofz", 0, 0 ); | 
| 445 | if (args_info->r_theta_given) | 
| 446 | write_into_file(outfile, "r_theta", 0, 0 ); | 
| 447 | if (args_info->r_omega_given) | 
| 448 | write_into_file(outfile, "r_omega", 0, 0 ); | 
| 449 | if (args_info->r_z_given) | 
| 450 | write_into_file(outfile, "r_z", 0, 0 ); | 
| 451 | if (args_info->theta_omega_given) | 
| 452 | write_into_file(outfile, "theta_omega", 0, 0 ); | 
| 453 | if (args_info->gxyz_given) | 
| 454 | write_into_file(outfile, "gxyz", 0, 0 ); | 
| 455 | if (args_info->twodgofr_given) | 
| 456 | write_into_file(outfile, "twodgofr", 0, 0 ); | 
| 457 | if (args_info->p2_given) | 
| 458 | write_into_file(outfile, "p2", 0, 0 ); | 
| 459 | if (args_info->rp2_given) | 
| 460 | write_into_file(outfile, "rp2", 0, 0 ); | 
| 461 | if (args_info->scd_given) | 
| 462 | write_into_file(outfile, "scd", 0, 0 ); | 
| 463 | if (args_info->density_given) | 
| 464 | write_into_file(outfile, "density", 0, 0 ); | 
| 465 | if (args_info->slab_density_given) | 
| 466 | write_into_file(outfile, "slab_density", 0, 0 ); | 
| 467 | if (args_info->p_angle_given) | 
| 468 | write_into_file(outfile, "p_angle", 0, 0 ); | 
| 469 | if (args_info->hxy_given) | 
| 470 | write_into_file(outfile, "hxy", 0, 0 ); | 
| 471 | if (args_info->rho_r_given) | 
| 472 | write_into_file(outfile, "rho_r", 0, 0 ); | 
| 473 | if (args_info->hullvol_given) | 
| 474 | write_into_file(outfile, "hullvol", 0, 0 ); | 
| 475 |  | 
| 476 |  | 
| 477 | i = EXIT_SUCCESS; | 
| 478 | return i; | 
| 479 | } | 
| 480 |  | 
| 481 | int | 
| 482 | cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info) | 
| 483 | { | 
| 484 | FILE *outfile; | 
| 485 | int i = 0; | 
| 486 |  | 
| 487 | outfile = fopen(filename, "w"); | 
| 488 |  | 
| 489 | if (!outfile) | 
| 490 | { | 
| 491 | fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename); | 
| 492 | return EXIT_FAILURE; | 
| 493 | } | 
| 494 |  | 
| 495 | i = cmdline_parser_dump(outfile, args_info); | 
| 496 | fclose (outfile); | 
| 497 |  | 
| 498 | return i; | 
| 499 | } | 
| 500 |  | 
| 501 | void | 
| 502 | cmdline_parser_free (struct gengetopt_args_info *args_info) | 
| 503 | { | 
| 504 | cmdline_parser_release (args_info); | 
| 505 | } | 
| 506 |  | 
| 507 | /** @brief replacement of strdup, which is not standard */ | 
| 508 | char * | 
| 509 | gengetopt_strdup (const char *s) | 
| 510 | { | 
| 511 | char *result = NULL; | 
| 512 | if (!s) | 
| 513 | return result; | 
| 514 |  | 
| 515 | result = (char*)malloc(strlen(s) + 1); | 
| 516 | if (result == (char*)0) | 
| 517 | return (char*)0; | 
| 518 | strcpy(result, s); | 
| 519 | return result; | 
| 520 | } | 
| 521 |  | 
| 522 | static void | 
| 523 | reset_group_staticProps(struct gengetopt_args_info *args_info) | 
| 524 | { | 
| 525 | if (! args_info->staticProps_group_counter) | 
| 526 | return; | 
| 527 |  | 
| 528 | args_info->bo_given = 0 ; | 
| 529 | args_info->bor_given = 0 ; | 
| 530 | args_info->bad_given = 0 ; | 
| 531 | args_info->gofr_given = 0 ; | 
| 532 | args_info->gofz_given = 0 ; | 
| 533 | args_info->r_theta_given = 0 ; | 
| 534 | args_info->r_omega_given = 0 ; | 
| 535 | args_info->r_z_given = 0 ; | 
| 536 | args_info->theta_omega_given = 0 ; | 
| 537 | args_info->gxyz_given = 0 ; | 
| 538 | args_info->twodgofr_given = 0 ; | 
| 539 | args_info->p2_given = 0 ; | 
| 540 | args_info->rp2_given = 0 ; | 
| 541 | args_info->scd_given = 0 ; | 
| 542 | args_info->density_given = 0 ; | 
| 543 | args_info->slab_density_given = 0 ; | 
| 544 | args_info->p_angle_given = 0 ; | 
| 545 | args_info->hxy_given = 0 ; | 
| 546 | args_info->rho_r_given = 0 ; | 
| 547 | args_info->hullvol_given = 0 ; | 
| 548 |  | 
| 549 | args_info->staticProps_group_counter = 0; | 
| 550 | } | 
| 551 |  | 
| 552 | int | 
| 553 | cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info) | 
| 554 | { | 
| 555 | return cmdline_parser2 (argc, argv, args_info, 0, 1, 1); | 
| 556 | } | 
| 557 |  | 
| 558 | int | 
| 559 | cmdline_parser_ext (int argc, char * const *argv, struct gengetopt_args_info *args_info, | 
| 560 | struct cmdline_parser_params *params) | 
| 561 | { | 
| 562 | int result; | 
| 563 | result = cmdline_parser_internal (argc, argv, args_info, params, NULL); | 
| 564 |  | 
| 565 | if (result == EXIT_FAILURE) | 
| 566 | { | 
| 567 | cmdline_parser_free (args_info); | 
| 568 | exit (EXIT_FAILURE); | 
| 569 | } | 
| 570 |  | 
| 571 | return result; | 
| 572 | } | 
| 573 |  | 
| 574 | int | 
| 575 | cmdline_parser2 (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required) | 
| 576 | { | 
| 577 | int result; | 
| 578 | struct cmdline_parser_params params; | 
| 579 |  | 
| 580 | params.override = override; | 
| 581 | params.initialize = initialize; | 
| 582 | params.check_required = check_required; | 
| 583 | params.check_ambiguity = 0; | 
| 584 | params.print_errors = 1; | 
| 585 |  | 
| 586 | result = cmdline_parser_internal (argc, argv, args_info, ¶ms, NULL); | 
| 587 |  | 
| 588 | if (result == EXIT_FAILURE) | 
| 589 | { | 
| 590 | cmdline_parser_free (args_info); | 
| 591 | exit (EXIT_FAILURE); | 
| 592 | } | 
| 593 |  | 
| 594 | return result; | 
| 595 | } | 
| 596 |  | 
| 597 | int | 
| 598 | cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name) | 
| 599 | { | 
| 600 | int result = EXIT_SUCCESS; | 
| 601 |  | 
| 602 | if (cmdline_parser_required2(args_info, prog_name, NULL) > 0) | 
| 603 | result = EXIT_FAILURE; | 
| 604 |  | 
| 605 | if (result == EXIT_FAILURE) | 
| 606 | { | 
| 607 | cmdline_parser_free (args_info); | 
| 608 | exit (EXIT_FAILURE); | 
| 609 | } | 
| 610 |  | 
| 611 | return result; | 
| 612 | } | 
| 613 |  | 
| 614 | int | 
| 615 | cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error) | 
| 616 | { | 
| 617 | int error = 0; | 
| 618 |  | 
| 619 | /* checks for required options */ | 
| 620 | if (! args_info->input_given) | 
| 621 | { | 
| 622 | fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : "")); | 
| 623 | error = 1; | 
| 624 | } | 
| 625 |  | 
| 626 | if (args_info->staticProps_group_counter == 0) | 
| 627 | { | 
| 628 | fprintf (stderr, "%s: %d options of group staticProps were given. One is required.%s\n", prog_name, args_info->staticProps_group_counter, (additional_error ? additional_error : "")); | 
| 629 | error = 1; | 
| 630 | } | 
| 631 |  | 
| 632 |  | 
| 633 | /* checks for dependences among options */ | 
| 634 |  | 
| 635 | return error; | 
| 636 | } | 
| 637 |  | 
| 638 |  | 
| 639 | static char *package_name = 0; | 
| 640 |  | 
| 641 | /** | 
| 642 | * @brief updates an option | 
| 643 | * @param field the generic pointer to the field to update | 
| 644 | * @param orig_field the pointer to the orig field | 
| 645 | * @param field_given the pointer to the number of occurrence of this option | 
| 646 | * @param prev_given the pointer to the number of occurrence already seen | 
| 647 | * @param value the argument for this option (if null no arg was specified) | 
| 648 | * @param possible_values the possible values for this option (if specified) | 
| 649 | * @param default_value the default value (in case the option only accepts fixed values) | 
| 650 | * @param arg_type the type of this option | 
| 651 | * @param check_ambiguity @see cmdline_parser_params.check_ambiguity | 
| 652 | * @param override @see cmdline_parser_params.override | 
| 653 | * @param no_free whether to free a possible previous value | 
| 654 | * @param multiple_option whether this is a multiple option | 
| 655 | * @param long_opt the corresponding long option | 
| 656 | * @param short_opt the corresponding short option (or '-' if none) | 
| 657 | * @param additional_error possible further error specification | 
| 658 | */ | 
| 659 | static | 
| 660 | int update_arg(void *field, char **orig_field, | 
| 661 | unsigned int *field_given, unsigned int *prev_given, | 
| 662 | char *value, char *possible_values[], const char *default_value, | 
| 663 | cmdline_parser_arg_type arg_type, | 
| 664 | int check_ambiguity, int override, | 
| 665 | int no_free, int multiple_option, | 
| 666 | const char *long_opt, char short_opt, | 
| 667 | const char *additional_error) | 
| 668 | { | 
| 669 | char *stop_char = 0; | 
| 670 | const char *val = value; | 
| 671 | int found; | 
| 672 | char **string_field; | 
| 673 |  | 
| 674 | stop_char = 0; | 
| 675 | found = 0; | 
| 676 |  | 
| 677 | if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given))) | 
| 678 | { | 
| 679 | if (short_opt != '-') | 
| 680 | fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n", | 
| 681 | package_name, long_opt, short_opt, | 
| 682 | (additional_error ? additional_error : "")); | 
| 683 | else | 
| 684 | fprintf (stderr, "%s: `--%s' option given more than once%s\n", | 
| 685 | package_name, long_opt, | 
| 686 | (additional_error ? additional_error : "")); | 
| 687 | return 1; /* failure */ | 
| 688 | } | 
| 689 |  | 
| 690 |  | 
| 691 | if (field_given && *field_given && ! override) | 
| 692 | return 0; | 
| 693 | if (prev_given) | 
| 694 | (*prev_given)++; | 
| 695 | if (field_given) | 
| 696 | (*field_given)++; | 
| 697 | if (possible_values) | 
| 698 | val = possible_values[found]; | 
| 699 |  | 
| 700 | switch(arg_type) { | 
| 701 | case ARG_INT: | 
| 702 | if (val) *((int *)field) = strtol (val, &stop_char, 0); | 
| 703 | break; | 
| 704 | case ARG_DOUBLE: | 
| 705 | if (val) *((double *)field) = strtod (val, &stop_char); | 
| 706 | break; | 
| 707 | case ARG_STRING: | 
| 708 | if (val) { | 
| 709 | string_field = (char **)field; | 
| 710 | if (!no_free && *string_field) | 
| 711 | free (*string_field); /* free previous string */ | 
| 712 | *string_field = gengetopt_strdup (val); | 
| 713 | } | 
| 714 | break; | 
| 715 | default: | 
| 716 | break; | 
| 717 | }; | 
| 718 |  | 
| 719 | /* check numeric conversion */ | 
| 720 | switch(arg_type) { | 
| 721 | case ARG_INT: | 
| 722 | case ARG_DOUBLE: | 
| 723 | if (val && !(stop_char && *stop_char == '\0')) { | 
| 724 | fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val); | 
| 725 | return 1; /* failure */ | 
| 726 | } | 
| 727 | break; | 
| 728 | default: | 
| 729 | ; | 
| 730 | }; | 
| 731 |  | 
| 732 | /* store the original value */ | 
| 733 | switch(arg_type) { | 
| 734 | case ARG_NO: | 
| 735 | break; | 
| 736 | default: | 
| 737 | if (value && orig_field) { | 
| 738 | if (no_free) { | 
| 739 | *orig_field = value; | 
| 740 | } else { | 
| 741 | if (*orig_field) | 
| 742 | free (*orig_field); /* free previous string */ | 
| 743 | *orig_field = gengetopt_strdup (value); | 
| 744 | } | 
| 745 | } | 
| 746 | }; | 
| 747 |  | 
| 748 | return 0; /* OK */ | 
| 749 | } | 
| 750 |  | 
| 751 |  | 
| 752 | int | 
| 753 | cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, | 
| 754 | struct cmdline_parser_params *params, const char *additional_error) | 
| 755 | { | 
| 756 | int c;        /* Character of the parsed option.  */ | 
| 757 |  | 
| 758 | int error = 0; | 
| 759 | struct gengetopt_args_info local_args_info; | 
| 760 |  | 
| 761 | int override; | 
| 762 | int initialize; | 
| 763 | int check_required; | 
| 764 | int check_ambiguity; | 
| 765 |  | 
| 766 | package_name = argv[0]; | 
| 767 |  | 
| 768 | override = params->override; | 
| 769 | initialize = params->initialize; | 
| 770 | check_required = params->check_required; | 
| 771 | check_ambiguity = params->check_ambiguity; | 
| 772 |  | 
| 773 | if (initialize) | 
| 774 | cmdline_parser_init (args_info); | 
| 775 |  | 
| 776 | cmdline_parser_init (&local_args_info); | 
| 777 |  | 
| 778 | optarg = 0; | 
| 779 | optind = 0; | 
| 780 | opterr = params->print_errors; | 
| 781 | optopt = '?'; | 
| 782 |  | 
| 783 | while (1) | 
| 784 | { | 
| 785 | int option_index = 0; | 
| 786 |  | 
| 787 | static struct option long_options[] = { | 
| 788 | { "help",       0, NULL, 'h' }, | 
| 789 | { "version",    0, NULL, 'V' }, | 
| 790 | { "input",      1, NULL, 'i' }, | 
| 791 | { "output",     1, NULL, 'o' }, | 
| 792 | { "step",       1, NULL, 'n' }, | 
| 793 | { "nbins",      1, NULL, 'b' }, | 
| 794 | { "nbins_x",    1, NULL, 'x' }, | 
| 795 | { "nbins_y",    1, NULL, 'y' }, | 
| 796 | { "nbins_z",    1, NULL, 0 }, | 
| 797 | { "nanglebins", 1, NULL, 'a' }, | 
| 798 | { "rcut",       1, NULL, 'c' }, | 
| 799 | { "dz", 1, NULL, 0 }, | 
| 800 | { "length",     1, NULL, 0 }, | 
| 801 | { "zlength",    1, NULL, 0 }, | 
| 802 | { "zoffset",    1, NULL, 'z' }, | 
| 803 | { "sele1",      1, NULL, 0 }, | 
| 804 | { "sele2",      1, NULL, 0 }, | 
| 805 | { "sele3",      1, NULL, 0 }, | 
| 806 | { "refsele",    1, NULL, 0 }, | 
| 807 | { "comsele",    1, NULL, 0 }, | 
| 808 | { "molname",    1, NULL, 0 }, | 
| 809 | { "begin",      1, NULL, 0 }, | 
| 810 | { "end",        1, NULL, 0 }, | 
| 811 | { "radius",     1, NULL, 0 }, | 
| 812 | { "bo", 0, NULL, 0 }, | 
| 813 | { "bor",        0, NULL, 0 }, | 
| 814 | { "bad",        0, NULL, 0 }, | 
| 815 | { "gofr",       0, NULL, 'g' }, | 
| 816 | { "gofz",       0, NULL, 0 }, | 
| 817 | { "r_theta",    0, NULL, 0 }, | 
| 818 | { "r_omega",    0, NULL, 0 }, | 
| 819 | { "r_z",        0, NULL, 0 }, | 
| 820 | { "theta_omega",        0, NULL, 0 }, | 
| 821 | { "gxyz",       0, NULL, 0 }, | 
| 822 | { "twodgofr",   0, NULL, 0 }, | 
| 823 | { "p2", 0, NULL, 'p' }, | 
| 824 | { "rp2",        0, NULL, 0 }, | 
| 825 | { "scd",        0, NULL, 's' }, | 
| 826 | { "density",    0, NULL, 'd' }, | 
| 827 | { "slab_density",       0, NULL, 0 }, | 
| 828 | { "p_angle",    0, NULL, 0 }, | 
| 829 | { "hxy",        0, NULL, 0 }, | 
| 830 | { "rho_r",      0, NULL, 0 }, | 
| 831 | { "hullvol",    0, NULL, 0 }, | 
| 832 | { NULL, 0, NULL, 0 } | 
| 833 | }; | 
| 834 |  | 
| 835 | c = getopt_long (argc, argv, "hVi:o:n:b:x:y:a:c:z:gpsd", long_options, &option_index); | 
| 836 |  | 
| 837 | if (c == -1) break;       /* Exit from `while (1)' loop.  */ | 
| 838 |  | 
| 839 | switch (c) | 
| 840 | { | 
| 841 | case 'h':       /* Print help and exit.  */ | 
| 842 | cmdline_parser_print_help (); | 
| 843 | cmdline_parser_free (&local_args_info); | 
| 844 | exit (EXIT_SUCCESS); | 
| 845 |  | 
| 846 | case 'V':       /* Print version and exit.  */ | 
| 847 | cmdline_parser_print_version (); | 
| 848 | cmdline_parser_free (&local_args_info); | 
| 849 | exit (EXIT_SUCCESS); | 
| 850 |  | 
| 851 | case 'i':       /* input dump file.  */ | 
| 852 |  | 
| 853 |  | 
| 854 | if (update_arg( (void *)&(args_info->input_arg), | 
| 855 | &(args_info->input_orig), &(args_info->input_given), | 
| 856 | &(local_args_info.input_given), optarg, 0, 0, ARG_STRING, | 
| 857 | check_ambiguity, override, 0, 0, | 
| 858 | "input", 'i', | 
| 859 | additional_error)) | 
| 860 | goto failure; | 
| 861 |  | 
| 862 | break; | 
| 863 | case 'o':       /* output file name.  */ | 
| 864 |  | 
| 865 |  | 
| 866 | if (update_arg( (void *)&(args_info->output_arg), | 
| 867 | &(args_info->output_orig), &(args_info->output_given), | 
| 868 | &(local_args_info.output_given), optarg, 0, 0, ARG_STRING, | 
| 869 | check_ambiguity, override, 0, 0, | 
| 870 | "output", 'o', | 
| 871 | additional_error)) | 
| 872 | goto failure; | 
| 873 |  | 
| 874 | break; | 
| 875 | case 'n':       /* process every n frame.  */ | 
| 876 |  | 
| 877 |  | 
| 878 | if (update_arg( (void *)&(args_info->step_arg), | 
| 879 | &(args_info->step_orig), &(args_info->step_given), | 
| 880 | &(local_args_info.step_given), optarg, 0, "1", ARG_INT, | 
| 881 | check_ambiguity, override, 0, 0, | 
| 882 | "step", 'n', | 
| 883 | additional_error)) | 
| 884 | goto failure; | 
| 885 |  | 
| 886 | break; | 
| 887 | case 'b':       /* number of bins (general purpose).  */ | 
| 888 |  | 
| 889 |  | 
| 890 | if (update_arg( (void *)&(args_info->nbins_arg), | 
| 891 | &(args_info->nbins_orig), &(args_info->nbins_given), | 
| 892 | &(local_args_info.nbins_given), optarg, 0, "100", ARG_INT, | 
| 893 | check_ambiguity, override, 0, 0, | 
| 894 | "nbins", 'b', | 
| 895 | additional_error)) | 
| 896 | goto failure; | 
| 897 |  | 
| 898 | break; | 
| 899 | case 'x':       /* number of bins in x axis.  */ | 
| 900 |  | 
| 901 |  | 
| 902 | if (update_arg( (void *)&(args_info->nbins_x_arg), | 
| 903 | &(args_info->nbins_x_orig), &(args_info->nbins_x_given), | 
| 904 | &(local_args_info.nbins_x_given), optarg, 0, "100", ARG_INT, | 
| 905 | check_ambiguity, override, 0, 0, | 
| 906 | "nbins_x", 'x', | 
| 907 | additional_error)) | 
| 908 | goto failure; | 
| 909 |  | 
| 910 | break; | 
| 911 | case 'y':       /* number of bins in y axis.  */ | 
| 912 |  | 
| 913 |  | 
| 914 | if (update_arg( (void *)&(args_info->nbins_y_arg), | 
| 915 | &(args_info->nbins_y_orig), &(args_info->nbins_y_given), | 
| 916 | &(local_args_info.nbins_y_given), optarg, 0, "100", ARG_INT, | 
| 917 | check_ambiguity, override, 0, 0, | 
| 918 | "nbins_y", 'y', | 
| 919 | additional_error)) | 
| 920 | goto failure; | 
| 921 |  | 
| 922 | break; | 
| 923 | case 'a':       /* number of bins for cos(angle).  */ | 
| 924 |  | 
| 925 |  | 
| 926 | if (update_arg( (void *)&(args_info->nanglebins_arg), | 
| 927 | &(args_info->nanglebins_orig), &(args_info->nanglebins_given), | 
| 928 | &(local_args_info.nanglebins_given), optarg, 0, "50", ARG_INT, | 
| 929 | check_ambiguity, override, 0, 0, | 
| 930 | "nanglebins", 'a', | 
| 931 | additional_error)) | 
| 932 | goto failure; | 
| 933 |  | 
| 934 | break; | 
| 935 | case 'c':       /* cutoff radius (rcut).  */ | 
| 936 |  | 
| 937 |  | 
| 938 | if (update_arg( (void *)&(args_info->rcut_arg), | 
| 939 | &(args_info->rcut_orig), &(args_info->rcut_given), | 
| 940 | &(local_args_info.rcut_given), optarg, 0, 0, ARG_DOUBLE, | 
| 941 | check_ambiguity, override, 0, 0, | 
| 942 | "rcut", 'c', | 
| 943 | additional_error)) | 
| 944 | goto failure; | 
| 945 |  | 
| 946 | break; | 
| 947 | case 'z':       /* Where to set the zero for the slab_density calculation.  */ | 
| 948 |  | 
| 949 |  | 
| 950 | if (update_arg( (void *)&(args_info->zoffset_arg), | 
| 951 | &(args_info->zoffset_orig), &(args_info->zoffset_given), | 
| 952 | &(local_args_info.zoffset_given), optarg, 0, "0", ARG_DOUBLE, | 
| 953 | check_ambiguity, override, 0, 0, | 
| 954 | "zoffset", 'z', | 
| 955 | additional_error)) | 
| 956 | goto failure; | 
| 957 |  | 
| 958 | break; | 
| 959 | case 'g':       /* g(r).  */ | 
| 960 |  | 
| 961 | if (args_info->staticProps_group_counter && override) | 
| 962 | reset_group_staticProps (args_info); | 
| 963 | args_info->staticProps_group_counter += 1; | 
| 964 |  | 
| 965 | if (update_arg( 0 , | 
| 966 | 0 , &(args_info->gofr_given), | 
| 967 | &(local_args_info.gofr_given), optarg, 0, 0, ARG_NO, | 
| 968 | check_ambiguity, override, 0, 0, | 
| 969 | "gofr", 'g', | 
| 970 | additional_error)) | 
| 971 | goto failure; | 
| 972 |  | 
| 973 | break; | 
| 974 | case 'p':       /* p2 order parameter (--sele1 and --sele2 must be specified).  */ | 
| 975 |  | 
| 976 | if (args_info->staticProps_group_counter && override) | 
| 977 | reset_group_staticProps (args_info); | 
| 978 | args_info->staticProps_group_counter += 1; | 
| 979 |  | 
| 980 | if (update_arg( 0 , | 
| 981 | 0 , &(args_info->p2_given), | 
| 982 | &(local_args_info.p2_given), optarg, 0, 0, ARG_NO, | 
| 983 | check_ambiguity, override, 0, 0, | 
| 984 | "p2", 'p', | 
| 985 | additional_error)) | 
| 986 | goto failure; | 
| 987 |  | 
| 988 | break; | 
| 989 | case 's':       /* scd order parameter (either --sele1, --sele2, --sele3 are specified or --molname, --begin, --end are specified).  */ | 
| 990 |  | 
| 991 | if (args_info->staticProps_group_counter && override) | 
| 992 | reset_group_staticProps (args_info); | 
| 993 | args_info->staticProps_group_counter += 1; | 
| 994 |  | 
| 995 | if (update_arg( 0 , | 
| 996 | 0 , &(args_info->scd_given), | 
| 997 | &(local_args_info.scd_given), optarg, 0, 0, ARG_NO, | 
| 998 | check_ambiguity, override, 0, 0, | 
| 999 | "scd", 's', | 
| 1000 | additional_error)) | 
| 1001 | goto failure; | 
| 1002 |  | 
| 1003 | break; | 
| 1004 | case 'd':       /* density plot.  */ | 
| 1005 |  | 
| 1006 | if (args_info->staticProps_group_counter && override) | 
| 1007 | reset_group_staticProps (args_info); | 
| 1008 | args_info->staticProps_group_counter += 1; | 
| 1009 |  | 
| 1010 | if (update_arg( 0 , | 
| 1011 | 0 , &(args_info->density_given), | 
| 1012 | &(local_args_info.density_given), optarg, 0, 0, ARG_NO, | 
| 1013 | check_ambiguity, override, 0, 0, | 
| 1014 | "density", 'd', | 
| 1015 | additional_error)) | 
| 1016 | goto failure; | 
| 1017 |  | 
| 1018 | break; | 
| 1019 |  | 
| 1020 | case 0: /* Long option with no short option */ | 
| 1021 | /* number of bins in z axis.  */ | 
| 1022 | if (strcmp (long_options[option_index].name, "nbins_z") == 0) | 
| 1023 | { | 
| 1024 |  | 
| 1025 |  | 
| 1026 | if (update_arg( (void *)&(args_info->nbins_z_arg), | 
| 1027 | &(args_info->nbins_z_orig), &(args_info->nbins_z_given), | 
| 1028 | &(local_args_info.nbins_z_given), optarg, 0, "100", ARG_INT, | 
| 1029 | check_ambiguity, override, 0, 0, | 
| 1030 | "nbins_z", '-', | 
| 1031 | additional_error)) | 
| 1032 | goto failure; | 
| 1033 |  | 
| 1034 | } | 
| 1035 | /* slab width (dz).  */ | 
| 1036 | else if (strcmp (long_options[option_index].name, "dz") == 0) | 
| 1037 | { | 
| 1038 |  | 
| 1039 |  | 
| 1040 | if (update_arg( (void *)&(args_info->dz_arg), | 
| 1041 | &(args_info->dz_orig), &(args_info->dz_given), | 
| 1042 | &(local_args_info.dz_given), optarg, 0, 0, ARG_DOUBLE, | 
| 1043 | check_ambiguity, override, 0, 0, | 
| 1044 | "dz", '-', | 
| 1045 | additional_error)) | 
| 1046 | goto failure; | 
| 1047 |  | 
| 1048 | } | 
| 1049 | /* maximum length (Defaults to 1/2 smallest length of first frame).  */ | 
| 1050 | else if (strcmp (long_options[option_index].name, "length") == 0) | 
| 1051 | { | 
| 1052 |  | 
| 1053 |  | 
| 1054 | if (update_arg( (void *)&(args_info->length_arg), | 
| 1055 | &(args_info->length_orig), &(args_info->length_given), | 
| 1056 | &(local_args_info.length_given), optarg, 0, 0, ARG_DOUBLE, | 
| 1057 | check_ambiguity, override, 0, 0, | 
| 1058 | "length", '-', | 
| 1059 | additional_error)) | 
| 1060 | goto failure; | 
| 1061 |  | 
| 1062 | } | 
| 1063 | /* maximum length (Defaults to 1/2 smallest length of first frame).  */ | 
| 1064 | else if (strcmp (long_options[option_index].name, "zlength") == 0) | 
| 1065 | { | 
| 1066 |  | 
| 1067 |  | 
| 1068 | if (update_arg( (void *)&(args_info->zlength_arg), | 
| 1069 | &(args_info->zlength_orig), &(args_info->zlength_given), | 
| 1070 | &(local_args_info.zlength_given), optarg, 0, 0, ARG_DOUBLE, | 
| 1071 | check_ambiguity, override, 0, 0, | 
| 1072 | "zlength", '-', | 
| 1073 | additional_error)) | 
| 1074 | goto failure; | 
| 1075 |  | 
| 1076 | } | 
| 1077 | /* select the first stuntdouble set.  */ | 
| 1078 | else if (strcmp (long_options[option_index].name, "sele1") == 0) | 
| 1079 | { | 
| 1080 |  | 
| 1081 |  | 
| 1082 | if (update_arg( (void *)&(args_info->sele1_arg), | 
| 1083 | &(args_info->sele1_orig), &(args_info->sele1_given), | 
| 1084 | &(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING, | 
| 1085 | check_ambiguity, override, 0, 0, | 
| 1086 | "sele1", '-', | 
| 1087 | additional_error)) | 
| 1088 | goto failure; | 
| 1089 |  | 
| 1090 | } | 
| 1091 | /* select the second stuntdouble set.  */ | 
| 1092 | else if (strcmp (long_options[option_index].name, "sele2") == 0) | 
| 1093 | { | 
| 1094 |  | 
| 1095 |  | 
| 1096 | if (update_arg( (void *)&(args_info->sele2_arg), | 
| 1097 | &(args_info->sele2_orig), &(args_info->sele2_given), | 
| 1098 | &(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING, | 
| 1099 | check_ambiguity, override, 0, 0, | 
| 1100 | "sele2", '-', | 
| 1101 | additional_error)) | 
| 1102 | goto failure; | 
| 1103 |  | 
| 1104 | } | 
| 1105 | /* select the third stuntdouble set.  */ | 
| 1106 | else if (strcmp (long_options[option_index].name, "sele3") == 0) | 
| 1107 | { | 
| 1108 |  | 
| 1109 |  | 
| 1110 | if (update_arg( (void *)&(args_info->sele3_arg), | 
| 1111 | &(args_info->sele3_orig), &(args_info->sele3_given), | 
| 1112 | &(local_args_info.sele3_given), optarg, 0, 0, ARG_STRING, | 
| 1113 | check_ambiguity, override, 0, 0, | 
| 1114 | "sele3", '-', | 
| 1115 | additional_error)) | 
| 1116 | goto failure; | 
| 1117 |  | 
| 1118 | } | 
| 1119 | /* select reference (use and only use with --gxyz).  */ | 
| 1120 | else if (strcmp (long_options[option_index].name, "refsele") == 0) | 
| 1121 | { | 
| 1122 |  | 
| 1123 |  | 
| 1124 | if (update_arg( (void *)&(args_info->refsele_arg), | 
| 1125 | &(args_info->refsele_orig), &(args_info->refsele_given), | 
| 1126 | &(local_args_info.refsele_given), optarg, 0, 0, ARG_STRING, | 
| 1127 | check_ambiguity, override, 0, 0, | 
| 1128 | "refsele", '-', | 
| 1129 | additional_error)) | 
| 1130 | goto failure; | 
| 1131 |  | 
| 1132 | } | 
| 1133 | /* select stunt doubles for center-of-mass reference point.  */ | 
| 1134 | else if (strcmp (long_options[option_index].name, "comsele") == 0) | 
| 1135 | { | 
| 1136 |  | 
| 1137 |  | 
| 1138 | if (update_arg( (void *)&(args_info->comsele_arg), | 
| 1139 | &(args_info->comsele_orig), &(args_info->comsele_given), | 
| 1140 | &(local_args_info.comsele_given), optarg, 0, 0, ARG_STRING, | 
| 1141 | check_ambiguity, override, 0, 0, | 
| 1142 | "comsele", '-', | 
| 1143 | additional_error)) | 
| 1144 | goto failure; | 
| 1145 |  | 
| 1146 | } | 
| 1147 | /* molecule name.  */ | 
| 1148 | else if (strcmp (long_options[option_index].name, "molname") == 0) | 
| 1149 | { | 
| 1150 |  | 
| 1151 |  | 
| 1152 | if (update_arg( (void *)&(args_info->molname_arg), | 
| 1153 | &(args_info->molname_orig), &(args_info->molname_given), | 
| 1154 | &(local_args_info.molname_given), optarg, 0, 0, ARG_STRING, | 
| 1155 | check_ambiguity, override, 0, 0, | 
| 1156 | "molname", '-', | 
| 1157 | additional_error)) | 
| 1158 | goto failure; | 
| 1159 |  | 
| 1160 | } | 
| 1161 | /* begin internal index.  */ | 
| 1162 | else if (strcmp (long_options[option_index].name, "begin") == 0) | 
| 1163 | { | 
| 1164 |  | 
| 1165 |  | 
| 1166 | if (update_arg( (void *)&(args_info->begin_arg), | 
| 1167 | &(args_info->begin_orig), &(args_info->begin_given), | 
| 1168 | &(local_args_info.begin_given), optarg, 0, 0, ARG_INT, | 
| 1169 | check_ambiguity, override, 0, 0, | 
| 1170 | "begin", '-', | 
| 1171 | additional_error)) | 
| 1172 | goto failure; | 
| 1173 |  | 
| 1174 | } | 
| 1175 | /* end internal index.  */ | 
| 1176 | else if (strcmp (long_options[option_index].name, "end") == 0) | 
| 1177 | { | 
| 1178 |  | 
| 1179 |  | 
| 1180 | if (update_arg( (void *)&(args_info->end_arg), | 
| 1181 | &(args_info->end_orig), &(args_info->end_given), | 
| 1182 | &(local_args_info.end_given), optarg, 0, 0, ARG_INT, | 
| 1183 | check_ambiguity, override, 0, 0, | 
| 1184 | "end", '-', | 
| 1185 | additional_error)) | 
| 1186 | goto failure; | 
| 1187 |  | 
| 1188 | } | 
| 1189 | /* nanoparticle radius.  */ | 
| 1190 | else if (strcmp (long_options[option_index].name, "radius") == 0) | 
| 1191 | { | 
| 1192 |  | 
| 1193 |  | 
| 1194 | if (update_arg( (void *)&(args_info->radius_arg), | 
| 1195 | &(args_info->radius_orig), &(args_info->radius_given), | 
| 1196 | &(local_args_info.radius_given), optarg, 0, 0, ARG_DOUBLE, | 
| 1197 | check_ambiguity, override, 0, 0, | 
| 1198 | "radius", '-', | 
| 1199 | additional_error)) | 
| 1200 | goto failure; | 
| 1201 |  | 
| 1202 | } | 
| 1203 | /* bond order parameter (--rcut must be specified).  */ | 
| 1204 | else if (strcmp (long_options[option_index].name, "bo") == 0) | 
| 1205 | { | 
| 1206 |  | 
| 1207 | if (args_info->staticProps_group_counter && override) | 
| 1208 | reset_group_staticProps (args_info); | 
| 1209 | args_info->staticProps_group_counter += 1; | 
| 1210 |  | 
| 1211 | if (update_arg( 0 , | 
| 1212 | 0 , &(args_info->bo_given), | 
| 1213 | &(local_args_info.bo_given), optarg, 0, 0, ARG_NO, | 
| 1214 | check_ambiguity, override, 0, 0, | 
| 1215 | "bo", '-', | 
| 1216 | additional_error)) | 
| 1217 | goto failure; | 
| 1218 |  | 
| 1219 | } | 
| 1220 | /* bond order parameter as a function of radius (--rcut must be specified).  */ | 
| 1221 | else if (strcmp (long_options[option_index].name, "bor") == 0) | 
| 1222 | { | 
| 1223 |  | 
| 1224 | if (args_info->staticProps_group_counter && override) | 
| 1225 | reset_group_staticProps (args_info); | 
| 1226 | args_info->staticProps_group_counter += 1; | 
| 1227 |  | 
| 1228 | if (update_arg( 0 , | 
| 1229 | 0 , &(args_info->bor_given), | 
| 1230 | &(local_args_info.bor_given), optarg, 0, 0, ARG_NO, | 
| 1231 | check_ambiguity, override, 0, 0, | 
| 1232 | "bor", '-', | 
| 1233 | additional_error)) | 
| 1234 | goto failure; | 
| 1235 |  | 
| 1236 | } | 
| 1237 | /* N(theta) bond angle density within (--rcut must be specified).  */ | 
| 1238 | else if (strcmp (long_options[option_index].name, "bad") == 0) | 
| 1239 | { | 
| 1240 |  | 
| 1241 | if (args_info->staticProps_group_counter && override) | 
| 1242 | reset_group_staticProps (args_info); | 
| 1243 | args_info->staticProps_group_counter += 1; | 
| 1244 |  | 
| 1245 | if (update_arg( 0 , | 
| 1246 | 0 , &(args_info->bad_given), | 
| 1247 | &(local_args_info.bad_given), optarg, 0, 0, ARG_NO, | 
| 1248 | check_ambiguity, override, 0, 0, | 
| 1249 | "bad", '-', | 
| 1250 | additional_error)) | 
| 1251 | goto failure; | 
| 1252 |  | 
| 1253 | } | 
| 1254 | /* g(z).  */ | 
| 1255 | else if (strcmp (long_options[option_index].name, "gofz") == 0) | 
| 1256 | { | 
| 1257 |  | 
| 1258 | if (args_info->staticProps_group_counter && override) | 
| 1259 | reset_group_staticProps (args_info); | 
| 1260 | args_info->staticProps_group_counter += 1; | 
| 1261 |  | 
| 1262 | if (update_arg( 0 , | 
| 1263 | 0 , &(args_info->gofz_given), | 
| 1264 | &(local_args_info.gofz_given), optarg, 0, 0, ARG_NO, | 
| 1265 | check_ambiguity, override, 0, 0, | 
| 1266 | "gofz", '-', | 
| 1267 | additional_error)) | 
| 1268 | goto failure; | 
| 1269 |  | 
| 1270 | } | 
| 1271 | /* g(r, cos(theta)).  */ | 
| 1272 | else if (strcmp (long_options[option_index].name, "r_theta") == 0) | 
| 1273 | { | 
| 1274 |  | 
| 1275 | if (args_info->staticProps_group_counter && override) | 
| 1276 | reset_group_staticProps (args_info); | 
| 1277 | args_info->staticProps_group_counter += 1; | 
| 1278 |  | 
| 1279 | if (update_arg( 0 , | 
| 1280 | 0 , &(args_info->r_theta_given), | 
| 1281 | &(local_args_info.r_theta_given), optarg, 0, 0, ARG_NO, | 
| 1282 | check_ambiguity, override, 0, 0, | 
| 1283 | "r_theta", '-', | 
| 1284 | additional_error)) | 
| 1285 | goto failure; | 
| 1286 |  | 
| 1287 | } | 
| 1288 | /* g(r, cos(omega)).  */ | 
| 1289 | else if (strcmp (long_options[option_index].name, "r_omega") == 0) | 
| 1290 | { | 
| 1291 |  | 
| 1292 | if (args_info->staticProps_group_counter && override) | 
| 1293 | reset_group_staticProps (args_info); | 
| 1294 | args_info->staticProps_group_counter += 1; | 
| 1295 |  | 
| 1296 | if (update_arg( 0 , | 
| 1297 | 0 , &(args_info->r_omega_given), | 
| 1298 | &(local_args_info.r_omega_given), optarg, 0, 0, ARG_NO, | 
| 1299 | check_ambiguity, override, 0, 0, | 
| 1300 | "r_omega", '-', | 
| 1301 | additional_error)) | 
| 1302 | goto failure; | 
| 1303 |  | 
| 1304 | } | 
| 1305 | /* g(r, z).  */ | 
| 1306 | else if (strcmp (long_options[option_index].name, "r_z") == 0) | 
| 1307 | { | 
| 1308 |  | 
| 1309 | if (args_info->staticProps_group_counter && override) | 
| 1310 | reset_group_staticProps (args_info); | 
| 1311 | args_info->staticProps_group_counter += 1; | 
| 1312 |  | 
| 1313 | if (update_arg( 0 , | 
| 1314 | 0 , &(args_info->r_z_given), | 
| 1315 | &(local_args_info.r_z_given), optarg, 0, 0, ARG_NO, | 
| 1316 | check_ambiguity, override, 0, 0, | 
| 1317 | "r_z", '-', | 
| 1318 | additional_error)) | 
| 1319 | goto failure; | 
| 1320 |  | 
| 1321 | } | 
| 1322 | /* g(cos(theta), cos(omega)).  */ | 
| 1323 | else if (strcmp (long_options[option_index].name, "theta_omega") == 0) | 
| 1324 | { | 
| 1325 |  | 
| 1326 | if (args_info->staticProps_group_counter && override) | 
| 1327 | reset_group_staticProps (args_info); | 
| 1328 | args_info->staticProps_group_counter += 1; | 
| 1329 |  | 
| 1330 | if (update_arg( 0 , | 
| 1331 | 0 , &(args_info->theta_omega_given), | 
| 1332 | &(local_args_info.theta_omega_given), optarg, 0, 0, ARG_NO, | 
| 1333 | check_ambiguity, override, 0, 0, | 
| 1334 | "theta_omega", '-', | 
| 1335 | additional_error)) | 
| 1336 | goto failure; | 
| 1337 |  | 
| 1338 | } | 
| 1339 | /* g(x, y, z).  */ | 
| 1340 | else if (strcmp (long_options[option_index].name, "gxyz") == 0) | 
| 1341 | { | 
| 1342 |  | 
| 1343 | if (args_info->staticProps_group_counter && override) | 
| 1344 | reset_group_staticProps (args_info); | 
| 1345 | args_info->staticProps_group_counter += 1; | 
| 1346 |  | 
| 1347 | if (update_arg( 0 , | 
| 1348 | 0 , &(args_info->gxyz_given), | 
| 1349 | &(local_args_info.gxyz_given), optarg, 0, 0, ARG_NO, | 
| 1350 | check_ambiguity, override, 0, 0, | 
| 1351 | "gxyz", '-', | 
| 1352 | additional_error)) | 
| 1353 | goto failure; | 
| 1354 |  | 
| 1355 | } | 
| 1356 | /* 2D g(r) (Slab width --dz must be specified).  */ | 
| 1357 | else if (strcmp (long_options[option_index].name, "twodgofr") == 0) | 
| 1358 | { | 
| 1359 |  | 
| 1360 | if (args_info->staticProps_group_counter && override) | 
| 1361 | reset_group_staticProps (args_info); | 
| 1362 | args_info->staticProps_group_counter += 1; | 
| 1363 |  | 
| 1364 | if (update_arg( 0 , | 
| 1365 | 0 , &(args_info->twodgofr_given), | 
| 1366 | &(local_args_info.twodgofr_given), optarg, 0, 0, ARG_NO, | 
| 1367 | check_ambiguity, override, 0, 0, | 
| 1368 | "twodgofr", '-', | 
| 1369 | additional_error)) | 
| 1370 | goto failure; | 
| 1371 |  | 
| 1372 | } | 
| 1373 | /* rp2 order parameter (--sele1 and --sele2 must be specified).  */ | 
| 1374 | else if (strcmp (long_options[option_index].name, "rp2") == 0) | 
| 1375 | { | 
| 1376 |  | 
| 1377 | if (args_info->staticProps_group_counter && override) | 
| 1378 | reset_group_staticProps (args_info); | 
| 1379 | args_info->staticProps_group_counter += 1; | 
| 1380 |  | 
| 1381 | if (update_arg( 0 , | 
| 1382 | 0 , &(args_info->rp2_given), | 
| 1383 | &(local_args_info.rp2_given), optarg, 0, 0, ARG_NO, | 
| 1384 | check_ambiguity, override, 0, 0, | 
| 1385 | "rp2", '-', | 
| 1386 | additional_error)) | 
| 1387 | goto failure; | 
| 1388 |  | 
| 1389 | } | 
| 1390 | /* slab density.  */ | 
| 1391 | else if (strcmp (long_options[option_index].name, "slab_density") == 0) | 
| 1392 | { | 
| 1393 |  | 
| 1394 | if (args_info->staticProps_group_counter && override) | 
| 1395 | reset_group_staticProps (args_info); | 
| 1396 | args_info->staticProps_group_counter += 1; | 
| 1397 |  | 
| 1398 | if (update_arg( 0 , | 
| 1399 | 0 , &(args_info->slab_density_given), | 
| 1400 | &(local_args_info.slab_density_given), optarg, 0, 0, ARG_NO, | 
| 1401 | check_ambiguity, override, 0, 0, | 
| 1402 | "slab_density", '-', | 
| 1403 | additional_error)) | 
| 1404 | goto failure; | 
| 1405 |  | 
| 1406 | } | 
| 1407 | /* p(cos(theta)).  */ | 
| 1408 | else if (strcmp (long_options[option_index].name, "p_angle") == 0) | 
| 1409 | { | 
| 1410 |  | 
| 1411 | if (args_info->staticProps_group_counter && override) | 
| 1412 | reset_group_staticProps (args_info); | 
| 1413 | args_info->staticProps_group_counter += 1; | 
| 1414 |  | 
| 1415 | if (update_arg( 0 , | 
| 1416 | 0 , &(args_info->p_angle_given), | 
| 1417 | &(local_args_info.p_angle_given), optarg, 0, 0, ARG_NO, | 
| 1418 | check_ambiguity, override, 0, 0, | 
| 1419 | "p_angle", '-', | 
| 1420 | additional_error)) | 
| 1421 | goto failure; | 
| 1422 |  | 
| 1423 | } | 
| 1424 | /* hxy.  */ | 
| 1425 | else if (strcmp (long_options[option_index].name, "hxy") == 0) | 
| 1426 | { | 
| 1427 |  | 
| 1428 | if (args_info->staticProps_group_counter && override) | 
| 1429 | reset_group_staticProps (args_info); | 
| 1430 | args_info->staticProps_group_counter += 1; | 
| 1431 |  | 
| 1432 | if (update_arg( 0 , | 
| 1433 | 0 , &(args_info->hxy_given), | 
| 1434 | &(local_args_info.hxy_given), optarg, 0, 0, ARG_NO, | 
| 1435 | check_ambiguity, override, 0, 0, | 
| 1436 | "hxy", '-', | 
| 1437 | additional_error)) | 
| 1438 | goto failure; | 
| 1439 |  | 
| 1440 | } | 
| 1441 | /* rho of R.  */ | 
| 1442 | else if (strcmp (long_options[option_index].name, "rho_r") == 0) | 
| 1443 | { | 
| 1444 |  | 
| 1445 | if (args_info->staticProps_group_counter && override) | 
| 1446 | reset_group_staticProps (args_info); | 
| 1447 | args_info->staticProps_group_counter += 1; | 
| 1448 |  | 
| 1449 | if (update_arg( 0 , | 
| 1450 | 0 , &(args_info->rho_r_given), | 
| 1451 | &(local_args_info.rho_r_given), optarg, 0, 0, ARG_NO, | 
| 1452 | check_ambiguity, override, 0, 0, | 
| 1453 | "rho_r", '-', | 
| 1454 | additional_error)) | 
| 1455 | goto failure; | 
| 1456 |  | 
| 1457 | } | 
| 1458 | /* hull volume of nanoparticle.  */ | 
| 1459 | else if (strcmp (long_options[option_index].name, "hullvol") == 0) | 
| 1460 | { | 
| 1461 |  | 
| 1462 | if (args_info->staticProps_group_counter && override) | 
| 1463 | reset_group_staticProps (args_info); | 
| 1464 | args_info->staticProps_group_counter += 1; | 
| 1465 |  | 
| 1466 | if (update_arg( 0 , | 
| 1467 | 0 , &(args_info->hullvol_given), | 
| 1468 | &(local_args_info.hullvol_given), optarg, 0, 0, ARG_NO, | 
| 1469 | check_ambiguity, override, 0, 0, | 
| 1470 | "hullvol", '-', | 
| 1471 | additional_error)) | 
| 1472 | goto failure; | 
| 1473 |  | 
| 1474 | } | 
| 1475 |  | 
| 1476 | break; | 
| 1477 | case '?':       /* Invalid option.  */ | 
| 1478 | /* `getopt_long' already printed an error message.  */ | 
| 1479 | goto failure; | 
| 1480 |  | 
| 1481 | default:        /* bug: option not considered.  */ | 
| 1482 | fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : "")); | 
| 1483 | abort (); | 
| 1484 | } /* switch */ | 
| 1485 | } /* while */ | 
| 1486 |  | 
| 1487 | if (args_info->staticProps_group_counter > 1) | 
| 1488 | { | 
| 1489 | fprintf (stderr, "%s: %d options of group staticProps were given. One is required.%s\n", argv[0], args_info->staticProps_group_counter, (additional_error ? additional_error : "")); | 
| 1490 | error = 1; | 
| 1491 | } | 
| 1492 |  | 
| 1493 |  | 
| 1494 |  | 
| 1495 | if (check_required) | 
| 1496 | { | 
| 1497 | error += cmdline_parser_required2 (args_info, argv[0], additional_error); | 
| 1498 | } | 
| 1499 |  | 
| 1500 | cmdline_parser_release (&local_args_info); | 
| 1501 |  | 
| 1502 | if ( error ) | 
| 1503 | return (EXIT_FAILURE); | 
| 1504 |  | 
| 1505 | if (optind < argc) | 
| 1506 | { | 
| 1507 | int i = 0 ; | 
| 1508 | int found_prog_name = 0; | 
| 1509 | /* whether program name, i.e., argv[0], is in the remaining args | 
| 1510 | (this may happen with some implementations of getopt, | 
| 1511 | but surely not with the one included by gengetopt) */ | 
| 1512 |  | 
| 1513 | i = optind; | 
| 1514 | while (i < argc) | 
| 1515 | if (argv[i++] == argv[0]) { | 
| 1516 | found_prog_name = 1; | 
| 1517 | break; | 
| 1518 | } | 
| 1519 | i = 0; | 
| 1520 |  | 
| 1521 | args_info->inputs_num = argc - optind - found_prog_name; | 
| 1522 | args_info->inputs = | 
| 1523 | (char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ; | 
| 1524 | while (optind < argc) | 
| 1525 | if (argv[optind++] != argv[0]) | 
| 1526 | args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ; | 
| 1527 | } | 
| 1528 |  | 
| 1529 | return 0; | 
| 1530 |  | 
| 1531 | failure: | 
| 1532 |  | 
| 1533 | cmdline_parser_release (&local_args_info); | 
| 1534 | return (EXIT_FAILURE); | 
| 1535 | } |