--- trunk/src/applications/staticProps/StaticPropsCmd.c 2006/11/10 18:45:29 1091 +++ trunk/src/applications/staticProps/StaticPropsCmd.c 2007/04/11 23:27:20 1128 @@ -1,7 +1,7 @@ /* - File autogenerated by gengetopt version 2.15 + File autogenerated by gengetopt version 2.19.1 generated with the following command: - gengetopt -i StaticProps.ggo -F StaticPropsCmd + gengetopt -i StaticProps.ggo -F StaticPropsCmd -u The developers of gengetopt consider the fixed text that goes in all gengetopt output files to be in the public domain: @@ -21,6 +21,51 @@ #include "StaticPropsCmd.h" +const char *gengetopt_args_info_purpose = ""; + +const char *gengetopt_args_info_usage = "Usage: StaticProps [OPTIONS]... [FILES]..."; + +const char *gengetopt_args_info_description = ""; + +const char *gengetopt_args_info_help[] = { + " -h, --help Print help and exit", + " -V, --version Print version and exit", + " -i, --input=filename input dump file", + " -o, --output=filename output file name", + " -n, --step=INT process every n frame (default=`1')", + " -b, --nbins=INT number of bins (general purpose) \n (default=`100')", + " -x, --nbins_x=INT number of bins in x axis (default=`100')", + " -y, --nbins_y=INT number of bins in y axis (default=`100')", + " -a, --nanglebins=INT number of bins for cos(angle) (default=`50')", + " --length=DOUBLE maximum length (Defaults to 1/2 smallest length \n of first frame)", + " -c, --rcut=DOUBLE cutoff radius (rcut)", + " -z, --zoffset=DOUBLE Where to set the zero for the slab_density \n calculation (default=`0')", + " --sele1=selection script select the first stuntdouble set", + " --sele2=selection script select the second stuntdouble set", + " --sele3=selection script select the third stuntdouble set", + " --refsele=selection script\n select reference (use and only use with --gxyz)", + " --molname=STRING molecule name", + " --begin=INT begin internal index", + " --end=INT end internal index", + " --radius=DOUBLE nanoparticle radius", + "\n Group: staticProps\n an option of this group is required", + " --bo bond order parameter (--rcut must be specified)", + " --bor bond order parameter as a function of radius \n (--rcut must be specified)", + " -g, --gofr g(r)", + " --r_theta g(r, cos(theta))", + " --r_omega g(r, cos(omega))", + " --theta_omega g(cos(theta), cos(omega))", + " --gxyz g(x, y, z)", + " -p, --p2 p2 order parameter (--sele1 and --sele2 must be \n specified)", + " --rp2 rp2 order parameter (--sele1 and --sele2 must \n be specified)", + " -s, --scd scd order parameter (either --sele1, --sele2, \n --sele3 are specified or --molname, --begin, \n --end are specified)", + " -d, --density density plot", + " --slab_density slab density", + " --hxy hxy", + " --rho_r rho of R", + 0 +}; + static void clear_given (struct gengetopt_args_info *args_info); static @@ -59,6 +104,7 @@ void clear_given (struct gengetopt_args_info *args_inf args_info->end_given = 0 ; args_info->radius_given = 0 ; args_info->bo_given = 0 ; + args_info->bor_given = 0 ; args_info->gofr_given = 0 ; args_info->r_theta_given = 0 ; args_info->r_omega_given = 0 ; @@ -111,6 +157,46 @@ void clear_args (struct gengetopt_args_info *args_info } +static +void init_args_info(struct gengetopt_args_info *args_info) +{ + args_info->help_help = gengetopt_args_info_help[0] ; + args_info->version_help = gengetopt_args_info_help[1] ; + args_info->input_help = gengetopt_args_info_help[2] ; + args_info->output_help = gengetopt_args_info_help[3] ; + args_info->step_help = gengetopt_args_info_help[4] ; + args_info->nbins_help = gengetopt_args_info_help[5] ; + args_info->nbins_x_help = gengetopt_args_info_help[6] ; + args_info->nbins_y_help = gengetopt_args_info_help[7] ; + args_info->nanglebins_help = gengetopt_args_info_help[8] ; + args_info->length_help = gengetopt_args_info_help[9] ; + args_info->rcut_help = gengetopt_args_info_help[10] ; + args_info->zoffset_help = gengetopt_args_info_help[11] ; + args_info->sele1_help = gengetopt_args_info_help[12] ; + args_info->sele2_help = gengetopt_args_info_help[13] ; + args_info->sele3_help = gengetopt_args_info_help[14] ; + args_info->refsele_help = gengetopt_args_info_help[15] ; + args_info->molname_help = gengetopt_args_info_help[16] ; + args_info->begin_help = gengetopt_args_info_help[17] ; + args_info->end_help = gengetopt_args_info_help[18] ; + args_info->radius_help = gengetopt_args_info_help[19] ; + args_info->bo_help = gengetopt_args_info_help[20] ; + args_info->bor_help = gengetopt_args_info_help[21] ; + args_info->gofr_help = gengetopt_args_info_help[22] ; + args_info->r_theta_help = gengetopt_args_info_help[23] ; + args_info->r_omega_help = gengetopt_args_info_help[24] ; + args_info->theta_omega_help = gengetopt_args_info_help[25] ; + args_info->gxyz_help = gengetopt_args_info_help[26] ; + args_info->p2_help = gengetopt_args_info_help[27] ; + args_info->rp2_help = gengetopt_args_info_help[28] ; + args_info->scd_help = gengetopt_args_info_help[29] ; + args_info->density_help = gengetopt_args_info_help[30] ; + args_info->slab_density_help = gengetopt_args_info_help[31] ; + args_info->hxy_help = gengetopt_args_info_help[32] ; + args_info->rho_r_help = gengetopt_args_info_help[33] ; + +} + void cmdline_parser_print_version (void) { @@ -120,43 +206,19 @@ cmdline_parser_print_help (void) void cmdline_parser_print_help (void) { + int i = 0; cmdline_parser_print_version (); - printf("\nUsage: StaticProps [OPTIONS]...\n\n"); - printf("%s\n"," -h, --help Print help and exit"); - printf("%s\n"," -V, --version Print version and exit"); - printf("%s\n"," -i, --input=filename input dump file"); - printf("%s\n"," -o, --output=filename output file name"); - printf("%s\n"," -n, --step=INT process every n frame (default=`1')"); - printf("%s\n"," -b, --nbins=INT number of bins (general purpose) \n (default=`100')"); - printf("%s\n"," -x, --nbins_x=INT number of bins in x axis (default=`100')"); - printf("%s\n"," -y, --nbins_y=INT number of bins in y axis (default=`100')"); - printf("%s\n"," -a, --nanglebins=INT number of bins for cos(angle) (default=`50')"); - printf("%s\n"," --length=DOUBLE maximum length (Defaults to 1/2 smallest length \n of first frame)"); - printf("%s\n"," -c, --rcut=DOUBLE cutoff radius (rcut)"); - printf("%s\n"," -z, --zoffset=DOUBLE Where to set the zero for the slab_density \n calculation (default=`0')"); - printf("%s\n"," --sele1=selection script select the first stuntdouble set"); - printf("%s\n"," --sele2=selection script select the second stuntdouble set"); - printf("%s\n"," --sele3=selection script select the third stuntdouble set"); - printf("%s\n"," --refsele=selection script\n select reference (use and only use with --gxyz)"); - printf("%s\n"," --molname=STRING molecule name"); - printf("%s\n"," --begin=INT begin internal index"); - printf("%s\n"," --end=INT end internal index"); - printf("%s\n"," --radius=DOUBLE nanoparticle radius"); - printf("%s\n","\n Group: staticProps\n an option of this group is required"); - printf("%s\n"," --bo bond order parameter (--rcut must be specified"); - printf("%s\n"," -g, --gofr g(r)"); - printf("%s\n"," --r_theta g(r, cos(theta))"); - printf("%s\n"," --r_omega g(r, cos(omega))"); - printf("%s\n"," --theta_omega g(cos(theta), cos(omega))"); - printf("%s\n"," --gxyz g(x, y, z)"); - printf("%s\n"," -p, --p2 p2 order parameter (--sele1 and --sele2 must be \n specified)"); - printf("%s\n"," --rp2 rp2 order parameter (--sele1 and --sele2 must \n be specified)"); - printf("%s\n"," -s, --scd scd order parameter (either --sele1, --sele2, \n --sele3 are specified or --molname, --begin, \n --end are specified)"); - printf("%s\n"," -d, --density density plot"); - printf("%s\n"," --slab_density slab density"); - printf("%s\n"," --hxy hxy"); - printf("%s\n"," --rho_r rho of R"); - + + if (strlen(gengetopt_args_info_purpose) > 0) + printf("\n%s\n", gengetopt_args_info_purpose); + + printf("\n%s\n\n", gengetopt_args_info_usage); + + if (strlen(gengetopt_args_info_description) > 0) + printf("%s\n", gengetopt_args_info_description); + + while (gengetopt_args_info_help[i]) + printf("%s\n", gengetopt_args_info_help[i++]); } void @@ -164,12 +226,17 @@ cmdline_parser_init (struct gengetopt_args_info *args_ { clear_given (args_info); clear_args (args_info); + init_args_info (args_info); + + args_info->inputs = NULL; + args_info->inputs_num = 0; } static void cmdline_parser_release (struct gengetopt_args_info *args_info) { + unsigned int i; if (args_info->input_arg) { free (args_info->input_arg); /* free previous argument */ @@ -295,6 +362,12 @@ cmdline_parser_release (struct gengetopt_args_info *ar free (args_info->radius_orig); /* free previous argument */ args_info->radius_orig = 0; } + + for (i = 0; i < args_info->inputs_num; ++i) + free (args_info->inputs [i]); + + if (args_info->inputs_num) + free (args_info->inputs); clear_given (args_info); } @@ -448,6 +521,9 @@ cmdline_parser_file_save(const char *filename, struct if (args_info->bo_given) { fprintf(outfile, "%s\n", "bo"); } + if (args_info->bor_given) { + fprintf(outfile, "%s\n", "bor"); + } if (args_info->gofr_given) { fprintf(outfile, "%s\n", "gofr"); } @@ -524,6 +600,7 @@ reset_group_staticProps(struct gengetopt_args_info *ar return; args_info->bo_given = 0 ; + args_info->bor_given = 0 ; args_info->gofr_given = 0 ; args_info->r_theta_given = 0 ; args_info->r_omega_given = 0 ; @@ -584,11 +661,13 @@ cmdline_parser_required2 (struct gengetopt_args_info * { int error = 0; + /* checks for required options */ if (! args_info->input_given) { fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : "")); error = 1; } + if (args_info->staticProps_group_counter == 0) { fprintf (stderr, "%s: %d options of group staticProps were given. One is required.%s\n", prog_name, args_info->staticProps_group_counter, (additional_error ? additional_error : "")); @@ -596,6 +675,8 @@ cmdline_parser_required2 (struct gengetopt_args_info * } + /* checks for dependences among options */ + return error; } @@ -613,7 +694,7 @@ cmdline_parser_internal (int argc, char * const *argv, cmdline_parser_init (&local_args_info); optarg = 0; - optind = 1; + optind = 0; opterr = 1; optopt = '?'; @@ -644,6 +725,7 @@ cmdline_parser_internal (int argc, char * const *argv, { "end", 1, NULL, 0 }, { "radius", 1, NULL, 0 }, { "bo", 0, NULL, 0 }, + { "bor", 0, NULL, 0 }, { "gofr", 0, NULL, 'g' }, { "r_theta", 0, NULL, 0 }, { "r_omega", 0, NULL, 0 }, @@ -1093,7 +1175,7 @@ cmdline_parser_internal (int argc, char * const *argv, free (args_info->radius_orig); /* free previous string */ args_info->radius_orig = gengetopt_strdup (optarg); } - /* bond order parameter (--rcut must be specified. */ + /* bond order parameter (--rcut must be specified). */ else if (strcmp (long_options[option_index].name, "bo") == 0) { if (local_args_info.bo_given) @@ -1105,6 +1187,23 @@ cmdline_parser_internal (int argc, char * const *argv, continue; local_args_info.bo_given = 1; args_info->bo_given = 1; + if (args_info->staticProps_group_counter && override) + reset_group_staticProps (args_info); + args_info->staticProps_group_counter += 1; + break; + } + /* bond order parameter as a function of radius (--rcut must be specified). */ + else if (strcmp (long_options[option_index].name, "bor") == 0) + { + if (local_args_info.bor_given) + { + fprintf (stderr, "%s: `--bor' option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); + goto failure; + } + if (args_info->bor_given && ! override) + continue; + local_args_info.bor_given = 1; + args_info->bor_given = 1; if (args_info->staticProps_group_counter && override) reset_group_staticProps (args_info); args_info->staticProps_group_counter += 1; @@ -1276,6 +1375,30 @@ cmdline_parser_internal (int argc, char * const *argv, if ( error ) return (EXIT_FAILURE); + if (optind < argc) + { + int i = 0 ; + int found_prog_name = 0; + /* whether program name, i.e., argv[0], is in the remaining args + (this may happen with some implementations of getopt, + but surely not with the one included by gengetopt) */ + + i = optind; + while (i < argc) + if (argv[i++] == argv[0]) { + found_prog_name = 1; + break; + } + i = 0; + + args_info->inputs_num = argc - optind - found_prog_name; + args_info->inputs = + (char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ; + while (optind < argc) + if (argv[optind++] != argv[0]) + args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ; + } + return 0; failure: